Wall clock time and date at job start Wed Apr 1 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00002 * 2 1 4 4 S 1.65603 * 119.99929 * 180.02562 * 2 1 3 5 5 O 1.42096 * 104.27634 * 333.92596 * 4 2 1 6 6 O 1.42102 * 104.27691 * 206.06761 * 4 2 1 7 7 C 1.81408 * 104.44943 * 89.99764 * 4 2 1 8 8 C 1.52997 * 109.46995 * 179.97438 * 7 4 2 9 9 C 1.50701 * 109.47052 * 180.02562 * 8 7 4 10 10 O 1.21277 * 119.99792 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.47171 * 120.70602 * 0.02562 * 11 9 8 13 13 C 1.55896 * 107.94597 * 132.41237 * 12 11 9 14 14 H 1.09000 * 112.45394 * 181.84489 * 13 12 11 15 15 C 1.54550 * 108.44191 * 307.12883 * 13 12 11 16 16 C 1.53736 * 104.95341 * 88.29235 * 15 13 12 17 17 C 1.54543 * 104.95444 * 359.97438 * 16 15 13 18 18 H 1.09001 * 112.18661 * 146.28334 * 17 16 15 19 19 C 1.47161 * 120.71093 * 180.02562 * 11 9 8 20 20 N 1.48306 * 106.17911 * 58.77766 * 13 12 11 21 21 C 1.36943 * 128.07355 * 106.44120 * 20 13 12 22 22 H 1.07996 * 119.99617 * 164.67845 * 21 20 13 23 23 C 1.38812 * 119.99858 * 344.68031 * 21 20 13 24 24 N 1.31613 * 120.00190 * 350.72783 * 23 21 20 25 25 Si 1.86803 * 119.99697 * 170.72582 * 23 21 20 26 26 H 1.48498 * 109.47234 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.47101 * 300.00324 * 25 23 21 28 28 H 1.48501 * 109.47050 * 59.99850 * 25 23 21 29 29 H 1.09009 * 109.47082 * 269.99466 * 1 2 3 30 30 H 1.09000 * 109.47216 * 29.99771 * 1 2 3 31 31 H 1.09006 * 109.47548 * 150.00008 * 1 2 3 32 32 H 1.08999 * 109.47277 * 239.99979 * 3 2 1 33 33 H 1.08999 * 109.47318 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46791 * 120.00616 * 3 2 1 35 35 H 1.09000 * 109.46784 * 59.99800 * 7 4 2 36 36 H 1.08999 * 109.46974 * 299.99977 * 7 4 2 37 37 H 1.09003 * 109.47052 * 60.00047 * 8 7 4 38 38 H 1.08999 * 109.47242 * 299.99815 * 8 7 4 39 39 H 1.08992 * 109.74782 * 252.36489 * 12 11 9 40 40 H 1.08994 * 109.74959 * 13.10679 * 12 11 9 41 41 H 1.08995 * 110.36058 * 207.00578 * 15 13 12 42 42 H 1.08994 * 110.36569 * 329.21298 * 15 13 12 43 43 H 1.08997 * 110.41827 * 241.06552 * 16 15 13 44 44 H 1.08997 * 110.20851 * 118.81852 * 16 15 13 45 45 H 1.08996 * 109.74864 * 107.62822 * 19 11 9 46 46 H 1.08996 * 109.74468 * 346.89279 * 19 11 9 47 47 H 0.97003 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2929 -1.4342 -0.0006 5 8 1.3969 -2.3564 0.6042 6 8 3.5395 -1.1194 0.6047 7 6 2.5192 -1.8254 -1.7575 8 6 3.2818 -3.1450 -1.8920 9 6 3.4703 -3.4697 -3.3515 10 8 3.0369 -2.7198 -4.2004 11 7 4.1196 -4.5940 -3.7133 12 6 4.6503 -5.5157 -2.6962 13 6 4.2214 -6.9623 -3.0883 14 1 4.5510 -7.7055 -2.3622 15 6 2.6910 -6.9771 -3.3034 16 6 2.4947 -6.6079 -4.7828 17 6 3.9232 -6.4009 -5.3350 18 1 4.0105 -6.7094 -6.3768 19 6 4.3130 -4.9261 -5.1339 20 7 4.7848 -7.2089 -4.4378 21 6 5.8486 -8.0019 -4.7768 22 1 6.0020 -8.2883 -5.8068 23 6 6.7297 -8.4374 -3.7966 24 7 6.6539 -7.9460 -2.5781 25 14 8.0231 -9.7212 -4.2072 26 1 8.8320 -10.0137 -2.9967 27 1 7.3566 -10.9653 -4.6692 28 1 8.9085 -9.2056 -5.2822 29 1 -0.3634 -0.0001 1.0278 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 2.8241 1.3265 -0.8900 33 1 1.4892 2.0972 0.0005 34 1 2.8242 1.3264 0.8899 35 1 3.0865 -1.0278 -2.2372 36 1 1.5450 -1.9178 -2.2375 37 1 2.7149 -3.9428 -1.4121 38 1 4.2560 -3.0522 -1.4121 39 1 5.7374 -5.4436 -2.6652 40 1 4.2358 -5.2650 -1.7198 41 1 2.2901 -7.9715 -3.1072 42 1 2.2103 -6.2411 -2.6590 43 1 1.9171 -5.6879 -4.8717 44 1 1.9977 -7.4214 -5.3111 45 1 5.3580 -4.7802 -5.4072 46 1 3.6780 -4.2899 -5.7505 47 1 7.2699 -8.2502 -1.8932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493930708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:17 Heat of formation + Delta-G solvation = -82.825633 kcal Electronic energy + Delta-G solvation = -29884.421736 eV Core-core repulsion = 25808.905702 eV Total energy + Delta-G solvation = -4075.516034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.57450 -39.46854 -38.28418 -37.22910 -36.89244 -35.40931 -34.51743 -34.03254 -32.05970 -31.05332 -28.92222 -28.17632 -26.49832 -25.58919 -25.41809 -24.69716 -21.45621 -21.10427 -20.18924 -19.93802 -19.08546 -18.31831 -17.92035 -17.57200 -17.15896 -16.97334 -16.71424 -16.35376 -16.05398 -15.56183 -15.34512 -15.26991 -14.69340 -14.59791 -14.40263 -14.30941 -14.12133 -13.66742 -13.54438 -13.49719 -13.32655 -13.28699 -13.19803 -13.15127 -12.86378 -12.70909 -12.60224 -12.57618 -12.51670 -12.48338 -12.01181 -11.93420 -11.85278 -11.48628 -11.43294 -11.14493 -10.97128 -10.60259 -9.98766 -9.74302 -8.69168 -7.84994 -5.19235 -0.84991 1.50231 1.51424 1.57244 1.59220 1.61418 2.07768 2.51727 2.76745 3.10740 3.31699 3.34591 3.47213 3.58607 3.76339 3.85933 4.08264 4.12751 4.21820 4.25975 4.30765 4.41298 4.45641 4.52110 4.57043 4.60338 4.72554 4.73576 4.80904 4.81511 4.97345 4.99719 5.01341 5.04738 5.06301 5.07532 5.15229 5.33652 5.36672 5.55104 5.58094 5.60964 5.82623 6.24312 6.53747 7.08862 7.14160 7.73147 8.52333 9.26365 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.002831 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.320262 B = 9886.949798 C =10411.917948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.008 6.008 3 C 0.079 3.921 4 S 2.627 3.373 5 O -0.979 6.979 6 O -0.983 6.983 7 C -0.598 4.598 8 C -0.143 4.143 9 C 0.518 3.482 10 O -0.580 6.580 11 N -0.592 5.592 12 C 0.108 3.892 13 C 0.161 3.839 14 H 0.090 0.910 15 C -0.128 4.128 16 C -0.113 4.113 17 C 0.129 3.871 18 H 0.082 0.918 19 C 0.109 3.891 20 N -0.605 5.605 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.049 4.049 24 N -0.932 5.932 25 Si 0.969 3.031 26 H -0.296 1.296 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 16.085 3.671 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.848 5.848 3 C -0.066 4.066 4 S 2.721 3.279 5 O -0.969 6.969 6 O -0.973 6.973 7 C -0.727 4.727 8 C -0.184 4.184 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.323 5.323 12 C -0.016 4.016 13 C 0.053 3.947 14 H 0.108 0.892 15 C -0.167 4.167 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.100 0.900 19 C -0.016 4.016 20 N -0.327 5.327 21 C -0.365 4.365 22 H 0.091 0.909 23 C -0.244 4.244 24 N -0.579 5.579 25 Si 0.798 3.202 26 H -0.222 1.222 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.832 15.885 4.089 20.826 hybrid contribution 1.178 -0.707 -0.841 1.611 sum -11.654 15.178 3.248 19.410 Atomic orbital electron populations 1.21789 0.76835 1.04694 1.02987 1.57210 1.16126 1.21410 1.90065 1.21793 0.97475 0.84976 1.02365 1.04463 0.73000 0.73173 0.77269 1.93562 1.65126 1.63773 1.74446 1.93555 1.45720 1.83463 1.74571 1.30354 1.11205 1.05336 1.25852 1.21506 1.03840 0.97639 0.95372 1.20541 0.77368 0.80207 0.91334 1.90607 1.52170 1.49819 1.53547 1.48193 1.54465 1.21714 1.07909 1.22782 0.98248 0.90849 0.89692 1.22269 0.89825 0.93558 0.89003 0.89196 1.22451 0.96841 1.00763 0.96637 1.22282 0.95959 1.00715 0.96193 1.22153 0.91167 0.89139 0.95425 0.90019 1.22195 0.99891 0.97882 0.81617 1.45359 1.32528 1.51643 1.03146 1.19208 1.01218 1.22018 0.94086 0.90856 1.25437 1.00064 1.02407 0.96499 1.69951 1.39918 1.45405 1.02622 0.85314 0.79009 0.79489 0.76347 1.22203 1.20956 1.20987 0.92310 0.88146 0.90646 0.91170 0.87442 0.92337 0.83575 0.83145 0.85897 0.86630 0.93029 0.89297 0.92306 0.91057 0.91516 0.91556 0.93917 0.89647 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.17 127.77 1.30 2.18 16 2 N -1.01 -15.09 3.52 -562.68 -1.98 -17.07 16 3 C 0.08 0.89 10.26 127.77 1.31 2.20 16 4 S 2.63 54.92 5.38 -56.49 -0.30 54.61 16 5 O -0.98 -25.81 17.09 -127.65 -2.18 -27.99 16 6 O -0.98 -26.79 17.11 -127.65 -2.18 -28.97 16 7 C -0.60 -11.70 5.47 71.98 0.39 -11.30 16 8 C -0.14 -3.55 4.09 29.85 0.12 -3.43 16 9 C 0.52 16.79 7.70 87.66 0.68 17.47 16 10 O -0.58 -20.98 15.45 -3.02 -0.05 -21.03 16 11 N -0.59 -21.17 2.29 -811.01 -1.86 -23.02 16 12 C 0.11 4.18 5.81 87.25 0.51 4.68 16 13 C 0.16 6.82 3.22 46.17 0.15 6.97 16 14 H 0.09 4.42 6.35 -2.39 -0.02 4.40 16 15 C -0.13 -4.42 6.19 31.37 0.19 -4.22 16 16 C -0.11 -3.72 6.18 31.37 0.19 -3.53 16 17 C 0.13 4.92 4.27 45.46 0.19 5.11 16 18 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 19 C 0.11 4.06 5.93 86.55 0.51 4.57 16 20 N -0.61 -28.03 2.78 -632.89 -1.76 -29.79 16 21 C -0.24 -12.26 10.37 84.03 0.87 -11.39 16 22 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 23 C -0.05 -2.59 5.42 84.86 0.46 -2.13 16 24 N -0.93 -50.34 10.40 21.65 0.23 -50.12 16 25 Si 0.97 43.52 29.56 68.60 2.03 45.54 16 26 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.10 0.52 7.92 -2.39 -0.02 0.50 16 31 H 0.07 0.78 7.79 -2.38 -0.02 0.76 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 0.60 7.79 -2.39 -0.02 0.58 16 34 H 0.06 0.79 7.90 -2.39 -0.02 0.77 16 35 H 0.15 2.62 8.10 -2.39 -0.02 2.60 16 36 H 0.15 2.57 8.10 -2.39 -0.02 2.55 16 37 H 0.12 2.67 7.59 -2.39 -0.02 2.66 16 38 H 0.12 2.69 8.06 -2.39 -0.02 2.67 16 39 H 0.05 2.37 7.83 -2.39 -0.02 2.35 16 40 H 0.09 2.85 6.09 -2.39 -0.01 2.83 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 2.16 7.88 -2.39 -0.02 2.14 16 43 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 3.00 7.11 -2.39 -0.02 2.98 16 47 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -70.73 381.31 -0.22 -70.95 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.96 Total: 19.70 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.88 Total: 7.19 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -5.37 Total: -120.00 kcal Atomic # 8 Polarization: -73.59 SS G_CDS: -4.41 Total: -78.00 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.30 Total: 54.61 kcal Total: -70.73 -0.22 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493930708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.878 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds