Wall clock time and date at job start Wed Apr 1 2020 03:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99946 * 2 1 4 4 C 1.53004 * 109.46851 * 261.44421 * 3 2 1 5 5 H 1.09005 * 112.96477 * 306.21762 * 4 3 2 6 6 C 1.53947 * 113.76947 * 174.54706 * 4 3 2 7 7 C 1.53948 * 86.28912 * 222.08878 * 6 4 3 8 8 N 1.47577 * 113.76937 * 78.04958 * 4 3 2 9 9 C 1.36934 * 134.49411 * 318.93621 * 8 4 3 10 10 H 1.07994 * 120.00185 * 327.90653 * 9 8 4 11 11 C 1.38815 * 119.99751 * 147.90590 * 9 8 4 12 12 N 1.31617 * 120.00015 * 173.65420 * 11 9 8 13 13 Si 1.86796 * 120.00191 * 353.65375 * 11 9 8 14 14 H 1.48498 * 109.47295 * 87.63593 * 13 11 9 15 15 H 1.48499 * 109.47481 * 207.63964 * 13 11 9 16 16 H 1.48509 * 109.46961 * 327.63470 * 13 11 9 17 17 C 1.34772 * 119.99995 * 179.97438 * 2 1 3 18 18 O 1.21585 * 119.99836 * 176.17163 * 17 2 1 19 19 C 1.47605 * 119.99949 * 356.44851 * 17 2 1 20 20 C 1.39722 * 120.03040 * 336.26786 * 19 17 2 21 21 C 1.37819 * 120.05764 * 179.70551 * 20 19 17 22 22 C 1.38813 * 120.01650 * 0.52767 * 21 20 19 23 23 C 1.39671 * 120.20337 * 359.79261 * 22 21 20 24 24 C 1.37969 * 120.01478 * 359.92878 * 23 22 21 25 25 O 1.36039 * 119.44134 * 179.91522 * 23 22 21 26 26 C 1.43002 * 116.66980 * 327.22670 * 25 23 22 27 27 C 1.50757 * 109.59518 * 46.34362 * 26 25 23 28 28 O 1.21286 * 120.11219 * 148.66654 * 27 26 25 29 29 N 1.35047 * 119.76939 * 328.68729 * 27 26 25 30 30 H 1.09001 * 109.47215 * 275.67373 * 1 2 3 31 31 H 1.09005 * 109.47233 * 35.67079 * 1 2 3 32 32 H 1.08998 * 109.46925 * 155.66599 * 1 2 3 33 33 H 1.09001 * 109.47657 * 21.43926 * 3 2 1 34 34 H 1.09003 * 109.47516 * 141.44238 * 3 2 1 35 35 H 1.09000 * 113.73880 * 336.43250 * 6 4 3 36 36 H 1.09002 * 113.74575 * 107.63700 * 6 4 3 37 37 H 1.08995 * 113.76981 * 137.90477 * 7 6 4 38 38 H 1.08995 * 113.76598 * 269.19402 * 7 6 4 39 39 H 0.96993 * 120.00408 * 180.02562 * 12 11 9 40 40 H 1.08007 * 119.97285 * 359.95161 * 20 19 17 41 41 H 1.07999 * 119.99038 * 180.26835 * 21 20 19 42 42 H 1.08008 * 120.11791 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.45205 * 166.38407 * 26 25 23 44 44 H 1.09002 * 109.45385 * 286.33593 * 26 25 23 45 45 H 0.97004 * 120.45729 * 181.60870 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6383 1.6030 -1.4265 5 1 3.2002 0.7967 -1.8980 6 6 3.3034 2.9848 -1.5627 7 6 2.4825 3.1414 -2.8557 8 7 1.5583 2.1510 -2.2698 9 6 0.2316 1.8582 -2.4404 10 1 -0.1156 0.8416 -2.3296 11 6 -0.6671 2.8680 -2.7558 12 7 -1.9169 2.5710 -3.0424 13 14 -0.1027 4.6486 -2.7735 14 1 0.4388 4.9830 -4.1152 15 1 -1.2539 5.5359 -2.4691 16 1 0.9557 4.8426 -1.7500 17 6 2.1389 -1.1672 0.0005 18 8 3.3527 -1.1683 -0.0698 19 6 1.4030 -2.4442 0.0803 20 6 0.1224 -2.4796 0.6380 21 6 -0.5677 -3.6706 0.7072 22 6 0.0135 -4.8385 0.2327 23 6 1.2959 -4.8109 -0.3199 24 6 1.9888 -3.6203 -0.3968 25 8 1.8513 -5.9650 -0.7786 26 6 1.5000 -7.1659 -0.0863 27 6 0.0089 -7.2053 0.1329 28 8 -0.5745 -8.2683 0.1582 29 7 -0.6748 -6.0529 0.3006 30 1 -0.3634 0.1016 1.0226 31 1 -0.3634 0.8349 -0.5993 32 1 -0.3633 -0.9364 -0.4234 33 1 1.5508 2.0617 0.3756 34 1 3.0751 1.1816 0.6405 35 1 3.0226 3.6862 -0.7770 36 1 4.3800 2.9394 -1.7271 37 1 2.0441 4.1314 -2.9804 38 1 2.9984 2.7890 -3.7488 39 1 -2.5448 3.2765 -3.2631 40 1 -0.3288 -1.5722 1.0116 41 1 -1.5592 -3.6960 1.1346 42 1 2.9805 -3.5970 -0.8242 43 1 1.8025 -8.0287 -0.6797 44 1 2.0088 -7.1916 0.8773 45 1 -1.6306 -6.0678 0.4655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:35 Heat of formation + Delta-G solvation = -0.428661 kcal Electronic energy + Delta-G solvation = -30459.626063 eV Core-core repulsion = 26252.239079 eV Total energy + Delta-G solvation = -4207.386984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.61996 -41.32846 -40.02324 -39.53056 -38.36973 -36.55948 -36.19978 -34.41079 -32.06598 -31.56198 -30.52751 -29.64248 -28.60873 -27.72890 -25.38182 -25.03970 -24.62691 -23.66448 -21.47864 -21.02553 -20.60715 -19.57688 -19.05328 -19.01048 -18.45621 -17.66352 -17.44703 -17.05990 -16.71868 -16.62805 -16.35372 -15.94594 -15.72753 -15.35020 -15.34475 -15.09144 -14.99578 -14.74675 -14.36294 -14.25693 -14.08635 -13.94963 -13.68453 -13.15367 -12.90713 -12.84105 -12.74598 -12.58115 -12.55543 -12.14879 -12.04951 -12.00138 -11.72897 -11.49124 -11.28948 -11.22881 -10.83271 -10.63602 -9.86157 -9.54329 -9.10021 -8.77880 -8.07887 -5.47406 -0.44396 0.14472 0.98721 1.37263 1.43510 1.53505 1.59148 1.76562 2.00588 2.28375 2.49370 2.67844 2.84558 3.02769 3.23496 3.47042 3.50634 3.85146 3.94044 3.98628 4.07121 4.12317 4.22397 4.28980 4.40460 4.42903 4.52524 4.59525 4.62833 4.69180 4.72595 4.83883 4.85832 4.94047 4.97718 5.02676 5.19294 5.29161 5.30018 5.38754 5.48451 5.62964 5.63597 5.73228 6.12058 6.25502 6.48380 6.60256 6.62963 7.15808 7.54475 8.44001 9.10625 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002787 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.412098 B =10042.631645 C =10885.791973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.589 5.589 3 C 0.126 3.874 4 C 0.132 3.868 5 H 0.042 0.958 6 C -0.124 4.124 7 C 0.082 3.918 8 N -0.640 5.640 9 C -0.209 4.209 10 H 0.069 0.931 11 C -0.025 4.025 12 N -0.957 5.957 13 Si 0.946 3.054 14 H -0.295 1.295 15 H -0.313 1.313 16 H -0.244 1.244 17 C 0.551 3.449 18 O -0.578 6.578 19 C -0.135 4.135 20 C -0.085 4.085 21 C -0.119 4.119 22 C 0.117 3.883 23 C 0.059 3.941 24 C -0.061 4.061 25 O -0.311 6.311 26 C 0.048 3.952 27 C 0.491 3.509 28 O -0.543 6.543 29 N -0.650 5.650 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.260 0.740 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.137 0.863 43 H 0.168 0.832 44 H 0.125 0.875 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -12.413 12.116 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.318 5.318 3 C 0.002 3.998 4 C 0.025 3.975 5 H 0.060 0.940 6 C -0.162 4.162 7 C -0.042 4.042 8 N -0.369 5.369 9 C -0.337 4.337 10 H 0.086 0.914 11 C -0.220 4.220 12 N -0.603 5.603 13 Si 0.777 3.223 14 H -0.222 1.222 15 H -0.242 1.242 16 H -0.168 1.168 17 C 0.341 3.659 18 O -0.460 6.460 19 C -0.139 4.139 20 C -0.104 4.104 21 C -0.139 4.139 22 C 0.020 3.980 23 C 0.012 3.988 24 C -0.081 4.081 25 O -0.226 6.226 26 C -0.030 4.030 27 C 0.280 3.720 28 O -0.420 6.420 29 N -0.297 5.297 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.155 0.845 43 H 0.186 0.814 44 H 0.143 0.857 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 5.650 -13.060 11.850 18.518 hybrid contribution -0.765 0.819 -0.691 1.316 sum 4.886 -12.242 11.159 17.270 Atomic orbital electron populations 1.22987 0.78320 1.05604 1.02867 1.47623 1.08030 1.05398 1.70725 1.21748 0.96916 0.84552 0.96573 1.22745 0.88028 0.95309 0.91387 0.94007 1.23441 0.99360 0.96211 0.97192 1.23103 0.91074 0.93484 0.96558 1.46527 1.04117 1.41123 1.45120 1.18543 0.80553 0.93244 1.41365 0.91402 1.25713 0.94748 1.01213 1.00360 1.69841 1.04520 1.33442 1.52512 0.85872 0.76289 0.81727 0.78405 1.22248 1.24224 1.16789 1.18481 0.86778 0.84231 0.76370 1.90719 1.14843 1.87839 1.52563 1.19641 0.96563 0.92450 1.05288 1.22283 0.91929 1.00048 0.96124 1.20953 1.02451 0.89147 1.01369 1.18275 0.91572 0.87408 1.00750 1.18339 0.91328 0.87313 1.01788 1.20426 0.99755 0.89181 0.98771 1.86294 1.68370 1.13089 1.54826 1.23503 0.88901 0.87856 1.02697 1.21957 0.92306 0.83052 0.74717 1.90810 1.71350 1.29802 1.50011 1.43629 1.12905 1.03792 1.69329 0.89525 0.89770 0.89387 0.89379 0.89349 0.88958 0.88974 0.94392 0.93644 0.93115 0.80703 0.80659 0.84536 0.81429 0.85695 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 7.84 127.77 1.00 2.28 16 2 N -0.59 -18.92 2.90 -850.46 -2.46 -21.39 16 3 C 0.13 4.08 5.20 86.38 0.45 4.53 16 4 C 0.13 4.87 4.41 45.10 0.20 5.07 16 5 H 0.04 1.72 8.01 -2.38 -0.02 1.70 16 6 C -0.12 -3.89 7.86 31.26 0.25 -3.64 16 7 C 0.08 3.22 7.44 86.48 0.64 3.86 16 8 N -0.64 -28.58 3.15 -694.08 -2.19 -30.77 16 9 C -0.21 -10.82 8.81 84.03 0.74 -10.08 16 10 H 0.07 3.77 6.33 -2.91 -0.02 3.75 16 11 C -0.03 -1.38 5.50 84.86 0.47 -0.91 16 12 N -0.96 -56.03 13.97 21.65 0.30 -55.73 16 13 Si 0.95 44.43 24.96 68.60 1.71 46.14 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 15 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 16 H -0.24 -10.40 6.39 99.48 0.64 -9.77 16 17 C 0.55 18.23 7.42 86.72 0.64 18.88 16 18 O -0.58 -22.26 16.16 -3.98 -0.06 -22.33 16 19 C -0.14 -3.66 5.55 -20.07 -0.11 -3.77 16 20 C -0.09 -1.73 7.51 22.53 0.17 -1.56 16 21 C -0.12 -1.90 9.92 22.31 0.22 -1.68 16 22 C 0.12 2.17 6.55 38.36 0.25 2.42 16 23 C 0.06 1.32 6.43 22.55 0.15 1.47 16 24 C -0.06 -1.61 9.53 22.58 0.22 -1.40 16 25 O -0.31 -6.47 10.45 -93.99 -0.98 -7.45 16 26 C 0.05 0.67 7.17 71.25 0.51 1.18 16 27 C 0.49 9.15 7.94 87.63 0.70 9.84 16 28 O -0.54 -13.35 17.95 -3.05 -0.05 -13.40 16 29 N -0.65 -10.57 5.45 -302.67 -1.65 -12.22 16 30 H 0.09 1.88 7.22 -2.39 -0.02 1.87 16 31 H 0.08 3.27 4.67 -2.38 -0.01 3.26 16 32 H 0.09 2.42 4.91 -2.39 -0.01 2.40 16 33 H 0.09 2.81 8.01 -2.39 -0.02 2.79 16 34 H 0.09 2.61 7.75 -2.39 -0.02 2.60 16 35 H 0.09 2.70 8.10 -2.39 -0.02 2.68 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.04 1.56 3.68 -2.39 -0.01 1.55 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.18 3.05 4.26 -2.91 -0.01 3.04 16 41 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 42 H 0.14 3.84 7.82 -2.91 -0.02 3.82 16 43 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.43 5.22 8.88 -92.71 -0.82 4.40 16 Total: -1.00 -73.19 359.23 1.28 -71.91 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.18 Total: 18.74 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 6.49 Total: 26.49 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.00 Total: -120.11 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -1.10 Total: -43.18 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.71 Total: 46.14 kcal Total: -73.19 1.28 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.486 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds