Wall clock time and date at job start Wed Apr 1 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00007 * 2 1 4 4 C 1.53004 * 109.47149 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46885 * 65.00207 * 4 3 2 6 6 C 1.37101 * 120.00238 * 269.99941 * 5 4 3 7 7 H 1.08000 * 120.00146 * 140.61733 * 6 5 4 8 8 C 1.38947 * 119.99744 * 320.62474 * 6 5 4 9 9 N 1.31417 * 120.00005 * 159.11379 * 8 6 5 10 10 Si 1.86802 * 120.00133 * 339.10484 * 8 6 5 11 11 H 1.48506 * 109.46692 * 95.81718 * 10 8 6 12 12 H 1.48496 * 109.47399 * 215.81521 * 10 8 6 13 13 H 1.48497 * 109.47088 * 335.81951 * 10 8 6 14 14 C 1.34776 * 120.00026 * 89.99884 * 5 4 3 15 15 O 1.21296 * 119.99707 * 5.01009 * 14 5 4 16 16 C 1.50703 * 120.00169 * 185.00905 * 14 5 4 17 17 C 1.53002 * 109.46882 * 185.44758 * 16 14 5 18 18 C 1.50697 * 109.46806 * 179.20276 * 17 16 14 19 19 N 1.30381 * 126.19117 * 90.02676 * 18 17 16 20 20 N 1.28662 * 109.52983 * 180.02562 * 19 18 17 21 21 C 1.31232 * 109.24537 * 359.97438 * 20 19 18 22 22 C 1.47852 * 126.37712 * 180.02562 * 21 20 19 23 23 C 1.39560 * 120.14100 * 179.69526 * 22 21 20 24 24 C 1.37966 * 119.85271 * 179.72408 * 23 22 21 25 25 C 1.38348 * 120.14339 * 0.57436 * 24 23 22 26 26 C 1.38361 * 120.28969 * 359.70554 * 25 24 23 27 27 C 1.37967 * 120.14271 * 359.97438 * 26 25 24 28 28 O 1.34415 * 126.18129 * 269.71350 * 18 17 16 29 29 H 1.08998 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46879 * 299.99729 * 1 2 3 31 31 H 1.08994 * 109.47058 * 59.99451 * 1 2 3 32 32 H 1.09003 * 109.46719 * 60.00505 * 3 2 1 33 33 H 1.08988 * 109.47424 * 300.00367 * 3 2 1 34 34 H 1.08998 * 109.46891 * 305.00490 * 4 3 2 35 35 H 1.08994 * 109.47046 * 185.00423 * 4 3 2 36 36 H 0.97002 * 119.99608 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46868 * 65.45042 * 16 14 5 38 38 H 1.08997 * 109.46720 * 305.44240 * 16 14 5 39 39 H 1.09001 * 109.46933 * 59.19982 * 17 16 14 40 40 H 1.08998 * 109.47148 * 299.19975 * 17 16 14 41 41 H 1.08000 * 120.07330 * 0.03064 * 23 22 21 42 42 H 1.08000 * 119.92688 * 180.29952 * 24 23 22 43 43 H 1.07997 * 119.85928 * 179.71988 * 25 24 23 44 44 H 1.07998 * 119.92730 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.06830 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0969 -0.7985 -1.3371 7 1 3.7941 -1.3129 -2.2372 8 6 4.6092 -1.5181 -0.2646 9 7 4.3592 -2.8037 -0.1565 10 14 5.6534 -0.6581 1.0236 11 1 4.7987 -0.2677 2.1736 12 1 6.7211 -1.5785 1.4905 13 1 6.2704 0.5556 0.4310 14 6 4.2614 1.3339 -2.3218 15 8 4.2423 2.5425 -2.2216 16 6 4.6047 0.6925 -3.6416 17 6 5.0160 1.7741 -4.6426 18 6 5.3781 1.1310 -5.9565 19 7 4.5637 0.8891 -6.9455 20 7 5.2101 0.3322 -7.9085 21 6 6.4694 0.1992 -7.5643 22 6 7.5457 -0.3927 -8.3872 23 6 8.8484 -0.4635 -7.8917 24 6 9.8470 -1.0223 -8.6624 25 6 9.5616 -1.5010 -9.9287 26 6 8.2733 -1.4286 -10.4281 27 6 7.2643 -0.8782 -9.6650 28 8 6.6003 0.7084 -6.3229 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8898 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1765 0.0890 36 1 4.7172 -3.3061 0.5922 37 1 3.7351 0.1569 -4.0224 38 1 5.4296 -0.0062 -3.5023 39 1 5.8769 2.3191 -4.2552 40 1 4.1863 2.4648 -4.7926 41 1 9.0734 -0.0862 -6.9050 42 1 10.8546 -1.0820 -8.2782 43 1 10.3477 -1.9334 -10.5298 44 1 8.0570 -1.8045 -11.4172 45 1 6.2591 -0.8226 -10.0559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556908310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:35 Heat of formation + Delta-G solvation = -2.794845 kcal Electronic energy + Delta-G solvation = -29261.469071 eV Core-core repulsion = 25053.979482 eV Total energy + Delta-G solvation = -4207.489590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.07558 -39.37828 -39.10001 -37.13441 -36.10185 -35.01737 -34.04296 -32.32220 -31.98031 -31.33661 -29.89785 -28.84559 -26.01956 -25.48945 -24.56174 -24.29950 -23.06241 -22.28686 -21.79715 -21.39163 -19.02509 -18.05278 -17.45792 -16.81935 -16.72422 -16.39184 -16.03883 -15.89192 -15.54541 -15.10527 -14.85183 -14.71860 -14.38674 -14.24621 -14.09258 -13.79576 -13.45018 -13.27331 -13.12526 -12.61182 -12.41375 -12.35328 -12.04802 -11.94689 -11.80515 -11.71620 -11.65072 -11.47931 -11.36397 -10.96650 -10.90059 -10.79111 -10.65920 -10.29689 -10.12123 -9.94824 -9.33699 -9.24114 -9.08437 -8.75242 -8.58868 -7.83236 -6.43812 -4.04144 0.31561 1.02927 1.59292 2.19311 2.48208 3.04812 3.20561 3.26844 3.47741 3.59920 3.69387 4.12850 4.20860 4.38356 4.46511 4.58970 4.59181 4.76903 4.95087 5.00711 5.03634 5.24589 5.28366 5.32866 5.43382 5.54547 5.56287 5.59545 5.67495 5.68159 5.77984 5.83332 5.91587 5.91962 6.03395 6.05915 6.09175 6.09228 6.12258 6.26990 6.29727 6.40578 6.46565 6.51513 7.32450 7.79481 8.07731 8.23549 8.33049 8.93270 9.30739 9.61005 10.67013 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.002473 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.651969 B =11318.296701 C =12152.218913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.055 3.945 4 C 0.100 3.900 5 N -0.451 5.451 6 C -0.336 4.336 7 H 0.102 0.898 8 C 0.076 3.924 9 N -0.853 5.853 10 Si 0.871 3.129 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.482 3.518 15 O -0.605 6.605 16 C -0.116 4.116 17 C -0.011 4.011 18 C 0.189 3.811 19 N -0.287 5.287 20 N -0.273 5.273 21 C 0.192 3.808 22 C -0.017 4.017 23 C -0.085 4.085 24 C -0.121 4.121 25 C -0.100 4.100 26 C -0.122 4.122 27 C -0.070 4.070 28 O -0.217 6.217 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.273 0.727 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.849 3.532 -12.655 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.023 4.023 4 C -0.023 4.023 5 N -0.170 5.170 6 C -0.463 4.463 7 H 0.120 0.880 8 C -0.132 4.132 9 N -0.488 5.488 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.271 3.729 15 O -0.491 6.491 16 C -0.157 4.157 17 C -0.050 4.050 18 C -0.020 4.020 19 N -0.134 5.134 20 N -0.121 5.121 21 C -0.016 4.016 22 C -0.019 4.019 23 C -0.105 4.105 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.089 4.089 28 O -0.097 6.097 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.841 3.704 -13.154 14.862 hybrid contribution 1.209 0.329 1.610 2.040 sum 7.050 4.033 -11.544 14.115 Atomic orbital electron populations 1.22660 0.83021 1.02135 0.98711 1.88240 1.17671 1.26451 1.94994 1.22863 0.94855 0.85328 0.99238 1.21732 0.92268 0.99076 0.89230 1.43601 1.57121 1.07138 1.09153 1.18931 1.43474 0.78941 1.04936 0.88045 1.25234 0.95769 0.95063 0.97114 1.69772 1.40429 1.07988 1.30610 0.87027 0.80816 0.80321 0.81978 1.20094 1.21472 1.18593 1.20079 0.79955 0.86419 0.86397 1.90549 1.58439 1.14402 1.85737 1.21344 1.04239 0.97607 0.92511 1.20118 1.04334 0.97324 0.83183 1.28375 0.77259 0.96717 0.99692 1.74436 1.26604 1.14561 0.97813 1.74660 1.01277 1.14600 1.21558 1.25380 0.94867 0.99017 0.82349 1.17251 0.89289 1.02232 0.93136 1.21333 0.91294 0.97548 1.00295 1.21108 0.99418 0.98823 0.94521 1.21403 0.96911 0.97873 0.95645 1.21125 0.92642 0.99910 1.00280 1.21215 1.00634 0.95347 0.91719 1.84851 1.35370 1.59373 1.30063 0.90066 0.95218 0.94883 0.93892 0.93417 0.90798 0.89564 0.91631 0.88838 0.88408 0.87956 0.86424 0.84862 0.85023 0.85358 0.84908 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.55 10.18 -35.23 -0.36 -7.91 16 3 C 0.06 1.07 6.28 37.16 0.23 1.30 16 4 C 0.10 2.16 4.67 -4.04 -0.02 2.14 16 5 N -0.45 -10.51 2.12 -114.81 -0.24 -10.76 16 6 C -0.34 -8.58 8.43 -14.93 -0.13 -8.71 16 7 H 0.10 2.75 7.45 -52.49 -0.39 2.36 16 8 C 0.08 2.00 5.32 -17.47 -0.09 1.90 16 9 N -0.85 -23.56 13.96 55.50 0.77 -22.78 16 10 Si 0.87 20.19 25.01 -169.99 -4.25 15.94 16 11 H -0.27 -6.18 6.72 56.52 0.38 -5.80 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.48 10.48 7.62 -10.98 -0.08 10.40 16 15 O -0.60 -13.74 15.55 5.54 0.09 -13.65 16 16 C -0.12 -2.15 4.33 -27.88 -0.12 -2.28 16 17 C -0.01 -0.17 5.14 -27.88 -0.14 -0.31 16 18 C 0.19 3.11 7.73 -12.90 -0.10 3.01 16 19 N -0.29 -5.12 12.22 32.58 0.40 -4.72 16 20 N -0.27 -4.63 11.92 32.07 0.38 -4.25 16 21 C 0.19 2.91 7.99 -13.88 -0.11 2.80 16 22 C -0.02 -0.21 5.87 -104.98 -0.62 -0.83 16 23 C -0.09 -0.87 9.73 -39.19 -0.38 -1.25 16 24 C -0.12 -0.96 10.03 -39.64 -0.40 -1.35 16 25 C -0.10 -0.70 10.04 -39.50 -0.40 -1.10 16 26 C -0.12 -0.94 10.03 -39.64 -0.40 -1.33 16 27 C -0.07 -0.71 9.70 -39.19 -0.38 -1.09 16 28 O -0.22 -3.43 10.67 4.00 0.04 -3.39 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.92 8.14 -51.94 -0.42 0.50 16 34 H 0.07 1.67 3.42 -51.93 -0.18 1.49 16 35 H 0.09 1.76 7.36 -51.93 -0.38 1.38 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 38 H 0.10 1.84 7.86 -51.93 -0.41 1.43 16 39 H 0.10 1.52 8.13 -51.93 -0.42 1.09 16 40 H 0.12 1.81 8.06 -51.93 -0.42 1.39 16 41 H 0.13 1.29 7.94 -52.49 -0.42 0.88 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.14 1.38 7.87 -52.49 -0.41 0.97 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -31.71 385.78 -5.36 -37.07 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.99 Total: 3.71 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.02 Total: 4.93 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 1.31 Total: -42.51 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.23 Total: -24.95 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.25 Total: 15.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.71 -5.36 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556908310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.272 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds