Wall clock time and date at job start Wed Apr 1 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 C 1.52995 * 109.47243 * 120.00882 * 2 1 3 5 5 N 1.46502 * 109.47194 * 174.99858 * 4 2 1 6 6 C 1.34773 * 119.99997 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00084 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00038 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47328 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00190 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00209 * 180.02562 * 10 9 8 13 13 N 1.31636 * 119.99547 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00055 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47545 * 59.99635 * 14 12 10 16 16 H 1.48499 * 109.47063 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46858 * 299.99538 * 14 12 10 18 18 N 1.46901 * 109.46830 * 240.00491 * 2 1 3 19 19 C 1.46902 * 110.99844 * 84.99930 * 18 2 1 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 2 21 21 O 1.21283 * 120.00262 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72353 * 20 19 18 23 23 C 1.47151 * 120.98153 * 359.97438 * 22 20 19 24 24 C 1.53717 * 108.16446 * 129.42886 * 23 22 20 25 25 O 1.42967 * 109.14561 * 52.53739 * 24 23 22 26 26 C 1.42962 * 114.16617 * 297.29050 * 25 24 23 27 27 C 1.47151 * 120.98263 * 180.27616 * 22 20 19 28 28 H 1.09001 * 109.47089 * 299.99716 * 1 2 3 29 29 H 1.09004 * 109.47615 * 59.99461 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46638 * 294.99714 * 4 2 1 32 32 H 1.09000 * 109.47104 * 54.99475 * 4 2 1 33 33 H 0.96998 * 120.00006 * 359.97438 * 5 4 2 34 34 H 1.09008 * 109.47165 * 299.99995 * 8 6 5 35 35 H 1.09000 * 109.47419 * 59.99989 * 8 6 5 36 36 H 0.97003 * 119.99176 * 180.02562 * 13 12 10 37 37 H 1.00902 * 111.00235 * 321.05167 * 18 2 1 38 38 H 1.09004 * 109.47131 * 60.00016 * 19 18 2 39 39 H 1.08994 * 109.47471 * 299.99766 * 19 18 2 40 40 H 1.08997 * 109.67944 * 249.20758 * 23 22 20 41 41 H 1.09001 * 109.68346 * 9.76100 * 23 22 20 42 42 H 1.08998 * 109.65611 * 292.57311 * 24 23 22 43 43 H 1.08994 * 109.48424 * 172.39690 * 24 23 22 44 44 H 1.09008 * 109.51186 * 302.65841 * 26 25 24 45 45 H 1.08996 * 109.55507 * 182.53559 * 26 25 24 46 46 H 1.09000 * 109.68250 * 350.23937 * 27 22 20 47 47 H 1.09002 * 109.68088 * 110.79250 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1731 -1.4286 2.1908 7 8 3.5700 -1.8837 3.1396 8 6 5.6750 -1.5362 2.1307 9 16 6.2784 -2.3898 3.6084 10 6 8.0102 -2.3756 3.2842 11 1 8.3865 -1.9223 2.3790 12 6 8.8909 -2.9478 4.1918 13 7 8.4322 -3.5006 5.2949 14 14 10.7268 -2.9333 3.8478 15 1 11.1970 -1.5299 3.7278 16 1 11.4447 -3.6016 4.9628 17 1 10.9985 -3.6565 2.5796 18 7 2.0196 -0.6924 -1.1995 19 6 2.0823 0.2228 -2.3469 20 6 2.5883 -0.5212 -3.5558 21 8 2.8686 -1.6981 -3.4702 22 7 2.7236 0.1198 -4.7337 23 6 2.3831 1.5454 -4.8637 24 6 3.5685 2.2624 -5.5297 25 8 3.9110 1.5792 -6.7380 26 6 4.3505 0.2326 -6.5445 27 6 3.2099 -0.5870 -5.9292 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -0.1585 2.1368 32 1 1.6053 -1.7199 1.2949 33 1 3.9824 -0.4629 0.4314 34 1 5.9637 -2.0992 1.2430 35 1 6.1093 -0.5376 2.0848 36 1 9.0478 -3.9002 5.9292 37 1 1.4494 -1.4978 -1.4103 38 1 2.7587 1.0464 -2.1182 39 1 1.0870 0.6165 -2.5525 40 1 1.4909 1.6550 -5.4802 41 1 2.2025 1.9713 -3.8767 42 1 4.4245 2.2600 -4.8549 43 1 3.2890 3.2905 -5.7595 44 1 5.2093 0.2228 -5.8733 45 1 4.6333 -0.2002 -7.5040 46 1 3.5771 -1.5741 -5.6482 47 1 2.3993 -0.6881 -6.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480427448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:48 Heat of formation + Delta-G solvation = -107.373270 kcal Electronic energy + Delta-G solvation = -27614.873735 eV Core-core repulsion = 23538.293236 eV Total energy + Delta-G solvation = -4076.580499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81455 -39.24619 -38.76541 -37.29878 -35.25493 -33.88692 -32.36370 -32.25175 -31.30701 -29.26760 -28.62926 -26.54693 -25.75275 -25.25632 -24.47755 -22.50877 -21.36011 -20.09094 -19.75013 -17.97963 -17.64993 -17.13723 -16.61441 -16.38604 -16.09602 -15.98608 -15.89444 -15.62153 -15.39284 -14.92550 -14.74522 -14.60721 -14.34869 -13.91244 -13.55938 -13.44335 -13.25980 -13.00622 -12.85116 -12.79690 -12.61272 -12.43369 -12.28439 -12.05233 -11.96054 -11.59736 -11.30923 -11.25969 -10.98820 -10.97697 -10.74597 -10.71174 -10.18802 -9.75359 -9.26839 -9.11214 -8.99873 -8.86140 -8.66069 -8.15135 -6.41687 -6.15139 -3.84666 2.18135 2.26402 3.14627 3.22635 3.26424 3.28215 3.31955 3.37922 3.61112 3.87431 4.02891 4.10500 4.27171 4.34215 4.46341 4.48490 4.56160 4.62826 4.66503 4.74418 4.80255 4.88608 4.91187 5.02457 5.11393 5.19641 5.21377 5.26503 5.28410 5.34667 5.40309 5.60966 5.68382 5.73316 5.83453 5.94561 6.02470 6.26902 6.43905 6.49680 6.75207 6.83645 6.97827 7.65756 7.72109 7.94922 8.41725 8.79738 9.29939 10.92281 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.002217 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.456781 B =12625.871774 C =14754.198138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 H 0.086 0.914 4 C 0.135 3.865 5 N -0.724 5.724 6 C 0.531 3.469 7 O -0.525 6.525 8 C -0.151 4.151 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.666 5.666 19 C 0.043 3.957 20 C 0.515 3.485 21 O -0.515 6.515 22 N -0.622 5.622 23 C 0.073 3.927 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.047 3.953 27 C 0.078 3.922 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.356 0.644 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 14.926 -25.058 33.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.037 4.037 3 H 0.104 0.896 4 C 0.009 3.991 5 N -0.379 5.379 6 C 0.317 3.683 7 O -0.400 6.400 8 C -0.302 4.302 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.200 1.200 18 N -0.300 5.300 19 C -0.090 4.090 20 C 0.302 3.698 21 O -0.389 6.389 22 N -0.359 5.359 23 C -0.051 4.051 24 C -0.032 4.032 25 O -0.298 6.298 26 C -0.030 4.030 27 C -0.045 4.045 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.176 0.824 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.125 0.875 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.027 13.564 -23.252 31.852 hybrid contribution 1.099 0.787 -1.745 2.207 sum -15.929 14.351 -24.997 32.932 Atomic orbital electron populations 1.22434 0.95988 1.02986 1.02663 1.21877 0.93413 0.98316 0.90105 0.89580 1.21212 0.81532 1.00662 0.95649 1.45761 1.06625 1.61439 1.24027 1.20262 0.89438 0.76868 0.81772 1.90688 1.69932 1.46424 1.33006 1.23508 0.93858 1.05406 1.07440 1.85352 1.04395 1.73310 1.20429 1.22841 0.91651 1.44142 1.09606 0.91040 1.24990 0.99527 0.94614 0.94504 1.70020 1.35415 1.35537 1.09415 0.86230 0.82882 0.78410 0.78005 1.19994 1.20854 1.19952 1.60220 1.58823 1.08888 1.02039 1.21864 1.00924 0.96330 0.89860 1.20666 0.77873 0.87637 0.83579 1.90763 1.48596 1.15731 1.83774 1.48158 1.67096 1.10859 1.09812 1.22546 0.98900 0.80916 1.02709 1.23074 0.96372 0.96477 0.87290 1.87981 1.86103 1.25591 1.30110 1.23029 0.95537 0.82345 1.02133 1.22294 0.97680 0.97832 0.86696 0.91144 0.92484 0.91727 0.91259 0.91699 0.76312 0.89256 0.89480 0.92208 0.82377 0.87932 0.92164 0.90264 0.88703 0.92221 0.87467 0.92280 0.87424 0.87822 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.16 37.16 0.34 -0.71 16 2 C 0.07 0.55 2.75 -67.72 -0.19 0.36 16 3 H 0.09 0.55 7.80 -51.93 -0.40 0.14 16 4 C 0.13 1.57 5.37 -4.04 -0.02 1.55 16 5 N -0.72 -10.41 5.39 -60.30 -0.32 -10.74 16 6 C 0.53 10.51 7.85 -10.99 -0.09 10.43 16 7 O -0.53 -12.47 15.86 5.55 0.09 -12.38 16 8 C -0.15 -3.25 6.16 36.00 0.22 -3.02 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 11 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.76 13.22 55.49 0.73 -26.02 16 14 Si 0.92 21.91 29.55 -169.99 -5.02 16.88 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 N -0.67 -5.64 5.31 -107.99 -0.57 -6.21 16 19 C 0.04 0.26 4.34 -4.97 -0.02 0.24 16 20 C 0.51 4.65 7.75 -10.98 -0.09 4.57 16 21 O -0.51 -6.96 15.67 5.55 0.09 -6.88 16 22 N -0.62 -4.27 3.01 -171.99 -0.52 -4.79 16 23 C 0.07 0.28 6.56 -3.31 -0.02 0.25 16 24 C 0.05 0.20 7.00 37.53 0.26 0.46 16 25 O -0.38 -2.61 10.74 -35.23 -0.38 -2.99 16 26 C 0.05 0.28 6.99 37.33 0.26 0.54 16 27 C 0.08 0.52 6.64 -3.51 -0.02 0.50 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.26 7.45 -51.93 -0.39 -0.13 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 5.03 8.14 -40.82 -0.33 4.70 16 34 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 35 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.36 3.32 8.17 -39.29 -0.32 3.00 16 38 H 0.10 0.49 7.59 -51.93 -0.39 0.10 16 39 H 0.06 0.25 7.30 -51.93 -0.38 -0.13 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.17 6.06 -51.93 -0.31 -0.14 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 45 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.85 7.08 -51.93 -0.37 0.49 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -38.67 399.60 -8.78 -47.45 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.52 Total: 1.78 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 0.84 Total: 1.82 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.68 Total: -47.76 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.20 Total: -22.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.67 -8.78 -47.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.919 kcal (2) G-P(sol) polarization free energy of solvation -38.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds