Wall clock time and date at job start Wed Apr 1 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00317 * 2 1 4 4 C 1.53000 * 109.46937 * 264.93719 * 3 2 1 5 5 H 1.09010 * 112.96442 * 294.16044 * 4 3 2 6 6 C 1.53942 * 113.77420 * 65.84171 * 4 3 2 7 7 C 1.53936 * 86.29228 * 137.90648 * 6 4 3 8 8 N 1.47582 * 113.76967 * 162.48811 * 4 3 2 9 9 C 1.36929 * 134.49349 * 41.06233 * 8 4 3 10 10 H 1.08000 * 120.00089 * 4.67992 * 9 8 4 11 11 C 1.38816 * 120.00129 * 184.67828 * 9 8 4 12 12 N 1.31617 * 119.99999 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99964 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47489 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47331 * 120.00426 * 13 11 9 16 16 H 1.48506 * 109.46921 * 239.99973 * 13 11 9 17 17 C 1.34773 * 119.99437 * 180.02562 * 2 1 3 18 18 O 1.21588 * 120.00099 * 183.64627 * 17 2 1 19 19 C 1.47600 * 120.00536 * 3.64763 * 17 2 1 20 20 C 1.39729 * 120.02999 * 328.87461 * 19 17 2 21 21 C 1.37811 * 120.05850 * 180.02562 * 20 19 17 22 22 C 1.38815 * 120.02274 * 0.02562 * 21 20 19 23 23 C 1.39682 * 120.19812 * 359.72909 * 22 21 20 24 24 C 1.37978 * 120.01367 * 0.53491 * 23 22 21 25 25 O 1.36033 * 119.44831 * 179.63614 * 23 22 21 26 26 C 1.43005 * 116.80114 * 327.73455 * 25 23 22 27 27 C 1.50755 * 109.59331 * 46.10324 * 26 25 23 28 28 O 1.21280 * 120.10706 * 148.68334 * 27 26 25 29 29 N 1.35049 * 119.77942 * 328.70642 * 27 26 25 30 30 H 1.08996 * 109.47491 * 274.19557 * 1 2 3 31 31 H 1.09007 * 109.46777 * 34.18673 * 1 2 3 32 32 H 1.08998 * 109.47617 * 154.18580 * 1 2 3 33 33 H 1.08995 * 109.47052 * 24.93331 * 3 2 1 34 34 H 1.09001 * 109.46892 * 144.93659 * 3 2 1 35 35 H 1.08996 * 113.74450 * 252.25701 * 6 4 3 36 36 H 1.09004 * 113.73658 * 23.45381 * 6 4 3 37 37 H 1.09002 * 113.76976 * 90.69484 * 7 6 4 38 38 H 1.08999 * 113.77313 * 221.97997 * 7 6 4 39 39 H 0.96992 * 120.00401 * 179.97438 * 12 11 9 40 40 H 1.07997 * 119.96747 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.98983 * 180.02562 * 21 20 19 42 42 H 1.07996 * 120.11087 * 179.74581 * 24 23 22 43 43 H 1.09001 * 109.44720 * 286.06938 * 26 25 23 44 44 H 1.08997 * 109.45390 * 166.14488 * 26 25 23 45 45 H 0.97004 * 120.45836 * 181.64104 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5628 1.6466 -1.4369 5 1 3.2711 0.9541 -1.8919 6 6 1.3450 1.9610 -2.3246 7 6 2.1738 3.1367 -2.8727 8 7 2.9286 3.0666 -1.6038 9 6 3.6688 3.9589 -0.8751 10 1 4.1944 3.6297 0.0090 11 6 3.7436 5.2868 -1.2728 12 7 3.1026 5.6882 -2.3500 13 14 4.7538 6.5039 -0.2791 14 1 5.3711 5.8069 0.8777 15 1 5.8202 7.0793 -1.1375 16 1 3.8727 7.5934 0.2128 17 6 2.1387 -1.1672 -0.0005 18 8 3.3527 -1.1685 0.0664 19 6 1.4029 -2.4442 -0.0824 20 6 0.1240 -2.5510 0.4701 21 6 -0.5633 -3.7431 0.3945 22 6 0.0147 -4.8396 -0.2305 23 6 1.2908 -4.7378 -0.7893 24 6 1.9855 -3.5482 -0.7116 25 8 1.8457 -5.8240 -1.3916 26 6 1.5002 -7.1046 -0.8569 27 6 0.0109 -7.1739 -0.6335 28 8 -0.5717 -8.2323 -0.7404 29 7 -0.6724 -6.0536 -0.3142 30 1 -0.3634 0.0752 1.0248 31 1 -0.3633 0.8502 -0.5775 32 1 -0.3634 -0.9251 -0.4475 33 1 1.5722 2.0493 0.4332 34 1 3.1076 1.1627 0.5904 35 1 1.1318 1.1910 -3.0660 36 1 0.4615 2.2680 -1.7647 37 1 2.7687 2.8834 -3.7502 38 1 1.6026 4.0566 -2.9972 39 1 3.1546 6.6161 -2.6277 40 1 -0.3259 -1.6988 0.9576 41 1 -1.5520 -3.8243 0.8216 42 1 2.9739 -3.4690 -1.1395 43 1 2.0168 -7.2533 0.0913 44 1 1.7986 -7.8835 -1.5585 45 1 -1.6268 -6.0912 -0.1451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:31 Heat of formation + Delta-G solvation = -13.457048 kcal Electronic energy + Delta-G solvation = -29758.510373 eV Core-core repulsion = 25550.558436 eV Total energy + Delta-G solvation = -4207.951937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.60405 -41.34456 -39.94485 -39.43501 -38.36801 -36.61921 -36.21675 -34.22049 -32.01981 -31.52748 -29.86011 -29.83679 -28.64440 -27.67595 -25.34206 -25.15770 -24.60443 -23.54049 -21.45348 -21.09667 -20.64797 -19.60111 -19.03650 -18.74397 -18.36195 -17.59685 -17.37516 -17.00404 -16.76479 -16.47584 -16.37648 -15.94080 -15.69919 -15.58606 -15.25946 -15.10630 -14.96780 -14.42153 -14.22843 -14.14004 -13.93689 -13.81015 -13.68782 -13.35176 -13.00094 -12.85348 -12.61396 -12.50243 -12.47901 -12.23075 -12.07003 -11.80181 -11.77605 -11.54311 -11.33907 -11.27083 -10.91173 -10.82953 -9.85871 -9.60711 -9.08761 -8.88355 -7.87888 -5.22449 -0.41593 0.15625 1.00041 1.45359 1.46617 1.56670 1.60644 1.71728 1.93467 2.25406 2.49753 2.65103 2.85588 3.31457 3.40434 3.48597 3.52952 3.88419 3.96234 4.00042 4.08251 4.13746 4.21227 4.31212 4.33236 4.38761 4.54301 4.64096 4.69598 4.82390 4.86975 4.90608 4.93358 4.99678 5.06915 5.09825 5.20765 5.24803 5.33654 5.41991 5.50703 5.59122 5.65304 5.75033 5.97481 6.14210 6.42260 6.63322 6.94569 7.13041 7.62906 8.59058 9.28128 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028693 B = 0.002098 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.606224 B =13344.704683 C =13470.413539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.594 5.594 3 C 0.135 3.865 4 C 0.130 3.870 5 H 0.024 0.976 6 C -0.121 4.121 7 C 0.145 3.855 8 N -0.630 5.630 9 C -0.228 4.228 10 H 0.077 0.923 11 C -0.066 4.066 12 N -0.951 5.951 13 Si 0.975 3.025 14 H -0.268 1.268 15 H -0.296 1.296 16 H -0.287 1.287 17 C 0.550 3.450 18 O -0.586 6.586 19 C -0.128 4.128 20 C -0.077 4.077 21 C -0.111 4.111 22 C 0.116 3.884 23 C 0.060 3.940 24 C -0.066 4.066 25 O -0.314 6.314 26 C 0.047 3.953 27 C 0.492 3.508 28 O -0.543 6.543 29 N -0.648 5.648 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.007 0.993 38 H 0.053 0.947 39 H 0.248 0.752 40 H 0.183 0.817 41 H 0.183 0.817 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.166 0.834 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 -24.182 6.961 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.325 5.325 3 C 0.011 3.989 4 C 0.023 3.977 5 H 0.042 0.958 6 C -0.158 4.158 7 C 0.020 3.980 8 N -0.356 5.356 9 C -0.356 4.356 10 H 0.095 0.905 11 C -0.259 4.259 12 N -0.600 5.600 13 Si 0.803 3.197 14 H -0.193 1.193 15 H -0.223 1.223 16 H -0.213 1.213 17 C 0.340 3.660 18 O -0.467 6.467 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.131 4.131 22 C 0.019 3.981 23 C 0.013 3.987 24 C -0.086 4.086 25 O -0.229 6.229 26 C -0.030 4.030 27 C 0.280 3.720 28 O -0.420 6.420 29 N -0.295 5.295 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.200 0.800 41 H 0.200 0.800 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.183 0.817 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -13.765 -24.520 6.826 28.936 hybrid contribution 0.892 0.964 0.084 1.316 sum -12.873 -23.556 6.909 27.719 Atomic orbital electron populations 1.22934 0.76776 1.05720 1.04007 1.47700 1.08743 1.04441 1.71571 1.21349 0.96627 0.84481 0.96459 1.22587 0.94160 0.85771 0.95189 0.95809 1.23505 0.96541 0.97286 0.98505 1.22304 0.91321 0.96834 0.87577 1.46492 1.60110 1.06216 1.22816 1.19366 1.22072 0.88855 1.05319 0.90538 1.25576 1.02372 0.98602 0.99333 1.70002 1.47671 1.15709 1.26663 0.85063 0.77730 0.78947 0.77921 1.19272 1.22328 1.21338 1.18699 0.86667 0.84578 0.76044 1.90796 1.15963 1.87924 1.52002 1.19492 0.96647 0.92355 1.04719 1.22066 0.91282 0.99306 0.96874 1.20985 1.02640 0.89781 0.99730 1.18315 0.91551 0.87848 1.00354 1.18376 0.91575 0.88702 1.00012 1.20398 0.99436 0.90318 0.98463 1.86281 1.68685 1.12824 1.55111 1.23479 0.89270 0.85001 1.05284 1.21878 0.92091 0.83107 0.74901 1.90817 1.71234 1.29443 1.50481 1.43593 1.13067 1.05382 1.67483 0.88959 0.90184 0.87178 0.88924 0.93228 0.90376 0.88579 0.97491 0.92905 0.94292 0.80025 0.79997 0.85338 0.86034 0.81696 0.72978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 8.58 127.77 1.10 1.73 16 2 N -0.59 -15.21 2.78 -850.49 -2.37 -17.57 16 3 C 0.14 4.70 5.31 86.38 0.46 5.16 16 4 C 0.13 5.37 4.54 45.09 0.20 5.57 16 5 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 6 C -0.12 -4.24 7.18 31.25 0.22 -4.02 16 7 C 0.14 6.95 7.64 86.43 0.66 7.61 16 8 N -0.63 -32.68 3.58 -690.89 -2.48 -35.16 16 9 C -0.23 -12.94 10.51 84.04 0.88 -12.06 16 10 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 11 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 12 N -0.95 -57.62 11.32 21.65 0.25 -57.38 16 13 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 17 C 0.55 15.88 7.41 86.71 0.64 16.52 16 18 O -0.59 -23.07 16.37 -3.99 -0.07 -23.13 16 19 C -0.13 -2.59 5.48 -20.07 -0.11 -2.70 16 20 C -0.08 -0.82 7.43 22.53 0.17 -0.66 16 21 C -0.11 -0.80 9.92 22.31 0.22 -0.58 16 22 C 0.12 1.40 6.54 38.37 0.25 1.65 16 23 C 0.06 1.04 6.44 22.56 0.15 1.19 16 24 C -0.07 -1.42 9.54 22.58 0.22 -1.20 16 25 O -0.31 -5.42 10.44 -93.92 -0.98 -6.40 16 26 C 0.05 0.53 7.18 71.25 0.51 1.04 16 27 C 0.49 7.17 7.94 87.63 0.70 7.87 16 28 O -0.54 -11.40 17.95 -3.03 -0.05 -11.46 16 29 N -0.65 -6.89 5.45 -302.67 -1.65 -8.54 16 30 H 0.09 0.75 7.39 -2.39 -0.02 0.73 16 31 H 0.08 1.15 6.42 -2.38 -0.02 1.13 16 32 H 0.11 1.02 4.76 -2.39 -0.01 1.01 16 33 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 34 H 0.05 2.00 7.53 -2.39 -0.02 1.98 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.10 2.97 6.89 -2.39 -0.02 2.95 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.05 2.79 6.98 -2.39 -0.02 2.77 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.18 1.01 4.71 -2.91 -0.01 0.99 16 41 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 42 H 0.13 3.22 7.94 -2.91 -0.02 3.20 16 43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.43 2.61 8.88 -92.71 -0.82 1.78 16 Total: -1.00 -83.42 370.33 1.65 -81.77 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.23 Total: 5.70 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.73 Total: 23.78 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -6.25 Total: -118.66 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.10 Total: -40.99 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -83.42 1.65 -81.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.313 kcal (2) G-P(sol) polarization free energy of solvation -83.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds