Wall clock time and date at job start Wed Apr 1 2020 04:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.37097 * 119.99748 * 2 1 4 4 H 1.08005 * 119.99681 * 202.40757 * 3 2 1 5 5 C 1.38945 * 120.00543 * 22.40120 * 3 2 1 6 6 N 1.31411 * 119.99932 * 11.59669 * 5 3 2 7 7 Si 1.86801 * 120.00053 * 191.59919 * 5 3 2 8 8 H 1.48493 * 109.47373 * 59.99976 * 7 5 3 9 9 H 1.48508 * 109.46917 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47228 * 299.99614 * 7 5 3 11 11 C 1.34772 * 119.99647 * 179.97438 * 2 1 3 12 12 O 1.21300 * 119.99822 * 180.02562 * 11 2 1 13 13 C 1.50701 * 120.00339 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.46877 * 179.97438 * 13 11 2 15 15 C 1.53004 * 109.46915 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47027 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00181 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.47066 * 121.05965 * 359.97438 * 18 16 15 20 20 C 1.50734 * 109.01447 * 221.98450 * 19 18 16 21 21 O 1.21303 * 119.59955 * 150.95472 * 20 19 18 22 22 N 1.34644 * 120.79795 * 330.92997 * 20 19 18 23 23 C 1.39907 * 120.72790 * 2.37724 * 22 20 19 24 24 C 1.38588 * 120.77198 * 193.93037 * 23 22 20 25 25 C 1.38258 * 119.85185 * 180.46706 * 24 23 22 26 26 C 1.38307 * 120.36755 * 359.97438 * 25 24 23 27 27 C 1.38350 * 120.18157 * 359.92694 * 26 25 24 28 28 C 1.38326 * 119.73373 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.46977 * 272.16424 * 1 2 3 30 30 H 1.08996 * 109.46686 * 32.16360 * 1 2 3 31 31 H 1.08995 * 109.46962 * 152.16341 * 1 2 3 32 32 H 0.97006 * 120.00024 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.46827 * 60.00107 * 13 11 2 34 34 H 1.09000 * 109.47137 * 299.99854 * 13 11 2 35 35 H 1.09010 * 109.47206 * 60.00404 * 14 13 11 36 36 H 1.09000 * 109.47545 * 300.00128 * 14 13 11 37 37 H 1.09000 * 109.46535 * 60.00222 * 15 14 13 38 38 H 1.09000 * 109.47356 * 300.00535 * 15 14 13 39 39 H 1.08997 * 109.54817 * 341.84879 * 19 18 16 40 40 H 1.09005 * 109.54468 * 102.03645 * 19 18 16 41 41 H 0.97001 * 119.63470 * 182.39762 * 22 20 19 42 42 H 1.08004 * 120.06959 * 0.47864 * 24 23 22 43 43 H 1.07998 * 119.81973 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.91146 * 179.65061 * 26 25 24 45 45 H 1.08006 * 120.12964 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3566 5 6 1.5345 2.3453 0.4585 6 7 0.3896 2.2708 1.0993 7 14 2.3337 4.0078 0.1640 8 1 2.4816 4.2343 -1.2960 9 1 1.4831 5.0762 0.7476 10 1 3.6719 4.0347 0.8073 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 6 1.6147 -4.9603 0.0012 16 6 2.5940 -6.1057 0.0005 17 8 3.7865 -5.8840 0.0001 18 7 2.1447 -7.3763 0.0015 19 6 0.7041 -7.6718 0.0037 20 6 0.4372 -8.8080 0.9576 21 8 -0.6362 -8.8804 1.5178 22 7 1.3758 -9.7437 1.1950 23 6 2.6389 -9.6564 0.5997 24 6 3.5011 -10.7414 0.6036 25 6 4.7488 -10.6311 0.0182 26 6 5.1416 -9.4437 -0.5722 27 6 4.2867 -8.3559 -0.5827 28 6 3.0363 -8.4605 -0.0005 29 1 -0.3633 0.0388 1.0270 30 1 -0.3632 0.8699 -0.5471 31 1 -0.3633 -0.9087 -0.4799 32 1 -0.0406 3.0793 1.4192 33 1 0.7591 -2.5302 -0.8897 34 1 0.7584 -2.5299 0.8903 35 1 3.0063 -3.5775 0.8906 36 1 3.0064 -3.5775 -0.8894 37 1 0.9878 -5.0182 -0.8886 38 1 0.9882 -5.0177 0.8913 39 1 0.1512 -6.7889 0.3243 40 1 0.3884 -7.9551 -1.0005 41 1 1.1740 -10.4867 1.7850 42 1 3.1990 -11.6711 1.0628 43 1 5.4201 -11.4771 0.0212 44 1 6.1201 -9.3639 -1.0224 45 1 4.5945 -7.4289 -1.0436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180098654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:55 Heat of formation + Delta-G solvation = -86.303023 kcal Electronic energy + Delta-G solvation = -29302.008869 eV Core-core repulsion = 25090.898093 eV Total energy + Delta-G solvation = -4211.110776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.61768 -40.72653 -40.28866 -39.61257 -36.94869 -36.74054 -35.98895 -35.22368 -33.59438 -31.74381 -30.70461 -29.88409 -28.64228 -27.90879 -26.33292 -24.85440 -23.94525 -23.22895 -21.55362 -20.47974 -20.13818 -19.42755 -18.86668 -18.71913 -18.28769 -17.78330 -17.59251 -17.01949 -16.56491 -16.45490 -16.19413 -15.93081 -15.86740 -15.44724 -15.30862 -14.93871 -14.76638 -14.60337 -14.24411 -14.01824 -13.85962 -13.61671 -13.36344 -13.13428 -12.89534 -12.85414 -12.74768 -12.63459 -12.57643 -12.43072 -12.14714 -12.08997 -11.89733 -11.79182 -11.66828 -11.16143 -11.00392 -10.81652 -10.30139 -9.66001 -9.54039 -8.83982 -8.31341 -5.96523 0.04017 0.28199 1.17508 1.38646 1.39754 1.43003 1.50331 1.56630 1.89341 2.08487 2.28938 2.76683 3.02518 3.08845 3.11962 3.34132 3.68589 3.86377 3.92359 4.07666 4.09346 4.18493 4.23976 4.34070 4.37694 4.42158 4.52417 4.58965 4.65621 4.69280 4.80059 4.90863 4.99802 5.09373 5.20787 5.22264 5.40650 5.45357 5.45768 5.46131 5.50922 5.57868 5.78205 5.93669 6.05388 6.12151 6.52075 6.75124 6.88179 7.20298 7.52730 8.09122 8.69718 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002026 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.652104 B =13817.893898 C =14929.998403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.469 5.469 3 C -0.345 4.345 4 H 0.066 0.934 5 C -0.004 4.004 6 N -0.897 5.897 7 Si 0.987 3.013 8 H -0.267 1.267 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.429 3.571 12 O -0.642 6.642 13 C -0.115 4.115 14 C -0.076 4.076 15 C -0.130 4.130 16 C 0.516 3.484 17 O -0.550 6.550 18 N -0.562 5.562 19 C 0.088 3.912 20 C 0.512 3.488 21 O -0.548 6.548 22 N -0.649 5.649 23 C 0.118 3.882 24 C -0.126 4.126 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.115 4.115 28 C 0.091 3.909 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.273 0.727 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.423 0.577 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.144 0.856 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -29.235 -3.750 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.188 5.188 3 C -0.474 4.474 4 H 0.084 0.916 5 C -0.206 4.206 6 N -0.535 5.535 7 Si 0.811 3.189 8 H -0.192 1.192 9 H -0.193 1.193 10 H -0.205 1.205 11 C 0.220 3.780 12 O -0.530 6.530 13 C -0.155 4.155 14 C -0.115 4.115 15 C -0.169 4.169 16 C 0.308 3.692 17 O -0.426 6.426 18 N -0.290 5.290 19 C -0.036 4.036 20 C 0.299 3.701 21 O -0.424 6.424 22 N -0.295 5.295 23 C 0.021 3.979 24 C -0.147 4.147 25 C -0.117 4.117 26 C -0.143 4.143 27 C -0.136 4.136 28 C -0.004 4.004 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.263 0.737 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.162 0.838 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.497 -28.735 -3.447 29.049 hybrid contribution 0.586 1.007 0.371 1.223 sum -1.912 -27.728 -3.076 27.963 Atomic orbital electron populations 1.21482 0.78966 1.00479 1.01215 1.43940 1.07021 1.04686 1.63133 1.19546 0.99079 0.86209 1.42533 0.91611 1.26054 0.97093 1.02746 0.94673 1.70059 1.17794 1.30359 1.35329 0.85095 0.77892 0.77047 0.78876 1.19217 1.19252 1.20548 1.21382 0.88044 0.86874 0.81724 1.90495 1.16783 1.88276 1.57435 1.21517 0.98526 0.89793 1.05621 1.20856 0.96802 0.91823 1.01972 1.21828 0.97500 0.89510 1.08018 1.21473 0.90084 0.83467 0.74211 1.90732 1.18914 1.84185 1.48759 1.45805 1.06645 1.04623 1.71957 1.22444 0.80044 0.99097 1.02049 1.21148 0.83161 0.83354 0.82392 1.90842 1.24984 1.76286 1.50327 1.43491 1.11014 1.27833 1.47116 1.17701 0.86907 0.94498 0.98816 1.21003 0.93921 0.97308 1.02474 1.21367 0.95816 0.98261 0.96225 1.21387 1.00202 0.92457 1.00265 1.21134 0.92939 1.00335 0.99181 1.17754 0.92937 0.86749 1.02967 0.93611 0.93240 0.90344 0.91750 0.86550 0.87672 0.94258 0.93264 0.84040 0.85414 0.82707 0.84083 0.73720 0.81881 0.82049 0.83821 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.19 8.52 127.77 1.09 6.28 16 2 N -0.47 -24.49 3.02 -658.87 -1.99 -26.47 16 3 C -0.35 -20.22 9.29 84.04 0.78 -19.44 16 4 H 0.07 4.15 7.41 -2.91 -0.02 4.13 16 5 C 0.00 -0.23 5.11 84.93 0.43 0.21 16 6 N -0.90 -48.00 10.62 21.66 0.23 -47.77 16 7 Si 0.99 43.53 29.57 68.60 2.03 45.56 16 8 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 C 0.43 21.22 7.63 87.66 0.67 21.89 16 12 O -0.64 -38.10 15.68 -3.09 -0.05 -38.15 16 13 C -0.11 -3.70 4.22 29.85 0.13 -3.57 16 14 C -0.08 -2.39 3.79 30.60 0.12 -2.28 16 15 C -0.13 -2.45 4.14 29.85 0.12 -2.33 16 16 C 0.52 12.54 7.58 87.66 0.66 13.21 16 17 O -0.55 -18.66 13.48 -3.08 -0.04 -18.70 16 18 N -0.56 -10.67 3.01 -633.29 -1.91 -12.58 16 19 C 0.09 1.06 6.38 85.54 0.55 1.61 16 20 C 0.51 8.41 7.90 87.69 0.69 9.10 16 21 O -0.55 -12.38 17.91 -3.10 -0.06 -12.43 16 22 N -0.65 -8.88 5.37 -303.31 -1.63 -10.51 16 23 C 0.12 1.79 6.58 38.26 0.25 2.04 16 24 C -0.13 -1.30 9.93 22.36 0.22 -1.07 16 25 C -0.10 -1.00 10.03 22.29 0.22 -0.78 16 26 C -0.12 -1.88 10.04 22.31 0.22 -1.66 16 27 C -0.12 -2.48 8.83 22.32 0.20 -2.28 16 28 C 0.09 1.82 6.10 38.12 0.23 2.05 16 29 H 0.05 2.04 7.54 -2.39 -0.02 2.02 16 30 H 0.05 2.26 7.06 -2.39 -0.02 2.25 16 31 H 0.08 2.48 6.36 -2.39 -0.02 2.47 16 32 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 33 H 0.12 2.88 7.41 -2.39 -0.02 2.86 16 34 H 0.11 2.90 8.11 -2.39 -0.02 2.88 16 35 H 0.04 1.51 8.06 -2.38 -0.02 1.49 16 36 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 37 H 0.14 1.54 8.13 -2.39 -0.02 1.52 16 38 H 0.13 1.74 7.54 -2.39 -0.02 1.72 16 39 H 0.16 1.22 6.24 -2.39 -0.01 1.21 16 40 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.42 4.10 8.82 -92.71 -0.82 3.28 16 42 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.12 3.29 6.12 -2.91 -0.02 3.27 16 Total: -1.00 -86.82 373.52 3.40 -83.42 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.23 Total: 14.67 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.59 Total: 22.97 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.30 Total: -97.33 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -0.15 Total: -69.28 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -86.82 3.40 -83.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180098654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.887 kcal (2) G-P(sol) polarization free energy of solvation -86.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds