Wall clock time and date at job start Wed Apr 1 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 C 1.52995 * 109.47243 * 120.00882 * 2 1 3 5 5 N 1.46502 * 109.47194 * 174.99858 * 4 2 1 6 6 C 1.34773 * 119.99997 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00084 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00038 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47328 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00190 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00209 * 180.02562 * 10 9 8 13 13 N 1.31636 * 119.99547 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00055 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47545 * 59.99635 * 14 12 10 16 16 H 1.48499 * 109.47063 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46858 * 299.99538 * 14 12 10 18 18 N 1.46901 * 109.46830 * 240.00491 * 2 1 3 19 19 C 1.46902 * 110.99844 * 84.99930 * 18 2 1 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 2 21 21 O 1.21283 * 120.00262 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72353 * 20 19 18 23 23 C 1.47151 * 120.98153 * 359.97438 * 22 20 19 24 24 C 1.53717 * 108.16446 * 129.42886 * 23 22 20 25 25 O 1.42967 * 109.14561 * 52.53739 * 24 23 22 26 26 C 1.42962 * 114.16617 * 297.29050 * 25 24 23 27 27 C 1.47151 * 120.98263 * 180.27616 * 22 20 19 28 28 H 1.09001 * 109.47089 * 299.99716 * 1 2 3 29 29 H 1.09004 * 109.47615 * 59.99461 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46638 * 294.99714 * 4 2 1 32 32 H 1.09000 * 109.47104 * 54.99475 * 4 2 1 33 33 H 0.96998 * 120.00006 * 359.97438 * 5 4 2 34 34 H 1.09008 * 109.47165 * 299.99995 * 8 6 5 35 35 H 1.09000 * 109.47419 * 59.99989 * 8 6 5 36 36 H 0.97003 * 119.99176 * 180.02562 * 13 12 10 37 37 H 1.00902 * 111.00235 * 321.05167 * 18 2 1 38 38 H 1.09004 * 109.47131 * 60.00016 * 19 18 2 39 39 H 1.08994 * 109.47471 * 299.99766 * 19 18 2 40 40 H 1.08997 * 109.67944 * 249.20758 * 23 22 20 41 41 H 1.09001 * 109.68346 * 9.76100 * 23 22 20 42 42 H 1.08998 * 109.65611 * 292.57311 * 24 23 22 43 43 H 1.08994 * 109.48424 * 172.39690 * 24 23 22 44 44 H 1.09008 * 109.51186 * 302.65841 * 26 25 24 45 45 H 1.08996 * 109.55507 * 182.53559 * 26 25 24 46 46 H 1.09000 * 109.68250 * 350.23937 * 27 22 20 47 47 H 1.09002 * 109.68088 * 110.79250 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1731 -1.4286 2.1908 7 8 3.5700 -1.8837 3.1396 8 6 5.6750 -1.5362 2.1307 9 16 6.2784 -2.3898 3.6084 10 6 8.0102 -2.3756 3.2842 11 1 8.3865 -1.9223 2.3790 12 6 8.8909 -2.9478 4.1918 13 7 8.4322 -3.5006 5.2949 14 14 10.7268 -2.9333 3.8478 15 1 11.1970 -1.5299 3.7278 16 1 11.4447 -3.6016 4.9628 17 1 10.9985 -3.6565 2.5796 18 7 2.0196 -0.6924 -1.1995 19 6 2.0823 0.2228 -2.3469 20 6 2.5883 -0.5212 -3.5558 21 8 2.8686 -1.6981 -3.4702 22 7 2.7236 0.1198 -4.7337 23 6 2.3831 1.5454 -4.8637 24 6 3.5685 2.2624 -5.5297 25 8 3.9110 1.5792 -6.7380 26 6 4.3505 0.2326 -6.5445 27 6 3.2099 -0.5870 -5.9292 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -0.1585 2.1368 32 1 1.6053 -1.7199 1.2949 33 1 3.9824 -0.4629 0.4314 34 1 5.9637 -2.0992 1.2430 35 1 6.1093 -0.5376 2.0848 36 1 9.0478 -3.9002 5.9292 37 1 1.4494 -1.4978 -1.4103 38 1 2.7587 1.0464 -2.1182 39 1 1.0870 0.6165 -2.5525 40 1 1.4909 1.6550 -5.4802 41 1 2.2025 1.9713 -3.8767 42 1 4.4245 2.2600 -4.8549 43 1 3.2890 3.2905 -5.7595 44 1 5.2093 0.2228 -5.8733 45 1 4.6333 -0.2002 -7.5040 46 1 3.5771 -1.5741 -5.6482 47 1 2.3993 -0.6881 -6.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480427448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:47 Heat of formation + Delta-G solvation = -139.087937 kcal Electronic energy + Delta-G solvation = -27616.248986 eV Core-core repulsion = 23538.293236 eV Total energy + Delta-G solvation = -4077.955750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37497 -40.57504 -39.43370 -38.13088 -35.82386 -35.08935 -34.57901 -32.82039 -32.01760 -30.70962 -29.13800 -27.72987 -27.08346 -26.46967 -24.91028 -22.99134 -22.06404 -21.58454 -20.28235 -19.79166 -18.47947 -17.78247 -17.65305 -17.25667 -16.94465 -16.91159 -16.87141 -16.64847 -16.28677 -16.01837 -15.87082 -15.70727 -15.43644 -14.96809 -14.62182 -14.46252 -14.21058 -14.08159 -13.82124 -13.62329 -13.37852 -13.20293 -13.16584 -13.07238 -12.86236 -12.75012 -12.65260 -12.52187 -12.35461 -11.93461 -11.75619 -11.72928 -11.24459 -11.12749 -10.92175 -10.84792 -10.27965 -9.99255 -9.64350 -9.41869 -8.66175 -8.34122 -6.12286 1.27741 1.43902 1.47069 1.55924 1.57708 1.67733 1.76584 2.27604 2.39271 2.85546 2.99446 3.06668 3.34512 3.49893 3.73385 3.83023 3.96647 4.01015 4.09220 4.15153 4.19477 4.23620 4.28590 4.31186 4.35655 4.40797 4.50213 4.51690 4.64164 4.66442 4.74089 4.79844 4.83353 4.89039 4.93245 4.96372 5.27521 5.33659 5.41384 5.54105 5.90435 6.09503 6.19909 6.22664 6.34476 6.62053 7.06553 7.11371 7.33195 8.75005 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.002217 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.456781 B =12625.871774 C =14754.198138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.110 0.890 4 C 0.129 3.871 5 N -0.697 5.697 6 C 0.530 3.470 7 O -0.572 6.572 8 C -0.128 4.128 9 S -0.150 6.150 10 C -0.548 4.548 11 H 0.081 0.919 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.260 1.260 16 H -0.277 1.277 17 H -0.264 1.264 18 N -0.687 5.687 19 C 0.048 3.952 20 C 0.508 3.492 21 O -0.572 6.572 22 N -0.620 5.620 23 C 0.071 3.929 24 C 0.039 3.961 25 O -0.396 6.396 26 C 0.052 3.948 27 C 0.075 3.925 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.415 0.585 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.348 0.652 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.055 0.945 43 H 0.131 0.869 44 H 0.049 0.951 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 17.759 -27.174 36.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.022 4.022 3 H 0.128 0.872 4 C 0.004 3.996 5 N -0.350 5.350 6 C 0.315 3.685 7 O -0.451 6.451 8 C -0.279 4.279 9 S 0.077 5.923 10 C -0.696 4.696 11 H 0.099 0.901 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.188 1.188 18 N -0.320 5.320 19 C -0.083 4.083 20 C 0.297 3.703 21 O -0.451 6.451 22 N -0.356 5.356 23 C -0.051 4.051 24 C -0.038 4.038 25 O -0.315 6.315 26 C -0.025 4.025 27 C -0.048 4.048 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.252 0.748 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.067 0.933 45 H 0.139 0.861 46 H 0.100 0.900 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.169 16.477 -25.440 34.835 hybrid contribution 1.024 -0.023 -1.203 1.580 sum -16.145 16.454 -26.643 35.231 Atomic orbital electron populations 1.22384 0.94353 1.02817 1.03944 1.21751 0.94452 0.98334 0.87647 0.87215 1.21474 0.79277 1.00465 0.98364 1.45556 1.07932 1.59008 1.22524 1.20022 0.88792 0.77267 0.82377 1.90674 1.70435 1.48897 1.35134 1.23350 0.95247 1.05534 1.03794 1.85517 1.05788 1.75284 1.25714 1.23172 0.91711 1.44519 1.10163 0.90109 1.26154 1.05324 0.93745 0.94001 1.70187 1.37483 1.36455 1.10619 0.84988 0.75572 0.79145 0.78184 1.18494 1.20221 1.18847 1.60144 1.59202 1.09490 1.03174 1.21947 1.02945 0.95715 0.87698 1.21255 0.77109 0.87154 0.84737 1.90741 1.51346 1.18235 1.84755 1.48294 1.65966 1.12147 1.09167 1.22802 0.98978 0.78816 1.04513 1.23294 0.96468 0.97471 0.86524 1.87960 1.86204 1.25700 1.31642 1.22998 0.94705 0.82280 1.02545 1.22280 0.98295 0.97161 0.87028 0.90711 0.90275 0.92723 0.91267 0.93483 0.74804 0.88140 0.87296 0.91966 0.83225 0.85715 0.88983 0.89138 0.85976 0.92622 0.85159 0.93255 0.86115 0.89970 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.16 71.98 0.66 -0.86 16 2 C 0.09 1.06 2.75 44.91 0.12 1.19 16 3 H 0.11 0.88 7.80 -2.39 -0.02 0.86 16 4 C 0.13 2.85 5.37 86.38 0.46 3.31 16 5 N -0.70 -19.16 5.39 -463.07 -2.50 -21.65 16 6 C 0.53 20.99 7.85 87.66 0.69 21.68 16 7 O -0.57 -27.91 15.86 -3.05 -0.05 -27.95 16 8 C -0.13 -5.46 6.16 71.23 0.44 -5.02 16 9 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 10 C -0.55 -32.39 9.50 67.96 0.65 -31.74 16 11 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 12 C 0.01 0.73 5.49 84.86 0.47 1.19 16 13 N -0.91 -57.26 13.22 21.65 0.29 -56.98 16 14 Si 1.00 44.70 29.55 68.60 2.03 46.73 16 15 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 N -0.69 -10.12 5.31 -495.59 -2.63 -12.75 16 19 C 0.05 0.44 4.34 85.56 0.37 0.81 16 20 C 0.51 8.47 7.75 87.66 0.68 9.15 16 21 O -0.57 -15.70 15.67 -3.04 -0.05 -15.75 16 22 N -0.62 -7.47 3.01 -816.44 -2.46 -9.93 16 23 C 0.07 0.31 6.56 86.50 0.57 0.87 16 24 C 0.04 0.24 7.00 72.22 0.51 0.74 16 25 O -0.40 -4.78 10.74 -148.98 -1.60 -6.38 16 26 C 0.05 0.58 6.99 72.10 0.50 1.09 16 27 C 0.08 0.99 6.64 86.37 0.57 1.56 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.38 7.45 -2.38 -0.02 0.36 16 30 H 0.05 0.60 8.13 -2.39 -0.02 0.58 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 9.42 8.14 -92.71 -0.75 8.67 16 34 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 35 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.35 6.13 8.17 -89.69 -0.73 5.39 16 38 H 0.13 0.60 7.59 -2.38 -0.02 0.58 16 39 H 0.09 0.30 7.30 -2.39 -0.02 0.28 16 40 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.12 -0.15 6.06 -2.39 -0.01 -0.16 16 42 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 46 H 0.08 1.45 7.08 -2.39 -0.02 1.43 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -88.55 399.60 -1.95 -90.50 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.50 Total: 20.06 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.69 Total: 3.97 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -7.30 Total: -101.32 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -1.70 Total: -50.08 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -88.55 -1.95 -90.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.589 kcal (2) G-P(sol) polarization free energy of solvation -88.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds