Wall clock time and date at job start Wed Apr 1 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99875 * 2 1 4 4 O 1.21582 * 119.99664 * 175.48389 * 3 2 1 5 5 C 1.47609 * 120.00320 * 355.48691 * 3 2 1 6 6 C 1.39720 * 120.05306 * 221.28427 * 5 3 2 7 7 C 1.37848 * 120.10859 * 179.69613 * 6 5 3 8 8 C 1.38695 * 120.07349 * 0.58738 * 7 6 5 9 9 C 1.39674 * 120.10060 * 359.69140 * 8 7 6 10 10 C 1.38091 * 120.12215 * 0.02562 * 9 8 7 11 11 N 1.40274 * 119.24384 * 179.97438 * 9 8 7 12 12 C 1.35081 * 118.96669 * 15.49283 * 11 9 8 13 13 O 1.21301 * 120.13362 * 181.67192 * 12 11 9 14 14 C 1.50747 * 119.72739 * 1.65551 * 12 11 9 15 15 O 1.35844 * 120.50570 * 179.73516 * 8 7 6 16 16 C 1.46495 * 119.99799 * 179.97438 * 2 1 3 17 17 C 1.53784 * 113.61573 * 60.00237 * 16 2 1 18 18 C 1.53782 * 87.08318 * 220.01579 * 17 16 2 19 19 N 1.46496 * 113.61328 * 139.97742 * 18 17 16 20 20 C 1.36934 * 119.99941 * 155.00222 * 19 18 17 21 21 H 1.07996 * 120.00199 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00218 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99546 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47634 * 59.99587 * 24 22 20 26 26 H 1.48500 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.47159 * 299.99431 * 24 22 20 28 28 C 1.53777 * 113.61720 * 322.50356 * 16 2 1 29 29 H 1.08997 * 109.47246 * 275.14603 * 1 2 3 30 30 H 1.09003 * 109.46743 * 35.14092 * 1 2 3 31 31 H 1.08991 * 109.47100 * 155.14326 * 1 2 3 32 32 H 1.07994 * 119.94297 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.96262 * 180.25445 * 7 6 5 34 34 H 1.07998 * 120.15256 * 179.97438 * 10 9 8 35 35 H 0.97000 * 120.51275 * 195.52206 * 11 9 8 36 36 H 1.09002 * 109.43995 * 88.68027 * 14 12 11 37 37 H 1.08993 * 109.44564 * 208.60649 * 14 12 11 38 38 H 1.09004 * 112.90795 * 191.25579 * 16 2 1 39 39 H 1.09001 * 113.61091 * 105.46798 * 17 16 2 40 40 H 1.09000 * 113.60867 * 334.56560 * 17 16 2 41 41 H 1.08998 * 113.61519 * 270.88651 * 18 17 16 42 42 H 0.97005 * 119.99878 * 335.00630 * 19 18 17 43 43 H 0.97005 * 120.00007 * 180.02562 * 23 22 20 44 44 H 1.09007 * 113.61643 * 25.43589 * 28 16 2 45 45 H 1.08999 * 113.61905 * 254.52827 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1688 0.0829 5 6 1.4043 2.4436 -0.1006 6 6 1.8963 3.4723 -0.9080 7 6 1.2080 4.6625 -1.0076 8 6 0.0312 4.8464 -0.2970 9 6 -0.4629 3.8241 0.5165 10 6 0.2186 2.6273 0.6163 11 7 -1.6544 4.0297 1.2277 12 6 -2.4550 5.0602 0.8788 13 8 -3.4751 5.2758 1.4988 14 6 -2.0754 5.9415 -0.2838 15 8 -0.6514 6.0177 -0.3845 16 6 2.1974 -1.2687 0.0006 17 6 1.8954 -2.1550 -1.2193 18 6 1.9129 -3.3527 -0.2549 19 7 0.8716 -4.3450 -0.5326 20 6 1.0454 -5.6467 -0.1446 21 1 1.9503 -5.9419 0.3657 22 6 0.0589 -6.5871 -0.4082 23 7 -1.0436 -6.2275 -1.0306 24 14 0.2957 -8.3626 0.1216 25 1 0.4625 -8.4213 1.5961 26 1 -0.8931 -9.1599 -0.2737 27 1 1.5059 -8.9183 -0.5359 28 6 1.5373 -2.3608 0.8587 29 1 -0.3633 0.0922 1.0235 30 1 -0.3633 0.8404 -0.5915 31 1 -0.3633 -0.9324 -0.4319 32 1 2.8150 3.3331 -1.4583 33 1 1.5883 5.4546 -1.6357 34 1 -0.1628 1.8367 1.2454 35 1 -1.8993 3.4412 1.9588 36 1 -2.4821 5.5228 -1.2043 37 1 -2.4817 6.9410 -0.1294 38 1 3.2624 -1.1437 0.1965 39 1 2.6998 -2.1747 -1.9546 40 1 0.9182 -1.9670 -1.6643 41 1 2.9000 -3.7973 -0.1288 42 1 0.0590 -4.0800 -0.9913 43 1 -1.7331 -6.8846 -1.2145 44 1 0.4623 -2.2291 0.9818 45 1 2.0527 -2.5467 1.8010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998934708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:25 Heat of formation + Delta-G solvation = -23.652058 kcal Electronic energy + Delta-G solvation = -29490.463010 eV Core-core repulsion = 25282.068984 eV Total energy + Delta-G solvation = -4208.394026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99109 -40.48824 -39.22035 -38.36037 -37.48273 -35.58139 -34.96940 -33.23682 -31.29941 -30.38575 -29.93593 -28.40984 -27.22062 -25.34431 -25.12655 -24.13380 -23.41667 -22.64233 -20.87436 -19.69482 -19.23427 -18.91368 -18.17481 -17.67803 -17.15781 -17.09357 -16.53655 -16.42624 -15.63303 -15.51294 -15.17831 -14.98977 -14.79221 -14.63429 -14.32407 -14.08585 -13.65673 -13.55150 -13.17953 -13.08707 -13.06451 -12.79970 -12.39397 -12.14261 -11.90879 -11.77857 -11.66159 -11.30756 -11.28068 -10.93363 -10.66465 -10.63538 -10.52624 -10.34359 -10.10150 -9.90621 -9.61796 -9.19192 -8.94521 -8.61410 -8.44848 -7.04619 -5.85075 -3.14146 0.34678 0.62692 1.72014 2.19102 2.48228 2.71439 2.91470 3.25622 3.39759 3.43665 3.44687 3.45247 4.00091 4.23153 4.35254 4.52243 4.53934 4.62645 4.71658 4.87906 5.01058 5.03136 5.10591 5.15551 5.27758 5.33795 5.36854 5.43169 5.53147 5.64133 5.79616 5.84520 5.89050 5.93339 6.02540 6.08545 6.21388 6.23560 6.27245 6.35735 6.49887 6.69177 6.70920 6.95798 7.23308 7.37466 7.63837 8.04215 8.33302 9.44779 10.00787 10.35328 11.37153 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.002175 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.143615 B =12871.081769 C =14085.757054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.590 5.590 3 C 0.558 3.442 4 O -0.535 6.535 5 C -0.114 4.114 6 C -0.054 4.054 7 C -0.112 4.112 8 C 0.096 3.904 9 C 0.085 3.915 10 C -0.095 4.095 11 N -0.658 5.658 12 C 0.491 3.509 13 O -0.509 6.509 14 C 0.050 3.950 15 O -0.300 6.300 16 C 0.115 3.885 17 C -0.163 4.163 18 C 0.170 3.830 19 N -0.709 5.709 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.175 4.175 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.419 0.581 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.083 0.917 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 25.735 -0.184 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.320 5.320 3 C 0.346 3.654 4 O -0.413 6.413 5 C -0.118 4.118 6 C -0.074 4.074 7 C -0.131 4.131 8 C 0.049 3.951 9 C -0.010 4.010 10 C -0.116 4.116 11 N -0.306 5.306 12 C 0.278 3.722 13 O -0.384 6.384 14 C -0.028 4.028 15 O -0.214 6.214 16 C 0.012 3.988 17 C -0.203 4.203 18 C 0.057 3.943 19 N -0.347 5.347 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.217 4.217 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.258 0.742 36 H 0.121 0.879 37 H 0.165 0.835 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.748 25.956 0.106 25.967 hybrid contribution -0.682 -1.349 0.612 1.631 sum 0.067 24.607 0.718 24.617 Atomic orbital electron populations 1.22085 0.79724 1.04165 1.01437 1.47786 1.06934 1.05789 1.71519 1.18170 0.87048 0.83372 0.76844 1.90795 1.13403 1.87159 1.49943 1.19771 0.95620 0.95639 1.00766 1.21053 0.99048 0.90660 0.96610 1.20492 0.94443 0.98437 0.99717 1.18824 0.94571 0.84650 0.97050 1.17849 0.89625 0.95471 0.98057 1.21070 0.94461 0.95392 1.00649 1.43739 1.19864 1.31692 1.35301 1.21531 0.83357 0.80950 0.86353 1.90843 1.24490 1.70038 1.53000 1.23241 0.79889 1.02881 0.96783 1.86221 1.18189 1.27375 1.89594 1.22686 0.97352 0.79916 0.98811 1.23944 1.01919 0.97197 0.97215 1.21336 0.93811 0.87287 0.91878 1.42341 1.18440 1.05248 1.68668 1.19264 1.02100 0.85220 1.31097 0.91024 1.24764 0.96643 0.98310 1.01057 1.69640 1.08210 1.33851 1.46378 0.86257 0.76885 0.84718 0.78253 1.21201 1.21681 1.21163 1.24349 1.01008 0.96572 0.99759 0.92418 0.90955 0.89570 0.83736 0.83496 0.83570 0.74177 0.87894 0.83492 0.86583 0.91613 0.90042 0.90178 0.78121 0.93367 0.89878 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 7.63 59.85 0.46 1.15 16 2 N -0.59 -7.39 3.08 -174.21 -0.54 -7.92 16 3 C 0.56 7.27 7.31 -12.44 -0.09 7.18 16 4 O -0.54 -8.75 16.42 5.29 0.09 -8.66 16 5 C -0.11 -1.14 5.15 -104.95 -0.54 -1.68 16 6 C -0.05 -0.46 9.63 -39.17 -0.38 -0.84 16 7 C -0.11 -0.80 9.98 -39.56 -0.39 -1.20 16 8 C 0.10 0.76 6.45 -38.88 -0.25 0.51 16 9 C 0.09 0.68 6.54 -83.51 -0.55 0.13 16 10 C -0.09 -0.78 7.51 -39.06 -0.29 -1.07 16 11 N -0.66 -4.95 5.47 -9.68 -0.05 -5.01 16 12 C 0.49 4.13 7.94 -10.83 -0.09 4.04 16 13 O -0.51 -5.94 17.95 5.54 0.10 -5.84 16 14 C 0.05 0.28 7.16 36.03 0.26 0.54 16 15 O -0.30 -2.21 10.44 -19.25 -0.20 -2.41 16 16 C 0.12 1.66 4.22 -67.12 -0.28 1.38 16 17 C -0.16 -2.54 7.35 -25.92 -0.19 -2.73 16 18 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 19 N -0.71 -16.84 5.40 -52.64 -0.28 -17.13 16 20 C -0.25 -6.58 9.97 -15.06 -0.15 -6.73 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 C -0.17 -2.79 7.28 -25.92 -0.19 -2.98 16 29 H 0.06 0.49 6.85 -51.93 -0.36 0.14 16 30 H 0.07 0.60 5.99 -51.93 -0.31 0.29 16 31 H 0.09 0.97 6.14 -51.93 -0.32 0.65 16 32 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.15 1.03 5.53 -52.49 -0.29 0.74 16 35 H 0.42 2.62 8.89 -40.82 -0.36 2.25 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.12 1.76 7.22 -51.93 -0.37 1.38 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.28 6.97 -51.93 -0.36 0.92 16 41 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 42 H 0.38 9.64 7.92 -40.82 -0.32 9.31 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.08 1.35 6.60 -51.93 -0.34 1.01 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -33.73 371.83 -8.20 -41.93 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.54 Total: 9.03 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.07 Total: 0.14 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.15 Total: -56.58 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.01 Total: -16.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.73 -8.20 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998934708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.279 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds