Wall clock time and date at job start Wed Apr 1 2020 04:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.37097 * 119.99748 * 2 1 4 4 H 1.08005 * 119.99681 * 202.40757 * 3 2 1 5 5 C 1.38945 * 120.00543 * 22.40120 * 3 2 1 6 6 N 1.31411 * 119.99932 * 11.59669 * 5 3 2 7 7 Si 1.86801 * 120.00053 * 191.59919 * 5 3 2 8 8 H 1.48493 * 109.47373 * 59.99976 * 7 5 3 9 9 H 1.48508 * 109.46917 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47228 * 299.99614 * 7 5 3 11 11 C 1.34772 * 119.99647 * 179.97438 * 2 1 3 12 12 O 1.21300 * 119.99822 * 180.02562 * 11 2 1 13 13 C 1.50701 * 120.00339 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.46877 * 179.97438 * 13 11 2 15 15 C 1.53004 * 109.46915 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47027 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00181 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.47066 * 121.05965 * 359.97438 * 18 16 15 20 20 C 1.50734 * 109.01447 * 221.98450 * 19 18 16 21 21 O 1.21303 * 119.59955 * 150.95472 * 20 19 18 22 22 N 1.34644 * 120.79795 * 330.92997 * 20 19 18 23 23 C 1.39907 * 120.72790 * 2.37724 * 22 20 19 24 24 C 1.38588 * 120.77198 * 193.93037 * 23 22 20 25 25 C 1.38258 * 119.85185 * 180.46706 * 24 23 22 26 26 C 1.38307 * 120.36755 * 359.97438 * 25 24 23 27 27 C 1.38350 * 120.18157 * 359.92694 * 26 25 24 28 28 C 1.38326 * 119.73373 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.46977 * 272.16424 * 1 2 3 30 30 H 1.08996 * 109.46686 * 32.16360 * 1 2 3 31 31 H 1.08995 * 109.46962 * 152.16341 * 1 2 3 32 32 H 0.97006 * 120.00024 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.46827 * 60.00107 * 13 11 2 34 34 H 1.09000 * 109.47137 * 299.99854 * 13 11 2 35 35 H 1.09010 * 109.47206 * 60.00404 * 14 13 11 36 36 H 1.09000 * 109.47545 * 300.00128 * 14 13 11 37 37 H 1.09000 * 109.46535 * 60.00222 * 15 14 13 38 38 H 1.09000 * 109.47356 * 300.00535 * 15 14 13 39 39 H 1.08997 * 109.54817 * 341.84879 * 19 18 16 40 40 H 1.09005 * 109.54468 * 102.03645 * 19 18 16 41 41 H 0.97001 * 119.63470 * 182.39762 * 22 20 19 42 42 H 1.08004 * 120.06959 * 0.47864 * 24 23 22 43 43 H 1.07998 * 119.81973 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.91146 * 179.65061 * 26 25 24 45 45 H 1.08006 * 120.12964 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3566 5 6 1.5345 2.3453 0.4585 6 7 0.3896 2.2708 1.0993 7 14 2.3337 4.0078 0.1640 8 1 2.4816 4.2343 -1.2960 9 1 1.4831 5.0762 0.7476 10 1 3.6719 4.0347 0.8073 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 6 1.6147 -4.9603 0.0012 16 6 2.5940 -6.1057 0.0005 17 8 3.7865 -5.8840 0.0001 18 7 2.1447 -7.3763 0.0015 19 6 0.7041 -7.6718 0.0037 20 6 0.4372 -8.8080 0.9576 21 8 -0.6362 -8.8804 1.5178 22 7 1.3758 -9.7437 1.1950 23 6 2.6389 -9.6564 0.5997 24 6 3.5011 -10.7414 0.6036 25 6 4.7488 -10.6311 0.0182 26 6 5.1416 -9.4437 -0.5722 27 6 4.2867 -8.3559 -0.5827 28 6 3.0363 -8.4605 -0.0005 29 1 -0.3633 0.0388 1.0270 30 1 -0.3632 0.8699 -0.5471 31 1 -0.3633 -0.9087 -0.4799 32 1 -0.0406 3.0793 1.4192 33 1 0.7591 -2.5302 -0.8897 34 1 0.7584 -2.5299 0.8903 35 1 3.0063 -3.5775 0.8906 36 1 3.0064 -3.5775 -0.8894 37 1 0.9878 -5.0182 -0.8886 38 1 0.9882 -5.0177 0.8913 39 1 0.1512 -6.7889 0.3243 40 1 0.3884 -7.9551 -1.0005 41 1 1.1740 -10.4867 1.7850 42 1 3.1990 -11.6711 1.0628 43 1 5.4201 -11.4771 0.0212 44 1 6.1201 -9.3639 -1.0224 45 1 4.5945 -7.4289 -1.0436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180098654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:56 Heat of formation + Delta-G solvation = -60.740171 kcal Electronic energy + Delta-G solvation = -29300.900381 eV Core-core repulsion = 25090.898093 eV Total energy + Delta-G solvation = -4210.002287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.91026 -39.83187 -38.97017 -38.40184 -36.18718 -35.28813 -34.85020 -33.86027 -31.59376 -31.00507 -30.07185 -28.78407 -27.72231 -26.16018 -24.68566 -23.83471 -23.30296 -22.06689 -20.72165 -19.44982 -18.78160 -18.72228 -18.04055 -17.43607 -16.87849 -16.80936 -16.09872 -15.90146 -15.61700 -15.46084 -14.94653 -14.81316 -14.46332 -14.34849 -14.22317 -14.05610 -13.71662 -13.59214 -13.40925 -13.01807 -12.38490 -12.26812 -12.10769 -11.94769 -11.86337 -11.50044 -11.26435 -11.21637 -11.13261 -11.07495 -11.00524 -10.77208 -10.44242 -10.41312 -10.36581 -10.15850 -9.93862 -8.98417 -8.89438 -8.32991 -8.16857 -7.63668 -6.27222 -3.83522 0.69253 0.91452 1.85444 2.20796 2.32011 2.51730 3.21547 3.26517 3.30895 3.38302 3.64926 3.95515 4.04622 4.18244 4.32692 4.43329 4.62903 4.70851 4.76288 4.86131 4.97971 5.01986 5.05708 5.16876 5.19645 5.37564 5.42469 5.60787 5.73145 5.76811 5.78407 5.96315 6.03329 6.12402 6.12854 6.19066 6.39340 6.42266 6.51642 6.66467 6.71325 6.76790 6.91046 7.25289 7.37767 7.60334 7.73889 8.17906 8.53635 9.24136 9.48253 10.04567 10.76561 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002026 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.652104 B =13817.893898 C =14929.998403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.886 5.886 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.445 3.555 12 O -0.589 6.589 13 C -0.130 4.130 14 C -0.084 4.084 15 C -0.141 4.141 16 C 0.520 3.480 17 O -0.498 6.498 18 N -0.567 5.567 19 C 0.092 3.908 20 C 0.513 3.487 21 O -0.515 6.515 22 N -0.656 5.656 23 C 0.124 3.876 24 C -0.135 4.135 25 C -0.105 4.105 26 C -0.118 4.118 27 C -0.091 4.091 28 C 0.116 3.884 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.414 0.586 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -27.105 -3.566 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.526 5.526 7 Si 0.754 3.246 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.233 3.767 12 O -0.474 6.474 13 C -0.170 4.170 14 C -0.122 4.122 15 C -0.181 4.181 16 C 0.311 3.689 17 O -0.371 6.371 18 N -0.296 5.296 19 C -0.034 4.034 20 C 0.299 3.701 21 O -0.388 6.388 22 N -0.301 5.301 23 C 0.026 3.974 24 C -0.156 4.156 25 C -0.124 4.124 26 C -0.138 4.138 27 C -0.112 4.112 28 C 0.021 3.979 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.253 0.747 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.446 -26.559 -3.262 26.762 hybrid contribution -0.121 0.452 0.299 0.555 sum -0.567 -26.107 -2.963 26.281 Atomic orbital electron populations 1.21489 0.81217 0.98695 1.01626 1.43619 1.05499 1.04866 1.63002 1.19611 0.99424 0.83953 1.40282 0.88505 1.25332 0.96559 1.00044 0.95493 1.69990 1.17426 1.29267 1.35901 0.85991 0.79019 0.80933 0.78700 1.19969 1.21004 1.19823 1.20052 0.88104 0.84886 0.83656 1.90532 1.14041 1.87191 1.55599 1.21533 0.98699 0.94146 1.02642 1.21056 0.97120 0.89055 1.05011 1.21885 0.98170 0.93395 1.04645 1.21190 0.90534 0.82372 0.74847 1.90738 1.16810 1.83348 1.46170 1.45864 1.05480 1.05327 1.72974 1.22136 0.81644 0.98755 1.00840 1.20877 0.83579 0.82990 0.82652 1.90851 1.23692 1.75344 1.48945 1.43542 1.11442 1.27789 1.47371 1.17596 0.86468 0.94576 0.98721 1.20579 0.94498 0.96829 1.03668 1.20987 0.95456 0.98157 0.97821 1.21146 0.99971 0.92438 1.00231 1.21201 0.91836 1.00380 0.97761 1.17545 0.92648 0.85934 1.01725 0.92490 0.91422 0.95529 0.92302 0.90512 0.90330 0.90530 0.90516 0.88207 0.88330 0.84729 0.86897 0.74742 0.85035 0.85229 0.85078 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.52 59.85 0.51 3.01 16 2 N -0.45 -11.63 3.02 -122.19 -0.37 -12.00 16 3 C -0.30 -8.63 9.29 -14.94 -0.14 -8.77 16 4 H 0.10 2.88 7.41 -52.48 -0.39 2.49 16 5 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 6 N -0.89 -23.82 10.62 55.50 0.59 -23.23 16 7 Si 0.93 21.07 29.57 -169.99 -5.03 16.05 16 8 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 C 0.44 10.81 7.63 -10.99 -0.08 10.73 16 12 O -0.59 -16.58 15.68 5.54 0.09 -16.50 16 13 C -0.13 -2.22 4.22 -27.88 -0.12 -2.33 16 14 C -0.08 -1.33 3.79 -26.73 -0.10 -1.43 16 15 C -0.14 -1.50 4.14 -27.88 -0.12 -1.62 16 16 C 0.52 6.38 7.58 -10.99 -0.08 6.30 16 17 O -0.50 -7.94 13.48 5.54 0.07 -7.87 16 18 N -0.57 -5.69 3.01 -114.10 -0.34 -6.04 16 19 C 0.09 0.68 6.38 -4.87 -0.03 0.65 16 20 C 0.51 4.73 7.90 -11.03 -0.09 4.64 16 21 O -0.51 -6.26 17.91 5.54 0.10 -6.16 16 22 N -0.66 -5.15 5.37 -9.78 -0.05 -5.20 16 23 C 0.12 1.05 6.58 -83.54 -0.55 0.50 16 24 C -0.13 -0.88 9.93 -39.45 -0.39 -1.28 16 25 C -0.10 -0.68 10.03 -39.55 -0.40 -1.07 16 26 C -0.12 -0.94 10.04 -39.51 -0.40 -1.34 16 27 C -0.09 -0.95 8.83 -39.51 -0.35 -1.30 16 28 C 0.12 1.20 6.10 -83.41 -0.51 0.69 16 29 H 0.06 1.31 7.54 -51.93 -0.39 0.91 16 30 H 0.07 1.58 7.06 -51.93 -0.37 1.21 16 31 H 0.03 0.47 6.36 -51.93 -0.33 0.13 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.08 1.12 7.41 -51.93 -0.38 0.73 16 34 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 35 H 0.08 1.40 8.06 -51.92 -0.42 0.98 16 36 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 37 H 0.10 0.78 8.13 -51.93 -0.42 0.35 16 38 H 0.10 0.87 7.54 -51.93 -0.39 0.48 16 39 H 0.13 0.79 6.24 -51.93 -0.32 0.47 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.41 2.46 8.82 -40.82 -0.36 2.10 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.15 1.79 6.12 -52.48 -0.32 1.47 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -36.50 373.52 -8.01 -44.51 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.76 Total: 2.76 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.93 Total: 8.06 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.18 Total: -46.47 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: 0.26 Total: -30.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.50 -8.01 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180098654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.234 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds