Wall clock time and date at job start Wed Apr 1 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48494 * 109.47059 * 239.99829 * 3 2 1 5 5 H 1.48496 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 120.00012 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00094 * 186.53630 * 9 7 2 11 11 C 1.52998 * 110.54249 * 58.61966 * 10 9 7 12 12 N 1.46502 * 109.46917 * 57.61629 * 11 10 9 13 13 C 1.34779 * 120.00128 * 175.54330 * 12 11 10 14 14 O 1.21557 * 119.99921 * 0.02562 * 13 12 11 15 15 C 1.47850 * 120.00011 * 180.02562 * 13 12 11 16 16 C 1.39715 * 119.43473 * 179.72707 * 15 13 12 17 17 C 1.37000 * 119.58925 * 179.72501 * 16 15 13 18 18 C 1.39897 * 118.37056 * 0.57526 * 17 16 15 19 19 N 1.35422 * 133.68400 * 179.69673 * 18 17 16 20 20 C 1.30938 * 109.56385 * 179.97438 * 19 18 17 21 21 O 1.35181 * 124.99196 * 180.02562 * 20 19 18 22 22 N 1.36384 * 110.00645 * 359.97438 * 20 19 18 23 23 H 0.97004 * 126.31783 * 179.97438 * 22 20 19 24 24 C 1.38248 * 107.36277 * 0.02562 * 22 20 19 25 25 N 1.31765 * 133.71754 * 179.97438 * 24 22 20 26 26 C 1.54896 * 110.48399 * 296.00869 * 10 9 7 27 27 C 1.54885 * 102.74681 * 279.26366 * 26 10 9 28 28 C 1.54268 * 104.19794 * 322.05817 * 27 26 10 29 29 C 1.53873 * 106.59729 * 23.61146 * 28 27 26 30 30 H 0.96996 * 119.99889 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99516 * 6.53160 * 9 7 2 32 32 H 1.08994 * 109.47636 * 177.61646 * 11 10 9 33 33 H 1.09001 * 109.47425 * 297.62329 * 11 10 9 34 34 H 0.97001 * 120.00062 * 355.53895 * 12 11 10 35 35 H 1.08000 * 120.21126 * 0.02562 * 16 15 13 36 36 H 1.08006 * 120.81823 * 180.23938 * 17 16 15 37 37 H 0.96706 * 113.99632 * 89.98366 * 21 20 19 38 38 H 1.08993 * 110.75434 * 37.58071 * 26 10 9 39 39 H 1.09002 * 110.75359 * 160.95362 * 26 10 9 40 40 H 1.09006 * 110.48728 * 203.38295 * 27 26 10 41 41 H 1.09003 * 110.48825 * 80.74181 * 27 26 10 42 42 H 1.09003 * 110.03115 * 264.32554 * 28 27 26 43 43 H 1.09004 * 110.03015 * 142.89304 * 28 27 26 44 44 H 1.08999 * 110.03144 * 240.71244 * 29 28 27 45 45 H 1.09000 * 110.03138 * 119.28619 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0509 -3.6527 0.1455 11 6 2.8396 -3.6720 1.4564 12 7 1.9234 -3.4645 2.5806 13 6 2.3828 -3.5325 3.8458 14 8 3.5575 -3.7655 4.0541 15 6 1.4581 -3.3238 4.9804 16 6 1.9459 -3.4026 6.2872 17 6 1.0929 -3.2040 7.3408 18 6 -0.2528 -2.9387 7.0657 19 7 -1.3378 -2.7054 7.8418 20 6 -2.3861 -2.5087 7.0822 21 8 -3.6332 -2.2484 7.5344 22 7 -2.0345 -2.6040 5.7679 23 1 -2.6258 -2.4996 5.0060 24 6 -0.6802 -2.8778 5.7220 25 7 0.1773 -3.0693 4.7400 26 6 2.9975 -3.8759 -1.0600 27 6 2.0414 -4.4237 -2.1485 28 6 1.0682 -5.3355 -1.3731 29 6 1.0742 -4.8452 0.0855 30 1 -0.4850 0.8400 0.0004 31 1 0.3603 -2.3908 -0.0954 32 1 3.3377 -4.6351 1.5667 33 1 3.5849 -2.8767 1.4438 34 1 0.9861 -3.2782 2.4144 35 1 2.9898 -3.6138 6.4658 36 1 1.4495 -3.2566 8.3589 37 1 -3.8213 -1.3068 7.6494 38 1 3.4463 -2.9349 -1.3781 39 1 3.7664 -4.6092 -0.8167 40 1 2.5964 -5.0002 -2.8887 41 1 1.5003 -3.6073 -2.6269 42 1 1.4078 -6.3702 -1.4206 43 1 0.0649 -5.2517 -1.7910 44 1 1.4167 -5.6420 0.7458 45 1 0.0739 -4.5236 0.3754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:19 Heat of formation + Delta-G solvation = 24.286053 kcal Electronic energy + Delta-G solvation = -30295.100265 eV Core-core repulsion = 26121.077743 eV Total energy + Delta-G solvation = -4174.022523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -42.57534 -39.87570 -38.76176 -38.02248 -36.93235 -34.26987 -33.86199 -33.26020 -31.51136 -30.64427 -29.71753 -28.23161 -27.86203 -25.11115 -24.03765 -23.50669 -22.99614 -21.99498 -20.67300 -19.88990 -19.47255 -18.89481 -18.17902 -17.64535 -17.40030 -16.94943 -16.24814 -15.79311 -15.28555 -15.11994 -14.92351 -14.60125 -14.42142 -14.23270 -13.80519 -13.45694 -13.39565 -13.24861 -12.89521 -12.60111 -12.44249 -12.30085 -11.77973 -11.48678 -11.36302 -11.24662 -11.10031 -10.83142 -10.75218 -10.64679 -10.52482 -10.31229 -10.01572 -9.97504 -9.83863 -9.66170 -9.32413 -9.14268 -8.90608 -8.68049 -8.37409 -7.02284 -5.82023 -3.10863 0.26022 1.06651 1.81201 2.20975 3.01624 3.24309 3.40996 3.45305 3.47216 3.55214 3.91046 4.04322 4.40426 4.55096 4.63261 4.88712 4.97849 5.14352 5.17166 5.24555 5.43243 5.55376 5.56218 5.66902 5.77879 5.81037 5.90929 5.94590 5.98544 6.15228 6.21698 6.23463 6.27440 6.34751 6.37284 6.45965 6.55564 6.63966 6.79278 6.81753 6.97010 7.04906 7.13080 7.30004 7.54439 7.68896 8.07491 8.36550 8.60443 9.48541 10.02716 10.38403 11.39862 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.003485 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.211052 B = 8032.639558 C = 8951.991629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.707 5.707 10 C 0.189 3.811 11 C 0.116 3.884 12 N -0.675 5.675 13 C 0.565 3.435 14 O -0.545 6.545 15 C 0.131 3.869 16 C -0.121 4.121 17 C -0.030 4.030 18 C 0.031 3.969 19 N -0.481 5.481 20 C 0.472 3.528 21 O -0.438 6.438 22 N -0.584 5.584 23 H 0.432 0.568 24 C 0.250 3.750 25 N -0.441 5.441 26 C -0.130 4.130 27 C -0.113 4.113 28 C -0.118 4.118 29 C -0.124 4.124 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.415 0.585 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.415 0.585 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -8.299 10.100 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.348 5.348 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.324 5.324 13 C 0.348 3.652 14 O -0.424 6.424 15 C -0.018 4.018 16 C -0.145 4.145 17 C -0.057 4.057 18 C -0.091 4.091 19 N -0.213 5.213 20 C 0.167 3.833 21 O -0.240 6.240 22 N -0.211 5.211 23 H 0.273 0.727 24 C 0.012 3.988 25 N -0.157 5.157 26 C -0.171 4.171 27 C -0.151 4.151 28 C -0.156 4.156 29 C -0.162 4.162 30 H 0.063 0.937 31 H 0.219 0.781 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.252 0.748 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.274 0.726 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.357 -8.810 10.310 13.971 hybrid contribution -0.687 1.821 -0.533 2.017 sum -4.044 -6.990 9.777 12.680 Atomic orbital electron populations 1.69646 1.05008 1.25588 1.57618 1.24672 0.95382 0.97438 1.02817 0.86375 0.78657 0.83903 0.77922 1.21249 1.21882 1.21330 1.19045 0.90972 0.83802 1.42558 0.91272 1.42390 1.06280 0.99410 1.86746 1.20631 0.91438 0.87260 0.91066 1.21938 0.92711 1.00229 0.86070 1.45675 1.14466 1.67849 1.04367 1.17627 0.86501 0.78351 0.82715 1.90765 1.16001 1.50653 1.84947 1.21111 0.88344 0.98147 0.94195 1.21603 1.02113 0.99711 0.91038 1.20420 0.88693 0.96000 1.00592 1.19652 0.94432 1.05170 0.89861 1.70622 0.96457 1.23155 1.31094 1.20191 0.86415 0.98015 0.78696 1.84811 1.22445 1.32475 1.84297 1.43054 1.07607 1.60981 1.09446 0.72678 1.18453 0.84921 1.03657 0.91725 1.66250 1.02069 1.12361 1.35016 1.22881 0.97268 1.00590 0.96342 1.22194 0.97079 0.98520 0.97264 1.22056 0.99482 0.98473 0.95589 1.22380 0.99946 0.97388 0.96476 0.93655 0.78068 0.92325 0.91315 0.74808 0.82281 0.83202 0.72557 0.90707 0.92759 0.93051 0.91214 0.92784 0.92480 0.91972 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.42 13.07 55.49 0.73 -25.70 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.23 -5.93 8.59 -15.06 -0.13 -6.06 16 8 H 0.07 1.76 7.13 -52.49 -0.37 1.39 16 9 N -0.71 -15.71 4.70 -45.70 -0.21 -15.92 16 10 C 0.19 3.39 0.52 -130.16 -0.07 3.32 16 11 C 0.12 2.12 4.29 -4.04 -0.02 2.11 16 12 N -0.67 -12.35 5.23 -61.25 -0.32 -12.67 16 13 C 0.56 10.25 7.80 -12.33 -0.10 10.15 16 14 O -0.55 -10.78 16.29 5.32 0.09 -10.69 16 15 C 0.13 2.10 6.74 -82.98 -0.56 1.54 16 16 C -0.12 -1.60 9.55 -39.48 -0.38 -1.98 16 17 C -0.03 -0.35 10.16 -39.41 -0.40 -0.75 16 18 C 0.03 0.42 7.24 -84.56 -0.61 -0.19 16 19 N -0.48 -6.34 11.30 -12.11 -0.14 -6.48 16 20 C 0.47 5.14 9.39 -88.77 -0.83 4.30 16 21 O -0.44 -3.25 13.62 -17.24 -0.23 -3.48 16 22 N -0.58 -6.62 6.25 -13.33 -0.08 -6.70 16 23 H 0.43 3.92 8.96 -40.82 -0.37 3.56 16 24 C 0.25 3.62 8.46 -155.52 -1.32 2.31 16 25 N -0.44 -7.12 9.54 -8.78 -0.08 -7.20 16 26 C -0.13 -2.20 5.90 -24.74 -0.15 -2.34 16 27 C -0.11 -1.74 6.79 -25.07 -0.17 -1.91 16 28 C -0.12 -1.68 6.80 -25.61 -0.17 -1.85 16 29 C -0.12 -1.91 5.70 -25.62 -0.15 -2.06 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.38 9.26 7.50 -40.82 -0.31 8.95 16 32 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.07 1.41 7.52 -51.93 -0.39 1.02 16 34 H 0.41 7.82 7.37 -40.82 -0.30 7.52 16 35 H 0.16 1.86 7.61 -52.49 -0.40 1.46 16 36 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.41 0.82 9.06 45.56 0.41 1.24 16 38 H 0.07 1.41 7.19 -51.93 -0.37 1.04 16 39 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.89 7.80 -51.93 -0.40 0.48 16 45 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -32.55 377.26 -9.73 -42.28 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -4.99 Total: 17.66 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -5.14 Total: 6.30 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -0.11 Total: -74.68 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.15 Total: -14.17 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.55 -9.73 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.570 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds