Wall clock time and date at job start Wed Apr 1 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99875 * 2 1 4 4 O 1.21582 * 119.99664 * 175.48389 * 3 2 1 5 5 C 1.47609 * 120.00320 * 355.48691 * 3 2 1 6 6 C 1.39720 * 120.05306 * 221.28427 * 5 3 2 7 7 C 1.37848 * 120.10859 * 179.69613 * 6 5 3 8 8 C 1.38695 * 120.07349 * 0.58738 * 7 6 5 9 9 C 1.39674 * 120.10060 * 359.69140 * 8 7 6 10 10 C 1.38091 * 120.12215 * 0.02562 * 9 8 7 11 11 N 1.40274 * 119.24384 * 179.97438 * 9 8 7 12 12 C 1.35081 * 118.96669 * 15.49283 * 11 9 8 13 13 O 1.21301 * 120.13362 * 181.67192 * 12 11 9 14 14 C 1.50747 * 119.72739 * 1.65551 * 12 11 9 15 15 O 1.35844 * 120.50570 * 179.73516 * 8 7 6 16 16 C 1.46495 * 119.99799 * 179.97438 * 2 1 3 17 17 C 1.53784 * 113.61573 * 60.00237 * 16 2 1 18 18 C 1.53782 * 87.08318 * 220.01579 * 17 16 2 19 19 N 1.46496 * 113.61328 * 139.97742 * 18 17 16 20 20 C 1.36934 * 119.99941 * 155.00222 * 19 18 17 21 21 H 1.07996 * 120.00199 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00218 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99546 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47634 * 59.99587 * 24 22 20 26 26 H 1.48500 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.47159 * 299.99431 * 24 22 20 28 28 C 1.53777 * 113.61720 * 322.50356 * 16 2 1 29 29 H 1.08997 * 109.47246 * 275.14603 * 1 2 3 30 30 H 1.09003 * 109.46743 * 35.14092 * 1 2 3 31 31 H 1.08991 * 109.47100 * 155.14326 * 1 2 3 32 32 H 1.07994 * 119.94297 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.96262 * 180.25445 * 7 6 5 34 34 H 1.07998 * 120.15256 * 179.97438 * 10 9 8 35 35 H 0.97000 * 120.51275 * 195.52206 * 11 9 8 36 36 H 1.09002 * 109.43995 * 88.68027 * 14 12 11 37 37 H 1.08993 * 109.44564 * 208.60649 * 14 12 11 38 38 H 1.09004 * 112.90795 * 191.25579 * 16 2 1 39 39 H 1.09001 * 113.61091 * 105.46798 * 17 16 2 40 40 H 1.09000 * 113.60867 * 334.56560 * 17 16 2 41 41 H 1.08998 * 113.61519 * 270.88651 * 18 17 16 42 42 H 0.97005 * 119.99878 * 335.00630 * 19 18 17 43 43 H 0.97005 * 120.00007 * 180.02562 * 23 22 20 44 44 H 1.09007 * 113.61643 * 25.43589 * 28 16 2 45 45 H 1.08999 * 113.61905 * 254.52827 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1688 0.0829 5 6 1.4043 2.4436 -0.1006 6 6 1.8963 3.4723 -0.9080 7 6 1.2080 4.6625 -1.0076 8 6 0.0312 4.8464 -0.2970 9 6 -0.4629 3.8241 0.5165 10 6 0.2186 2.6273 0.6163 11 7 -1.6544 4.0297 1.2277 12 6 -2.4550 5.0602 0.8788 13 8 -3.4751 5.2758 1.4988 14 6 -2.0754 5.9415 -0.2838 15 8 -0.6514 6.0177 -0.3845 16 6 2.1974 -1.2687 0.0006 17 6 1.8954 -2.1550 -1.2193 18 6 1.9129 -3.3527 -0.2549 19 7 0.8716 -4.3450 -0.5326 20 6 1.0454 -5.6467 -0.1446 21 1 1.9503 -5.9419 0.3657 22 6 0.0589 -6.5871 -0.4082 23 7 -1.0436 -6.2275 -1.0306 24 14 0.2957 -8.3626 0.1216 25 1 0.4625 -8.4213 1.5961 26 1 -0.8931 -9.1599 -0.2737 27 1 1.5059 -8.9183 -0.5359 28 6 1.5373 -2.3608 0.8587 29 1 -0.3633 0.0922 1.0235 30 1 -0.3633 0.8404 -0.5915 31 1 -0.3633 -0.9324 -0.4319 32 1 2.8150 3.3331 -1.4583 33 1 1.5883 5.4546 -1.6357 34 1 -0.1628 1.8367 1.2454 35 1 -1.8993 3.4412 1.9588 36 1 -2.4821 5.5228 -1.2043 37 1 -2.4817 6.9410 -0.1294 38 1 3.2624 -1.1437 0.1965 39 1 2.6998 -2.1747 -1.9546 40 1 0.9182 -1.9670 -1.6643 41 1 2.9000 -3.7973 -0.1288 42 1 0.0590 -4.0800 -0.9913 43 1 -1.7331 -6.8846 -1.2145 44 1 0.4623 -2.2291 0.9818 45 1 2.0527 -2.5467 1.8010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998934708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:23 Heat of formation + Delta-G solvation = -47.537156 kcal Electronic energy + Delta-G solvation = -29491.498746 eV Core-core repulsion = 25282.068984 eV Total energy + Delta-G solvation = -4209.429762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.60938 -41.49448 -40.03399 -39.40872 -38.27702 -36.28602 -36.22568 -34.92834 -32.30882 -31.51345 -31.00613 -28.98256 -28.15702 -26.70377 -26.39243 -25.44959 -24.05121 -23.85679 -21.85613 -20.47872 -20.31946 -19.82671 -19.04200 -18.86809 -18.42349 -17.95395 -17.46766 -17.20386 -16.54568 -16.43248 -16.19207 -16.07694 -15.78788 -15.61351 -15.40851 -15.05255 -14.82741 -14.55199 -14.27826 -14.14679 -13.96015 -13.73302 -13.48285 -13.28522 -13.13973 -13.11436 -12.75967 -12.40298 -12.33561 -12.28490 -12.14772 -11.98306 -11.95580 -11.67144 -11.42759 -11.31804 -10.94978 -10.85302 -9.81624 -9.66505 -9.12202 -8.98186 -7.94439 -5.22223 -0.33168 0.01145 1.09654 1.49024 1.50768 1.56774 1.58883 1.63102 1.89634 2.19986 2.56419 2.57712 2.86763 3.31696 3.37397 3.49836 3.75102 3.79606 3.94564 3.98083 3.99125 4.07943 4.14848 4.17879 4.28949 4.29291 4.37107 4.50333 4.63489 4.71735 4.77144 4.79869 4.88804 4.89123 4.95934 5.06249 5.15299 5.23353 5.35199 5.40152 5.43205 5.52012 5.64427 5.65870 6.11983 6.27643 6.35416 6.63260 7.03069 7.34726 8.09996 8.33639 9.28350 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.002175 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.143615 B =12871.081769 C =14085.757054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.590 5.590 3 C 0.559 3.441 4 O -0.574 6.574 5 C -0.131 4.131 6 C -0.054 4.054 7 C -0.105 4.105 8 C 0.096 3.904 9 C 0.083 3.917 10 C -0.087 4.087 11 N -0.655 5.655 12 C 0.489 3.511 13 O -0.548 6.548 14 C 0.051 3.949 15 O -0.303 6.303 16 C 0.131 3.869 17 C -0.149 4.149 18 C 0.152 3.848 19 N -0.722 5.722 20 C -0.244 4.244 21 H 0.076 0.924 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.969 3.031 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.279 1.279 28 C -0.161 4.161 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.157 0.843 35 H 0.422 0.578 36 H 0.127 0.873 37 H 0.169 0.831 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.082 0.918 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 27.454 -0.241 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.319 5.319 3 C 0.348 3.652 4 O -0.455 6.455 5 C -0.135 4.135 6 C -0.074 4.074 7 C -0.123 4.123 8 C 0.049 3.951 9 C -0.013 4.013 10 C -0.108 4.108 11 N -0.302 5.302 12 C 0.277 3.723 13 O -0.425 6.425 14 C -0.026 4.026 15 O -0.217 6.217 16 C 0.027 3.973 17 C -0.189 4.189 18 C 0.041 3.959 19 N -0.360 5.360 20 C -0.376 4.376 21 H 0.094 0.906 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.799 3.201 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.205 1.205 28 C -0.203 4.203 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.174 0.826 35 H 0.263 0.737 36 H 0.145 0.855 37 H 0.186 0.814 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.929 27.705 0.062 27.721 hybrid contribution -0.678 -1.764 0.633 1.993 sum 0.251 25.941 0.696 25.952 Atomic orbital electron populations 1.22261 0.78078 1.04348 1.02921 1.47784 1.07884 1.05045 1.71235 1.18588 0.86693 0.84189 0.75688 1.90771 1.15162 1.87766 1.51787 1.19559 0.96503 0.94641 1.02775 1.21154 0.99177 0.90770 0.96250 1.20678 0.93815 0.98376 0.99459 1.19017 0.94732 0.84698 0.96618 1.17844 0.89675 0.95486 0.98275 1.21056 0.93742 0.95818 1.00221 1.43756 1.19622 1.31607 1.35256 1.22050 0.82697 0.80961 0.86566 1.90829 1.26146 1.71101 1.54468 1.23488 0.78982 1.03709 0.96443 1.86226 1.19066 1.27003 1.89372 1.22320 0.97156 0.80625 0.97158 1.23779 1.02199 0.95663 0.97292 1.21634 0.92500 0.87381 0.94357 1.42473 1.19251 1.05314 1.68918 1.19646 1.01762 0.86572 1.29622 0.90597 1.25509 0.96794 1.02048 1.02207 1.69784 1.09030 1.34633 1.48362 0.85274 0.76509 0.80320 0.78030 1.20516 1.22321 1.20525 1.24112 1.01102 0.95986 0.99090 0.90623 0.88971 0.90839 0.83484 0.81117 0.82598 0.73729 0.85511 0.81358 0.87061 0.91063 0.89982 0.90416 0.79218 0.94032 0.89981 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 7.63 127.77 0.97 2.19 16 2 N -0.59 -14.08 3.08 -823.33 -2.54 -16.62 16 3 C 0.56 14.00 7.31 86.72 0.63 14.63 16 4 O -0.57 -18.55 16.42 -3.97 -0.07 -18.61 16 5 C -0.13 -2.40 5.15 -20.07 -0.10 -2.50 16 6 C -0.05 -0.82 9.63 22.54 0.22 -0.60 16 7 C -0.10 -1.21 9.98 22.29 0.22 -0.99 16 8 C 0.10 1.27 6.45 22.73 0.15 1.42 16 9 C 0.08 1.13 6.54 38.10 0.25 1.38 16 10 C -0.09 -1.26 7.51 22.61 0.17 -1.09 16 11 N -0.66 -8.71 5.47 -302.76 -1.66 -10.37 16 12 C 0.49 7.38 7.94 87.62 0.70 8.08 16 13 O -0.55 -12.30 17.95 -3.09 -0.06 -12.36 16 14 C 0.05 0.43 7.16 71.25 0.51 0.94 16 15 O -0.30 -3.57 10.44 -91.80 -0.96 -4.53 16 16 C 0.13 3.68 4.22 45.52 0.19 3.87 16 17 C -0.15 -4.58 7.35 31.12 0.23 -4.35 16 18 C 0.15 5.62 4.48 45.52 0.20 5.82 16 19 N -0.72 -34.53 5.40 -320.45 -1.73 -36.26 16 20 C -0.24 -13.10 9.97 84.04 0.84 -12.26 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 23 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 24 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 C -0.16 -5.05 7.28 31.12 0.23 -4.82 16 29 H 0.08 1.14 6.85 -2.39 -0.02 1.12 16 30 H 0.09 1.35 5.99 -2.39 -0.01 1.33 16 31 H 0.07 1.58 6.14 -2.39 -0.01 1.57 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.16 1.86 5.53 -2.91 -0.02 1.84 16 35 H 0.42 4.71 8.89 -92.71 -0.82 3.88 16 36 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.17 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 3.30 7.22 -2.38 -0.02 3.29 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.53 6.97 -2.39 -0.02 2.51 16 41 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 42 H 0.38 19.12 7.92 -92.70 -0.73 18.38 16 43 H 0.25 14.54 8.31 -92.70 -0.77 13.76 16 44 H 0.08 2.61 6.60 -2.38 -0.02 2.59 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.82 371.83 0.69 -72.13 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.49 Total: 28.52 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.87 Total: 8.08 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -5.64 Total: -120.37 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.08 Total: -35.50 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.82 0.69 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998934708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.597 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds