Wall clock time and date at job start Wed Apr 1 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00002 * 2 1 4 4 S 1.65603 * 119.99929 * 180.02562 * 2 1 3 5 5 O 1.42096 * 104.27634 * 333.92596 * 4 2 1 6 6 O 1.42102 * 104.27691 * 206.06761 * 4 2 1 7 7 C 1.81408 * 104.44943 * 89.99764 * 4 2 1 8 8 C 1.52997 * 109.46995 * 179.97438 * 7 4 2 9 9 C 1.50701 * 109.47052 * 180.02562 * 8 7 4 10 10 O 1.21277 * 119.99792 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.47171 * 120.70602 * 0.02562 * 11 9 8 13 13 C 1.55896 * 107.94597 * 132.41237 * 12 11 9 14 14 H 1.09000 * 112.45394 * 181.84489 * 13 12 11 15 15 C 1.54550 * 108.44191 * 307.12883 * 13 12 11 16 16 C 1.53736 * 104.95341 * 88.29235 * 15 13 12 17 17 C 1.54543 * 104.95444 * 359.97438 * 16 15 13 18 18 H 1.09001 * 112.18661 * 146.28334 * 17 16 15 19 19 C 1.47161 * 120.71093 * 180.02562 * 11 9 8 20 20 N 1.48306 * 106.17911 * 58.77766 * 13 12 11 21 21 C 1.36943 * 128.07355 * 106.44120 * 20 13 12 22 22 H 1.07996 * 119.99617 * 164.67845 * 21 20 13 23 23 C 1.38812 * 119.99858 * 344.68031 * 21 20 13 24 24 N 1.31613 * 120.00190 * 350.72783 * 23 21 20 25 25 Si 1.86803 * 119.99697 * 170.72582 * 23 21 20 26 26 H 1.48498 * 109.47234 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.47101 * 300.00324 * 25 23 21 28 28 H 1.48501 * 109.47050 * 59.99850 * 25 23 21 29 29 H 1.09009 * 109.47082 * 269.99466 * 1 2 3 30 30 H 1.09000 * 109.47216 * 29.99771 * 1 2 3 31 31 H 1.09006 * 109.47548 * 150.00008 * 1 2 3 32 32 H 1.08999 * 109.47277 * 239.99979 * 3 2 1 33 33 H 1.08999 * 109.47318 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46791 * 120.00616 * 3 2 1 35 35 H 1.09000 * 109.46784 * 59.99800 * 7 4 2 36 36 H 1.08999 * 109.46974 * 299.99977 * 7 4 2 37 37 H 1.09003 * 109.47052 * 60.00047 * 8 7 4 38 38 H 1.08999 * 109.47242 * 299.99815 * 8 7 4 39 39 H 1.08992 * 109.74782 * 252.36489 * 12 11 9 40 40 H 1.08994 * 109.74959 * 13.10679 * 12 11 9 41 41 H 1.08995 * 110.36058 * 207.00578 * 15 13 12 42 42 H 1.08994 * 110.36569 * 329.21298 * 15 13 12 43 43 H 1.08997 * 110.41827 * 241.06552 * 16 15 13 44 44 H 1.08997 * 110.20851 * 118.81852 * 16 15 13 45 45 H 1.08996 * 109.74864 * 107.62822 * 19 11 9 46 46 H 1.08996 * 109.74468 * 346.89279 * 19 11 9 47 47 H 0.97003 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2929 -1.4342 -0.0006 5 8 1.3969 -2.3564 0.6042 6 8 3.5395 -1.1194 0.6047 7 6 2.5192 -1.8254 -1.7575 8 6 3.2818 -3.1450 -1.8920 9 6 3.4703 -3.4697 -3.3515 10 8 3.0369 -2.7198 -4.2004 11 7 4.1196 -4.5940 -3.7133 12 6 4.6503 -5.5157 -2.6962 13 6 4.2214 -6.9623 -3.0883 14 1 4.5510 -7.7055 -2.3622 15 6 2.6910 -6.9771 -3.3034 16 6 2.4947 -6.6079 -4.7828 17 6 3.9232 -6.4009 -5.3350 18 1 4.0105 -6.7094 -6.3768 19 6 4.3130 -4.9261 -5.1339 20 7 4.7848 -7.2089 -4.4378 21 6 5.8486 -8.0019 -4.7768 22 1 6.0020 -8.2883 -5.8068 23 6 6.7297 -8.4374 -3.7966 24 7 6.6539 -7.9460 -2.5781 25 14 8.0231 -9.7212 -4.2072 26 1 8.8320 -10.0137 -2.9967 27 1 7.3566 -10.9653 -4.6692 28 1 8.9085 -9.2056 -5.2822 29 1 -0.3634 -0.0001 1.0278 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 2.8241 1.3265 -0.8900 33 1 1.4892 2.0972 0.0005 34 1 2.8242 1.3264 0.8899 35 1 3.0865 -1.0278 -2.2372 36 1 1.5450 -1.9178 -2.2375 37 1 2.7149 -3.9428 -1.4121 38 1 4.2560 -3.0522 -1.4121 39 1 5.7374 -5.4436 -2.6652 40 1 4.2358 -5.2650 -1.7198 41 1 2.2901 -7.9715 -3.1072 42 1 2.2103 -6.2411 -2.6590 43 1 1.9171 -5.6879 -4.8717 44 1 1.9977 -7.4214 -5.3111 45 1 5.3580 -4.7802 -5.4072 46 1 3.6780 -4.2899 -5.7505 47 1 7.2699 -8.2502 -1.8932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493930708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:18 Heat of formation + Delta-G solvation = -60.672565 kcal Electronic energy + Delta-G solvation = -29883.461107 eV Core-core repulsion = 25808.905702 eV Total energy + Delta-G solvation = -4074.555405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.09371 -37.97764 -37.30893 -36.50403 -36.02847 -33.80957 -33.25188 -32.43793 -30.51973 -29.31020 -28.41674 -26.72220 -25.28048 -24.70837 -23.77345 -23.30859 -19.91266 -19.62580 -19.08950 -18.59961 -17.99197 -17.22850 -16.65478 -16.49229 -15.93831 -15.66304 -15.32245 -14.97732 -14.65765 -14.54555 -14.44168 -13.81632 -13.47687 -13.30087 -13.05116 -13.00981 -12.94138 -12.77200 -12.53755 -12.50769 -12.22446 -11.94079 -11.85976 -11.80804 -11.77905 -11.63244 -11.51820 -11.10497 -10.98018 -10.91496 -10.81805 -10.43096 -10.12420 -9.90034 -9.67078 -9.63809 -9.50957 -9.33624 -8.82135 -8.14053 -6.89570 -5.90160 -3.24817 0.02285 2.38210 2.95353 3.33491 3.38690 3.39458 3.42094 3.70204 3.95484 4.25108 4.37826 4.44001 4.64511 4.83583 4.98081 5.06657 5.10140 5.22924 5.27693 5.32440 5.40264 5.45416 5.47498 5.54281 5.63487 5.66771 5.70206 5.74303 5.85097 5.94508 6.05615 6.15801 6.24272 6.34193 6.49380 6.52321 6.59078 6.68720 6.83411 6.89535 7.18463 7.40755 7.60633 7.97674 8.08198 8.55281 9.00363 9.62362 10.38668 11.23267 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.002831 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.320262 B = 9886.949798 C =10411.917948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.010 6.010 3 C 0.090 3.910 4 S 2.609 3.391 5 O -0.951 6.951 6 O -0.951 6.951 7 C -0.606 4.606 8 C -0.134 4.134 9 C 0.516 3.484 10 O -0.563 6.563 11 N -0.588 5.588 12 C 0.096 3.904 13 C 0.168 3.832 14 H 0.123 0.877 15 C -0.136 4.136 16 C -0.124 4.124 17 C 0.133 3.867 18 H 0.077 0.923 19 C 0.103 3.897 20 N -0.585 5.585 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.002 4.002 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 14.762 3.910 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.849 5.849 3 C -0.056 4.056 4 S 2.702 3.298 5 O -0.941 6.941 6 O -0.941 6.941 7 C -0.735 4.735 8 C -0.175 4.175 9 C 0.302 3.698 10 O -0.443 6.443 11 N -0.319 5.319 12 C -0.028 4.028 13 C 0.060 3.940 14 H 0.140 0.860 15 C -0.175 4.175 16 C -0.163 4.163 17 C 0.025 3.975 18 H 0.096 0.904 19 C -0.021 4.021 20 N -0.306 5.306 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.561 5.561 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.022 14.544 4.332 18.755 hybrid contribution 0.662 -0.383 -0.868 1.157 sum -10.360 14.161 3.464 17.884 Atomic orbital electron populations 1.21527 0.78162 1.03105 1.02429 1.57415 1.15304 1.21887 1.90317 1.21550 0.96687 0.85045 1.02291 1.05202 0.73934 0.73076 0.77561 1.93604 1.64621 1.62268 1.73580 1.93598 1.44016 1.82864 1.73600 1.30402 1.10698 1.06432 1.26012 1.21370 1.02469 0.95655 0.98020 1.20020 0.78546 0.81279 0.89951 1.90616 1.51635 1.49596 1.52500 1.48208 1.53967 1.21189 1.08503 1.23097 1.00205 0.91359 0.88108 1.22309 0.87849 0.93499 0.90370 0.85998 1.22526 0.99314 0.99860 0.95796 1.22373 0.97338 0.99771 0.96791 1.21980 0.90594 0.89414 0.95516 0.90448 1.22367 1.00951 0.98026 0.80795 1.45182 1.32559 1.51197 1.01641 1.18967 1.00507 1.21869 0.94123 0.90624 1.24815 0.98213 1.00599 0.96308 1.69791 1.39508 1.44582 1.02265 0.86189 0.81037 0.81384 0.77042 1.21564 1.21181 1.21128 0.92257 0.90961 0.90916 0.92177 0.90237 0.91307 0.84478 0.84482 0.87503 0.87518 0.89445 0.92191 0.92521 0.93126 0.92706 0.92625 0.91825 0.90708 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.17 59.84 0.61 1.24 16 2 N -1.01 -8.69 3.52 -129.20 -0.45 -9.15 16 3 C 0.09 0.61 10.26 59.85 0.61 1.22 16 4 S 2.61 29.34 5.38 -107.50 -0.58 28.76 16 5 O -0.95 -13.19 17.09 -57.54 -0.98 -14.17 16 6 O -0.95 -13.36 17.11 -57.54 -0.98 -14.35 16 7 C -0.61 -6.67 5.47 37.16 0.20 -6.46 16 8 C -0.13 -1.81 4.09 -27.88 -0.11 -1.93 16 9 C 0.52 8.89 7.70 -10.98 -0.08 8.80 16 10 O -0.56 -10.82 15.45 5.56 0.09 -10.74 16 11 N -0.59 -10.83 2.29 -170.27 -0.39 -11.22 16 12 C 0.10 1.86 5.81 -2.13 -0.01 1.85 16 13 C 0.17 3.56 3.22 -64.57 -0.21 3.35 16 14 H 0.12 2.93 6.35 -51.93 -0.33 2.60 16 15 C -0.14 -2.47 6.19 -25.53 -0.16 -2.63 16 16 C -0.12 -2.18 6.18 -25.54 -0.16 -2.34 16 17 C 0.13 2.60 4.27 -65.66 -0.28 2.32 16 18 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 19 C 0.10 1.95 5.93 -3.23 -0.02 1.93 16 20 N -0.58 -13.48 2.78 -151.39 -0.42 -13.90 16 21 C -0.23 -5.80 10.37 -15.06 -0.16 -5.95 16 22 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 23 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 24 N -0.92 -24.11 10.40 55.49 0.58 -23.53 16 25 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 31 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.35 7.79 -51.93 -0.40 -0.05 16 34 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 35 H 0.14 1.40 8.10 -51.92 -0.42 0.98 16 36 H 0.14 1.38 8.10 -51.92 -0.42 0.96 16 37 H 0.11 1.31 7.59 -51.93 -0.39 0.91 16 38 H 0.11 1.33 8.06 -51.93 -0.42 0.91 16 39 H 0.09 1.96 7.83 -51.93 -0.41 1.55 16 40 H 0.06 0.99 6.09 -51.93 -0.32 0.68 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 43 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 47 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -32.85 381.31 -9.89 -42.74 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.61 Total: 2.73 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.14 Total: 1.26 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.69 Total: -57.80 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.88 Total: -39.26 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 16 Polarization: 29.34 SS G_CDS: -0.58 Total: 28.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.85 -9.89 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493930708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.931 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds