Wall clock time and date at job start Wed Apr 1 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38086 * 125.89191 * 247.70520 * 3 2 1 5 5 C 1.39362 * 107.51214 * 180.02562 * 4 3 2 6 6 C 1.38005 * 107.48845 * 0.02562 * 5 4 3 7 7 C 1.47047 * 125.91797 * 180.02562 * 6 5 4 8 8 O 1.21643 * 120.00263 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99879 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46897 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.87976 * 57.38871 * 11 10 9 13 13 C 1.55135 * 110.99062 * 293.54166 * 11 10 9 14 14 C 1.54322 * 103.02006 * 206.25834 * 13 11 10 15 15 N 1.47439 * 107.23490 * 22.28319 * 14 13 11 16 16 C 1.46901 * 110.99961 * 123.25626 * 15 14 13 17 17 C 1.50701 * 109.46921 * 69.87543 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00506 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00009 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47177 * 89.99959 * 24 22 20 26 26 H 1.48505 * 109.47036 * 210.00243 * 24 22 20 27 27 H 1.48499 * 109.46776 * 329.99732 * 24 22 20 28 28 C 1.47853 * 108.56569 * 0.99003 * 15 14 13 29 29 N 1.36727 * 125.89707 * 68.02484 * 3 2 1 30 30 H 0.96994 * 125.68231 * 0.02562 * 29 3 2 31 31 H 1.07993 * 126.24362 * 0.02562 * 4 3 2 32 32 H 1.07997 * 126.25259 * 180.02562 * 5 4 3 33 33 H 0.96997 * 120.00168 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47359 * 59.99678 * 10 9 7 35 35 H 1.09000 * 109.47255 * 299.99381 * 10 9 7 36 36 H 1.09003 * 110.71015 * 87.87432 * 13 11 10 37 37 H 1.09004 * 110.70681 * 324.63747 * 13 11 10 38 38 H 1.09003 * 109.88473 * 262.87599 * 14 13 11 39 39 H 1.09003 * 110.01953 * 141.76715 * 14 13 11 40 40 H 1.09002 * 109.47401 * 309.87571 * 16 15 14 41 41 H 1.09001 * 109.46874 * 189.87583 * 16 15 14 42 42 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 43 43 H 0.96993 * 120.00255 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.36766 * 94.73414 * 28 15 14 45 45 H 1.08997 * 110.37443 * 217.07382 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3773 0.4254 1.0350 5 6 4.6999 0.2598 0.6282 6 6 4.6787 -0.2628 -0.6488 7 6 5.8562 -0.5962 -1.4641 8 8 6.9743 -0.4150 -1.0206 9 7 5.6965 -1.1026 -2.7029 10 6 6.8696 -1.4353 -3.5150 11 6 6.4138 -1.9885 -4.8668 12 1 5.7743 -1.2729 -5.3837 13 6 5.6957 -3.3529 -4.6953 14 6 5.9260 -4.0406 -6.0575 15 7 7.1078 -3.4082 -6.6718 16 6 8.1378 -4.4082 -6.9832 17 6 7.6667 -5.2772 -8.1207 18 8 6.5799 -5.0823 -8.6229 19 7 8.4533 -6.2703 -8.5807 20 6 8.0249 -7.0605 -9.6159 21 1 7.0568 -6.8874 -10.0625 22 6 8.8355 -8.0846 -10.0897 23 7 8.4252 -8.8417 -11.0823 24 14 10.5095 -8.3843 -9.3167 25 1 10.3716 -9.3480 -8.1955 26 1 11.4335 -8.9411 -10.3374 27 1 11.0542 -7.1019 -8.8031 28 6 7.6288 -2.3823 -5.7433 29 7 3.3699 -0.4135 -1.0271 30 1 3.0635 -0.7576 -1.8806 31 1 3.0459 0.8148 1.9862 32 1 5.5805 0.4972 1.2067 33 1 4.8050 -1.2475 -3.0565 34 1 7.4679 -2.1860 -2.9987 35 1 7.4687 -0.5385 -3.6724 36 1 4.6310 -3.2077 -4.5120 37 1 6.1512 -3.9297 -3.8904 38 1 5.0547 -3.8981 -6.6968 39 1 6.1088 -5.1053 -5.9118 40 1 8.3207 -5.0272 -6.1048 41 1 9.0600 -3.9027 -7.2699 42 1 9.3225 -6.4259 -8.1793 43 1 8.9910 -9.5569 -11.4128 44 1 8.4238 -2.7991 -5.1249 45 1 7.9924 -1.5177 -6.2985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317517607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:37 Heat of formation + Delta-G solvation = 19.433676 kcal Electronic energy + Delta-G solvation = -28163.792261 eV Core-core repulsion = 23989.559324 eV Total energy + Delta-G solvation = -4174.232937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08825 -40.01480 -39.23936 -37.87293 -37.06006 -35.49255 -33.97041 -32.51061 -31.83427 -31.62432 -30.60142 -29.50258 -27.54557 -25.70095 -24.16542 -23.72364 -21.88703 -21.20373 -21.03466 -20.85918 -20.02587 -19.30330 -18.27547 -17.95369 -16.86976 -16.21688 -16.04444 -15.79083 -15.45712 -15.19866 -15.04451 -14.86856 -14.62016 -14.23085 -14.10435 -13.87571 -13.74197 -13.58294 -13.46964 -13.39610 -13.10161 -12.98546 -12.84466 -12.50926 -12.34357 -12.30158 -11.80657 -11.45901 -11.30615 -11.18606 -11.08065 -10.78190 -10.68222 -10.61295 -9.99312 -9.84806 -9.69132 -9.57714 -8.97533 -8.61256 -8.19551 -8.05318 -6.32523 -3.84058 0.32517 1.55456 1.57041 2.39430 2.50603 2.76339 2.80475 3.01017 3.04874 3.13579 3.30623 3.72397 3.83896 4.08526 4.10377 4.27056 4.43418 4.47448 4.49007 4.60839 4.81068 4.98303 5.14331 5.15275 5.18643 5.20657 5.31828 5.42403 5.45922 5.52337 5.55844 5.62226 5.72287 5.74921 5.83258 5.85829 5.95495 5.99800 6.04845 6.30408 6.35317 6.76680 6.86298 7.07161 7.09448 7.55552 7.57044 8.12671 8.58927 8.93898 9.41056 9.82202 10.80641 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.001643 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.130674 B =17032.876874 C =17781.394821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.271 3.729 3 C 0.092 3.908 4 C -0.124 4.124 5 C -0.112 4.112 6 C -0.004 4.004 7 C 0.586 3.414 8 O -0.517 6.517 9 N -0.725 5.725 10 C 0.131 3.869 11 C -0.112 4.112 12 H 0.093 0.907 13 C -0.141 4.141 14 C 0.056 3.944 15 N -0.505 5.505 16 C 0.038 3.962 17 C 0.452 3.548 18 O -0.559 6.559 19 N -0.593 5.593 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.052 3.948 29 N -0.515 5.515 30 H 0.423 0.577 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.396 0.604 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.049 0.951 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 18.321 24.215 30.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.045 4.045 3 C -0.025 4.025 4 C -0.152 4.152 5 C -0.137 4.137 6 C -0.122 4.122 7 C 0.372 3.628 8 O -0.391 6.391 9 N -0.377 5.377 10 C 0.007 3.993 11 C -0.131 4.131 12 H 0.111 0.889 13 C -0.179 4.179 14 C -0.072 4.072 15 N -0.229 5.229 16 C -0.094 4.094 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.233 5.233 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.077 4.077 29 N -0.113 5.113 30 H 0.262 0.738 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.225 18.540 23.351 30.459 hybrid contribution 1.444 -1.152 0.499 1.913 sum -4.781 17.388 23.850 29.900 Atomic orbital electron populations 1.81374 1.11179 1.08605 1.05596 1.24316 0.90810 0.94158 0.95172 1.15589 0.83190 1.11957 0.91787 1.21318 0.91553 1.03732 0.98586 1.21318 0.97801 1.01372 0.93248 1.20673 0.82211 1.11419 0.97890 1.17051 0.87311 0.77642 0.80806 1.90887 1.23780 1.53111 1.71351 1.45900 1.10500 1.65525 1.15742 1.21407 0.87076 1.00939 0.89840 1.22573 0.98475 0.97706 0.94383 0.88855 1.22967 1.00634 0.95490 0.98818 1.22732 0.94824 0.97317 0.92335 1.63236 1.05578 1.12740 1.41320 1.22121 0.95474 0.94103 0.97719 1.19643 0.86752 0.83145 0.86699 1.90559 1.21975 1.71009 1.60454 1.42213 1.17456 1.30304 1.33282 1.19416 1.05417 1.09325 1.09149 0.86321 1.25031 0.98325 0.96305 0.96501 1.69618 1.37712 1.19472 1.25398 0.86678 0.84166 0.78796 0.79779 1.19695 1.20161 1.19483 1.23011 0.95334 0.96278 0.93058 1.41887 1.05252 1.49132 1.15003 0.73789 0.82254 0.81976 0.77033 0.90738 0.90506 0.91055 0.91307 0.89785 0.92506 0.93163 0.89227 0.79763 0.91625 0.93232 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -3.50 18.54 41.84 0.78 -2.73 16 2 C 0.27 1.74 15.89 -22.47 -0.36 1.38 16 3 C 0.09 0.43 6.93 -83.81 -0.58 -0.15 16 4 C -0.12 -0.51 10.80 -39.22 -0.42 -0.94 16 5 C -0.11 -0.59 10.60 -39.25 -0.42 -1.00 16 6 C 0.00 -0.02 7.04 -82.04 -0.58 -0.60 16 7 C 0.59 4.43 7.80 -12.69 -0.10 4.33 16 8 O -0.52 -5.83 16.87 5.24 0.09 -5.74 16 9 N -0.73 -4.05 5.40 -61.51 -0.33 -4.38 16 10 C 0.13 0.88 5.12 -4.04 -0.02 0.86 16 11 C -0.11 -0.84 3.10 -88.48 -0.27 -1.12 16 12 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 13 C -0.14 -1.21 6.12 -24.91 -0.15 -1.36 16 14 C 0.06 0.75 5.65 -2.84 -0.02 0.74 16 15 N -0.50 -7.32 4.85 -232.68 -1.13 -8.45 16 16 C 0.04 0.60 5.03 -4.97 -0.03 0.57 16 17 C 0.45 10.01 7.43 -10.98 -0.08 9.93 16 18 O -0.56 -14.63 15.12 5.55 0.08 -14.55 16 19 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 20 C -0.30 -8.52 10.16 -14.94 -0.15 -8.67 16 21 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 24 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 28 C 0.05 0.52 6.15 -2.29 -0.01 0.50 16 29 N -0.52 -1.92 6.02 -6.96 -0.04 -1.96 16 30 H 0.42 0.55 8.15 -40.82 -0.33 0.21 16 31 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.40 1.24 7.44 -40.82 -0.30 0.94 16 34 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 40 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 41 H 0.09 1.25 8.07 -51.93 -0.42 0.84 16 42 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.05 0.45 7.70 -51.93 -0.40 0.05 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -36.16 388.67 -7.82 -43.98 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.84 Total: 6.79 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -3.29 Total: 5.51 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.01 Total: -56.27 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.29 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.16 -7.82 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317517607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.411 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds