Wall clock time and date at job start Wed Apr 1 2020 03:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99946 * 2 1 4 4 C 1.53004 * 109.46851 * 261.44421 * 3 2 1 5 5 H 1.09005 * 112.96477 * 306.21762 * 4 3 2 6 6 C 1.53947 * 113.76947 * 174.54706 * 4 3 2 7 7 C 1.53948 * 86.28912 * 222.08878 * 6 4 3 8 8 N 1.47577 * 113.76937 * 78.04958 * 4 3 2 9 9 C 1.36934 * 134.49411 * 318.93621 * 8 4 3 10 10 H 1.07994 * 120.00185 * 327.90653 * 9 8 4 11 11 C 1.38815 * 119.99751 * 147.90590 * 9 8 4 12 12 N 1.31617 * 120.00015 * 173.65420 * 11 9 8 13 13 Si 1.86796 * 120.00191 * 353.65375 * 11 9 8 14 14 H 1.48498 * 109.47295 * 87.63593 * 13 11 9 15 15 H 1.48499 * 109.47481 * 207.63964 * 13 11 9 16 16 H 1.48509 * 109.46961 * 327.63470 * 13 11 9 17 17 C 1.34772 * 119.99995 * 179.97438 * 2 1 3 18 18 O 1.21585 * 119.99836 * 176.17163 * 17 2 1 19 19 C 1.47605 * 119.99949 * 356.44851 * 17 2 1 20 20 C 1.39722 * 120.03040 * 336.26786 * 19 17 2 21 21 C 1.37819 * 120.05764 * 179.70551 * 20 19 17 22 22 C 1.38813 * 120.01650 * 0.52767 * 21 20 19 23 23 C 1.39671 * 120.20337 * 359.79261 * 22 21 20 24 24 C 1.37969 * 120.01478 * 359.92878 * 23 22 21 25 25 O 1.36039 * 119.44134 * 179.91522 * 23 22 21 26 26 C 1.43002 * 116.66980 * 327.22670 * 25 23 22 27 27 C 1.50757 * 109.59518 * 46.34362 * 26 25 23 28 28 O 1.21286 * 120.11219 * 148.66654 * 27 26 25 29 29 N 1.35047 * 119.76939 * 328.68729 * 27 26 25 30 30 H 1.09001 * 109.47215 * 275.67373 * 1 2 3 31 31 H 1.09005 * 109.47233 * 35.67079 * 1 2 3 32 32 H 1.08998 * 109.46925 * 155.66599 * 1 2 3 33 33 H 1.09001 * 109.47657 * 21.43926 * 3 2 1 34 34 H 1.09003 * 109.47516 * 141.44238 * 3 2 1 35 35 H 1.09000 * 113.73880 * 336.43250 * 6 4 3 36 36 H 1.09002 * 113.74575 * 107.63700 * 6 4 3 37 37 H 1.08995 * 113.76981 * 137.90477 * 7 6 4 38 38 H 1.08995 * 113.76598 * 269.19402 * 7 6 4 39 39 H 0.96993 * 120.00408 * 180.02562 * 12 11 9 40 40 H 1.08007 * 119.97285 * 359.95161 * 20 19 17 41 41 H 1.07999 * 119.99038 * 180.26835 * 21 20 19 42 42 H 1.08008 * 120.11791 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.45205 * 166.38407 * 26 25 23 44 44 H 1.09002 * 109.45385 * 286.33593 * 26 25 23 45 45 H 0.97004 * 120.45729 * 181.60870 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6383 1.6030 -1.4265 5 1 3.2002 0.7967 -1.8980 6 6 3.3034 2.9848 -1.5627 7 6 2.4825 3.1414 -2.8557 8 7 1.5583 2.1510 -2.2698 9 6 0.2316 1.8582 -2.4404 10 1 -0.1156 0.8416 -2.3296 11 6 -0.6671 2.8680 -2.7558 12 7 -1.9169 2.5710 -3.0424 13 14 -0.1027 4.6486 -2.7735 14 1 0.4388 4.9830 -4.1152 15 1 -1.2539 5.5359 -2.4691 16 1 0.9557 4.8426 -1.7500 17 6 2.1389 -1.1672 0.0005 18 8 3.3527 -1.1683 -0.0698 19 6 1.4030 -2.4442 0.0803 20 6 0.1224 -2.4796 0.6380 21 6 -0.5677 -3.6706 0.7072 22 6 0.0135 -4.8385 0.2327 23 6 1.2959 -4.8109 -0.3199 24 6 1.9888 -3.6203 -0.3968 25 8 1.8513 -5.9650 -0.7786 26 6 1.5000 -7.1659 -0.0863 27 6 0.0089 -7.2053 0.1329 28 8 -0.5745 -8.2683 0.1582 29 7 -0.6748 -6.0529 0.3006 30 1 -0.3634 0.1016 1.0226 31 1 -0.3634 0.8349 -0.5993 32 1 -0.3633 -0.9364 -0.4234 33 1 1.5508 2.0617 0.3756 34 1 3.0751 1.1816 0.6405 35 1 3.0226 3.6862 -0.7770 36 1 4.3800 2.9394 -1.7271 37 1 2.0441 4.1314 -2.9804 38 1 2.9984 2.7890 -3.7488 39 1 -2.5448 3.2765 -3.2631 40 1 -0.3288 -1.5722 1.0116 41 1 -1.5592 -3.6960 1.1346 42 1 2.9805 -3.5970 -0.8242 43 1 1.8025 -8.0287 -0.6797 44 1 2.0088 -7.1916 0.8773 45 1 -1.6306 -6.0678 0.4655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085642358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:36 Heat of formation + Delta-G solvation = 23.469585 kcal Electronic energy + Delta-G solvation = -30458.589757 eV Core-core repulsion = 26252.239079 eV Total energy + Delta-G solvation = -4206.350678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.77669 -40.13666 -38.93490 -38.18073 -37.40543 -35.46590 -35.08469 -32.43995 -31.12032 -30.56505 -29.03472 -28.35157 -27.55435 -26.47982 -24.18770 -23.74301 -23.21941 -22.45000 -20.53060 -19.93560 -19.13235 -18.52549 -18.19770 -17.54937 -17.20765 -16.70204 -16.06146 -15.74659 -15.59586 -15.49010 -15.05326 -14.83751 -14.78845 -14.24830 -14.17404 -14.04337 -13.48863 -13.35539 -13.16565 -13.02542 -12.80938 -12.52288 -12.45279 -11.89318 -11.73318 -11.54637 -11.34363 -11.16030 -11.07909 -10.89315 -10.74927 -10.47436 -10.42135 -10.33057 -9.76657 -9.51845 -9.45511 -8.96244 -8.66979 -8.27795 -8.13984 -6.93644 -6.03819 -3.46634 0.49545 1.02400 1.82720 2.36217 2.79160 3.00217 3.28985 3.34792 3.39465 3.42949 3.60102 3.72625 4.29282 4.46279 4.53394 4.58125 4.69600 4.74176 4.80774 4.99914 5.09263 5.20318 5.36963 5.46569 5.59178 5.65319 5.70715 5.74953 5.80753 5.89956 5.96798 6.07438 6.10570 6.16205 6.20015 6.23110 6.37976 6.42644 6.43182 6.46501 6.64693 6.88288 6.95224 7.09941 7.36124 7.44962 7.75738 8.25507 8.43417 8.60847 9.55780 10.35207 11.11435 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002787 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.412098 B =10042.631645 C =10885.791973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.584 5.584 3 C 0.123 3.877 4 C 0.133 3.867 5 H 0.060 0.940 6 C -0.147 4.147 7 C 0.094 3.906 8 N -0.619 5.619 9 C -0.234 4.234 10 H 0.091 0.909 11 C 0.029 3.971 12 N -0.913 5.913 13 Si 0.897 3.103 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.266 1.266 17 C 0.555 3.445 18 O -0.545 6.545 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.133 4.133 22 C 0.111 3.889 23 C 0.063 3.937 24 C -0.048 4.048 25 O -0.299 6.299 26 C 0.050 3.950 27 C 0.491 3.509 28 O -0.513 6.513 29 N -0.657 5.657 30 H 0.050 0.950 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.164 0.836 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.100 0.900 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -12.102 10.428 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.314 5.314 3 C 0.000 4.000 4 C 0.026 3.974 5 H 0.077 0.923 6 C -0.186 4.186 7 C -0.030 4.030 8 N -0.347 5.347 9 C -0.361 4.361 10 H 0.108 0.892 11 C -0.171 4.171 12 N -0.556 5.556 13 Si 0.728 3.272 14 H -0.216 1.216 15 H -0.232 1.232 16 H -0.191 1.191 17 C 0.343 3.657 18 O -0.424 6.424 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.153 4.153 22 C 0.015 3.985 23 C 0.017 3.983 24 C -0.068 4.068 25 O -0.213 6.213 26 C -0.028 4.028 27 C 0.279 3.721 28 O -0.388 6.388 29 N -0.303 5.303 30 H 0.068 0.932 31 H 0.143 0.857 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.181 0.819 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.118 0.882 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.033 -12.755 10.141 17.054 hybrid contribution -0.632 0.895 -0.141 1.105 sum 4.400 -11.860 10.000 16.125 Atomic orbital electron populations 1.23033 0.79031 1.07026 1.01364 1.47531 1.07562 1.05442 1.70854 1.21816 0.96194 0.84090 0.97902 1.22706 0.89318 0.94571 0.90829 0.92263 1.23574 0.97984 0.97918 0.99092 1.22900 0.90943 0.94580 0.94571 1.46235 1.04418 1.40516 1.43545 1.18599 0.79020 0.94256 1.44182 0.89198 1.25200 0.94624 0.98071 0.99186 1.69725 1.03361 1.32877 1.49673 0.86665 0.76623 0.85558 0.78321 1.21560 1.23199 1.19121 1.18057 0.86972 0.83407 0.77283 1.90753 1.13418 1.87303 1.50965 1.19776 0.95335 0.93694 1.03104 1.22185 0.93018 0.98839 0.96741 1.20614 1.01419 0.90427 1.02861 1.18209 0.92076 0.86735 1.01518 1.18337 0.90782 0.87379 1.01798 1.20516 0.99902 0.88495 0.97854 1.86308 1.68171 1.12637 1.54191 1.23198 0.90124 0.88437 1.01048 1.21607 0.91515 0.83431 0.75588 1.90816 1.70610 1.28835 1.48510 1.43660 1.12362 1.04342 1.69982 0.93183 0.85725 0.90194 0.89636 0.90826 0.90314 0.92191 0.93707 0.94193 0.92584 0.81912 0.84247 0.83222 0.83614 0.88174 0.74311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 7.84 59.85 0.47 1.03 16 2 N -0.58 -9.59 2.90 -182.78 -0.53 -10.12 16 3 C 0.12 2.08 5.20 -4.04 -0.02 2.06 16 4 C 0.13 2.53 4.41 -66.86 -0.30 2.24 16 5 H 0.06 1.22 8.01 -51.93 -0.42 0.81 16 6 C -0.15 -2.53 7.86 -25.80 -0.20 -2.73 16 7 C 0.09 1.94 7.44 -2.97 -0.02 1.92 16 8 N -0.62 -14.01 3.15 -170.73 -0.54 -14.55 16 9 C -0.23 -5.98 8.81 -15.06 -0.13 -6.12 16 10 H 0.09 2.42 6.33 -52.49 -0.33 2.09 16 11 C 0.03 0.78 5.50 -17.43 -0.10 0.68 16 12 N -0.91 -26.06 13.97 55.49 0.78 -25.28 16 13 Si 0.90 21.54 24.96 -169.99 -4.24 17.30 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.27 -6.06 6.39 56.52 0.36 -5.70 16 17 C 0.55 9.21 7.42 -12.44 -0.09 9.12 16 18 O -0.55 -10.40 16.16 5.29 0.09 -10.32 16 19 C -0.12 -1.58 5.55 -104.94 -0.58 -2.17 16 20 C -0.09 -0.99 7.51 -39.18 -0.29 -1.29 16 21 C -0.13 -1.25 9.92 -39.52 -0.39 -1.65 16 22 C 0.11 1.15 6.55 -83.50 -0.55 0.61 16 23 C 0.06 0.75 6.43 -39.15 -0.25 0.49 16 24 C -0.05 -0.63 9.53 -39.10 -0.37 -1.00 16 25 O -0.30 -3.28 10.45 -19.86 -0.21 -3.49 16 26 C 0.05 0.40 7.17 36.03 0.26 0.66 16 27 C 0.49 5.03 7.94 -10.84 -0.09 4.95 16 28 O -0.51 -6.67 17.95 5.55 0.10 -6.57 16 29 N -0.66 -6.10 5.45 -9.65 -0.05 -6.15 16 30 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 31 H 0.12 2.40 4.67 -51.93 -0.24 2.16 16 32 H 0.08 1.13 4.91 -51.93 -0.26 0.88 16 33 H 0.09 1.44 8.01 -51.93 -0.42 1.02 16 34 H 0.07 1.15 7.75 -51.93 -0.40 0.75 16 35 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.97 3.68 -51.93 -0.19 0.78 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.16 1.64 4.26 -52.48 -0.22 1.41 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.15 2.00 7.82 -52.48 -0.41 1.59 16 43 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.42 3.09 8.88 -40.82 -0.36 2.73 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -32.90 359.23 -7.19 -40.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.34 Total: 4.86 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.66 Total: 8.81 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.35 Total: -56.11 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.02 Total: -20.38 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.24 Total: 17.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.90 -7.19 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.567 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds