Wall clock time and date at job start Wed Apr 1 2020 04:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47113 * 45.87011 * 3 2 1 5 5 N 1.46900 * 109.47280 * 174.84553 * 4 3 2 6 6 C 1.46896 * 111.00064 * 75.47562 * 5 4 3 7 7 C 1.50708 * 109.47191 * 199.61844 * 6 5 4 8 8 H 1.07999 * 119.99760 * 355.07602 * 7 6 5 9 9 C 1.37872 * 119.99860 * 175.06902 * 7 6 5 10 10 N 1.31515 * 120.00156 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46965 * 90.00127 * 11 9 7 13 13 H 1.48501 * 109.47003 * 210.00658 * 11 9 7 14 14 H 1.48504 * 109.46864 * 330.00347 * 11 9 7 15 15 C 1.46906 * 111.00262 * 199.43205 * 5 4 3 16 16 N 1.46495 * 109.46983 * 81.04146 * 15 5 4 17 17 C 1.46770 * 124.35057 * 90.00513 * 16 15 5 18 18 C 1.54477 * 105.47299 * 197.01489 * 17 16 15 19 19 H 1.08997 * 110.97140 * 92.70643 * 18 17 16 20 20 C 1.50702 * 110.96499 * 216.46249 * 18 17 16 21 21 C 1.38240 * 119.97303 * 59.72768 * 20 18 17 22 22 C 1.38202 * 120.02424 * 179.76537 * 21 20 18 23 23 C 1.38462 * 119.97438 * 0.50418 * 22 21 20 24 24 F 1.35091 * 120.02708 * 179.76706 * 23 22 21 25 25 C 1.38460 * 119.94467 * 359.75047 * 23 22 21 26 26 C 1.38197 * 119.97916 * 359.97438 * 25 23 22 27 27 C 1.54632 * 101.76718 * 334.58038 * 18 17 16 28 28 C 1.34424 * 124.35396 * 269.70007 * 16 15 5 29 29 O 1.21286 * 124.93759 * 359.58222 * 28 16 15 30 30 H 1.08995 * 109.47632 * 285.86703 * 3 2 1 31 31 H 1.09003 * 109.46901 * 165.86342 * 3 2 1 32 32 H 1.09000 * 109.47302 * 54.84094 * 4 3 2 33 33 H 1.09000 * 109.46852 * 294.84385 * 4 3 2 34 34 H 1.09002 * 109.47208 * 79.62100 * 6 5 4 35 35 H 1.08998 * 109.47214 * 319.61712 * 6 5 4 36 36 H 0.97000 * 119.99658 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.46874 * 201.04700 * 15 5 4 38 38 H 1.09000 * 109.46510 * 321.04797 * 15 5 4 39 39 H 1.09004 * 110.24083 * 316.01198 * 17 16 15 40 40 H 1.08999 * 110.24371 * 77.92128 * 17 16 15 41 41 H 1.07994 * 119.99011 * 0.02562 * 21 20 18 42 42 H 1.08004 * 120.01669 * 180.25912 * 22 21 20 43 43 H 1.08008 * 120.01087 * 180.02562 * 25 23 22 44 44 H 1.07995 * 119.99096 * 180.02562 * 26 25 23 45 45 H 1.09000 * 110.48392 * 143.47864 * 27 18 17 46 46 H 1.08999 * 110.48385 * 265.99226 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0035 -1.0354 5 7 4.5822 -0.9149 -1.1234 6 6 5.2190 -1.5576 0.0338 7 6 6.6316 -1.0518 0.1751 8 1 7.0440 -0.3869 -0.5693 9 6 7.3973 -1.4377 1.2548 10 7 6.8951 -2.2477 2.1611 11 14 9.1480 -0.8101 1.4303 12 1 9.1440 0.4583 2.2025 13 1 9.9673 -1.8220 2.1444 14 1 9.7242 -0.5677 0.0832 15 6 5.0700 -1.4944 -2.3821 16 7 4.9199 -0.5149 -3.4611 17 6 5.9448 0.4658 -3.8377 18 6 5.2074 1.5292 -4.6814 19 1 4.8636 2.3534 -4.0564 20 6 6.0829 2.0322 -5.8000 21 6 6.5632 1.1510 -6.7508 22 6 7.3623 1.6119 -7.7798 23 6 7.6903 2.9551 -7.8525 24 9 8.4752 3.4061 -8.8553 25 6 7.2130 3.8359 -6.8967 26 6 6.4095 3.3736 -5.8717 27 6 4.0125 0.7190 -5.2354 28 6 3.8282 -0.4028 -4.2373 29 8 2.8384 -1.0981 -4.1485 30 1 2.9716 -0.2801 0.9884 31 1 2.9709 0.9974 -0.2510 32 1 2.6816 -0.7765 -2.0078 33 1 2.8329 -2.0117 -0.7352 34 1 5.2328 -2.6377 -0.1125 35 1 4.6562 -1.3204 0.9366 36 1 7.4340 -2.5195 2.9205 37 1 6.1217 -1.7601 -2.2761 38 1 4.4917 -2.3874 -2.6190 39 1 6.3748 0.9231 -2.9465 40 1 6.7252 -0.0125 -4.4295 41 1 6.3105 0.1027 -6.6917 42 1 7.7340 0.9240 -8.5249 43 1 7.4679 4.8839 -6.9525 44 1 6.0367 4.0605 -5.1263 45 1 3.1190 1.3415 -5.2832 46 1 4.2487 0.3160 -6.2202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902025708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:22 Heat of formation + Delta-G solvation = -19.530552 kcal Electronic energy + Delta-G solvation = -29613.050815 eV Core-core repulsion = 25417.208301 eV Total energy + Delta-G solvation = -4195.842515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.15771 -40.72589 -39.15360 -37.28514 -36.30777 -35.94864 -33.11664 -32.70845 -31.48153 -30.83687 -29.51977 -27.45118 -26.91662 -24.97582 -23.67433 -23.20086 -22.88146 -20.75912 -20.55856 -19.21161 -18.03697 -17.32707 -17.09050 -16.57453 -16.42677 -16.09370 -15.85293 -15.60870 -15.22364 -14.81740 -14.61800 -14.39489 -14.12895 -13.93941 -13.78161 -13.74407 -13.69049 -13.19364 -12.98697 -12.80023 -12.68266 -12.60607 -12.19520 -12.13731 -11.97808 -11.56543 -11.52667 -11.43717 -11.38810 -11.10656 -10.98858 -10.94077 -10.72829 -10.45587 -9.98892 -9.64744 -9.43039 -9.41403 -8.81674 -8.62174 -8.54332 -7.56455 -6.15598 -4.18493 0.78976 0.91293 2.69347 3.01717 3.06675 3.17484 3.23390 3.29887 3.31243 3.32192 3.95841 4.16429 4.19836 4.32104 4.34879 4.52469 4.56876 4.57533 4.86118 4.93855 4.98024 5.00774 5.17908 5.21403 5.42325 5.45781 5.50098 5.56041 5.60070 5.67601 5.71951 5.79984 5.82504 5.86255 5.91785 5.93993 6.03731 6.21849 6.22533 6.35103 6.56281 6.63550 6.92997 7.15931 7.36691 7.64647 7.81859 7.86678 7.98032 8.30737 8.36761 8.88304 9.46951 10.94493 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.003291 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.727896 B = 8505.802574 C =11018.271890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.220 3.780 3 C -0.024 4.024 4 C 0.055 3.945 5 N -0.547 5.547 6 C 0.193 3.807 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.296 3.704 16 N -0.599 5.599 17 C 0.113 3.887 18 C -0.061 4.061 19 H 0.103 0.897 20 C -0.078 4.078 21 C -0.085 4.085 22 C -0.150 4.150 23 C 0.093 3.907 24 F -0.142 7.142 25 C -0.152 4.152 26 C -0.081 4.081 27 C -0.148 4.148 28 C 0.515 3.485 29 O -0.538 6.538 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.036 0.964 34 H -0.006 1.006 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 9.706 -17.111 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.098 4.098 3 C -0.064 4.064 4 C -0.075 4.075 5 N -0.274 5.274 6 C 0.068 3.932 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.085 3.915 16 N -0.333 5.333 17 C -0.010 4.010 18 C -0.080 4.080 19 H 0.122 0.878 20 C -0.079 4.079 21 C -0.103 4.103 22 C -0.169 4.169 23 C 0.074 3.926 24 F -0.121 7.121 25 C -0.171 4.171 26 C -0.099 4.099 27 C -0.189 4.189 28 C 0.302 3.698 29 O -0.415 6.415 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.012 0.988 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.119 0.881 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.137 9.670 -16.837 19.417 hybrid contribution 1.508 -0.358 0.117 1.554 sum 1.371 9.312 -16.720 19.188 Atomic orbital electron populations 1.81146 1.13244 1.09561 1.09661 1.29443 0.95493 0.92475 0.92388 1.19336 0.80120 1.03560 1.03385 1.22055 0.90272 0.96506 0.98702 1.61813 1.02964 1.58892 1.03686 1.19810 0.94704 0.92150 0.86497 1.21084 0.96809 1.28789 1.08210 0.91870 1.24964 0.98541 0.95094 0.95709 1.69938 1.37149 1.34148 1.12157 0.86536 0.84295 0.78548 0.78222 1.20625 1.21385 1.19873 1.21803 1.01839 0.86483 0.81368 1.48511 1.16439 1.35659 1.32706 1.22158 0.90540 0.88654 0.99657 1.21117 0.93932 0.98398 0.94547 0.87840 1.19677 0.98523 0.93513 0.96191 1.20918 0.96033 1.00205 0.93100 1.21140 1.01067 0.94008 1.00699 1.17764 0.94275 0.93044 0.87564 1.91497 1.72111 1.89746 1.58752 1.21152 1.00382 1.00199 0.95326 1.20962 0.96461 0.95102 0.97330 1.22498 0.99846 0.96892 0.99621 1.20810 0.82443 0.84531 0.82027 1.90711 1.30744 1.48443 1.71627 0.86920 0.86958 0.90089 0.94574 0.98797 0.94107 0.92753 0.87712 0.92910 0.88827 0.91067 0.84786 0.84717 0.84717 0.84626 0.88051 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.22 18.54 42.16 0.78 -7.44 16 2 C 0.22 3.47 15.43 -20.76 -0.32 3.15 16 3 C -0.02 -0.34 5.74 -29.52 -0.17 -0.51 16 4 C 0.05 0.90 4.78 -3.83 -0.02 0.88 16 5 N -0.55 -9.71 4.45 -239.98 -1.07 -10.77 16 6 C 0.19 4.22 4.52 -4.97 -0.02 4.20 16 7 C -0.51 -12.25 8.51 -34.44 -0.29 -12.54 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 11 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 15 C 0.30 4.81 5.54 -63.31 -0.35 4.46 16 16 N -0.60 -8.06 3.14 -175.90 -0.55 -8.62 16 17 C 0.11 1.19 6.83 -3.12 -0.02 1.17 16 18 C -0.06 -0.50 3.37 -90.14 -0.30 -0.81 16 19 H 0.10 0.78 7.96 -51.93 -0.41 0.37 16 20 C -0.08 -0.60 4.96 -104.62 -0.52 -1.12 16 21 C -0.08 -0.64 8.05 -39.59 -0.32 -0.96 16 22 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 23 C 0.09 0.82 7.30 -39.42 -0.29 0.53 16 24 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 25 C -0.15 -1.17 10.03 -39.51 -0.40 -1.56 16 26 C -0.08 -0.58 9.68 -39.59 -0.38 -0.96 16 27 C -0.15 -1.40 6.30 -26.74 -0.17 -1.57 16 28 C 0.51 7.11 7.37 -10.86 -0.08 7.03 16 29 O -0.54 -9.55 15.76 5.55 0.09 -9.46 16 30 H 0.11 1.65 6.88 -51.93 -0.36 1.29 16 31 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.39 5.16 -51.93 -0.27 1.12 16 33 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 34 H -0.01 -0.14 8.00 -51.93 -0.42 -0.55 16 35 H 0.04 0.95 6.54 -51.93 -0.34 0.61 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.10 1.78 7.24 -51.93 -0.38 1.40 16 38 H 0.05 0.90 7.69 -51.93 -0.40 0.50 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.68 7.13 -51.93 -0.37 0.30 16 41 H 0.13 0.88 7.33 -52.49 -0.38 0.50 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.14 0.73 7.99 -52.49 -0.42 0.31 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.83 6.67 -51.93 -0.35 0.48 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -30.06 390.49 -9.43 -39.49 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.16 Total: -0.05 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.15 Total: 1.20 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.10 Total: -50.29 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.06 -9.43 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902025708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.958 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds