Wall clock time and date at job start Wed Apr 1 2020 03:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30288 * 124.97411 * 2 1 4 4 C 1.34654 * 109.66601 * 179.97438 * 3 2 1 5 5 C 1.40826 * 107.26666 * 359.97438 * 4 3 2 6 6 N 1.32106 * 120.46151 * 179.97438 * 5 4 3 7 7 C 1.31727 * 121.95229 * 0.02562 * 6 5 4 8 8 C 1.38334 * 121.54615 * 359.70828 * 7 6 5 9 9 C 1.39643 * 119.37305 * 0.57270 * 8 7 6 10 10 C 1.47762 * 121.07354 * 179.72754 * 9 8 7 11 11 O 1.21554 * 120.00130 * 179.71602 * 10 9 8 12 12 N 1.34779 * 119.99811 * 359.71422 * 10 9 8 13 13 C 1.46506 * 119.99895 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46858 * 180.02562 * 13 12 10 15 15 H 1.08996 * 110.64067 * 303.30523 * 14 13 12 16 16 C 1.54320 * 110.72234 * 66.45360 * 14 13 12 17 17 N 1.47029 * 107.27322 * 140.73520 * 16 14 13 18 18 C 1.36933 * 125.64936 * 181.02206 * 17 16 14 19 19 H 1.08003 * 119.99721 * 13.63215 * 18 17 16 20 20 C 1.38816 * 119.99961 * 193.62770 * 18 17 16 21 21 N 1.31616 * 119.99775 * 27.26821 * 20 18 17 22 22 Si 1.86796 * 119.99890 * 207.26642 * 20 18 17 23 23 H 1.48502 * 109.47389 * 60.00434 * 22 20 18 24 24 H 1.48499 * 109.47223 * 300.00034 * 22 20 18 25 25 H 1.48500 * 109.47095 * 180.02562 * 22 20 18 26 26 C 1.47425 * 108.70123 * 1.28326 * 17 16 14 27 27 C 1.55140 * 104.72236 * 335.55406 * 26 17 16 28 28 H 1.08998 * 111.19212 * 279.19468 * 27 26 17 29 29 O 1.42894 * 110.93636 * 155.28796 * 27 26 17 30 30 N 1.35985 * 124.97067 * 179.97438 * 2 1 3 31 31 H 0.96996 * 126.36067 * 359.97438 * 30 2 1 32 32 H 1.09004 * 109.47044 * 270.02632 * 1 2 3 33 33 H 1.09000 * 109.46982 * 30.02595 * 1 2 3 34 34 H 1.09000 * 109.47174 * 150.02412 * 1 2 3 35 35 H 1.07997 * 119.22365 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.31620 * 180.29186 * 8 7 6 37 37 H 0.96998 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47451 * 59.99349 * 13 12 10 39 39 H 1.09004 * 109.46573 * 299.99734 * 13 12 10 40 40 H 1.08996 * 109.88396 * 21.31395 * 16 14 13 41 41 H 1.09003 * 110.01118 * 260.21543 * 16 14 13 42 42 H 0.97006 * 120.00147 * 5.85176 * 21 20 18 43 43 H 1.08995 * 110.36729 * 94.48746 * 26 17 16 44 44 H 1.08999 * 110.36759 * 216.81246 * 26 17 16 45 45 H 0.96701 * 114.00090 * 67.96154 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2538 1.0676 0.0000 4 6 3.5526 0.7121 0.0006 5 6 3.6007 -0.6953 0.0015 6 7 4.7616 -1.3258 0.0018 7 6 5.9076 -0.6762 0.0016 8 6 5.9560 0.7063 -0.0049 9 6 4.7637 1.4333 0.0009 10 6 4.7715 2.9109 0.0003 11 8 3.7221 3.5243 0.0001 12 7 5.9423 3.5786 0.0001 13 6 5.9501 5.0437 0.0001 14 6 7.3953 5.5459 -0.0008 15 1 7.9426 5.1430 0.8513 16 6 8.0994 5.1806 -1.3245 17 7 8.9411 6.3256 -1.7017 18 6 9.7165 6.4096 -2.8273 19 1 9.5816 5.6999 -3.6301 20 6 10.6757 7.4071 -2.9364 21 7 11.2254 7.9128 -1.8528 22 14 11.1862 8.0315 -4.6213 23 1 10.0028 8.5939 -5.3203 24 1 11.7440 6.9088 -5.4172 25 1 12.2181 9.0880 -4.4659 26 6 8.8170 7.3656 -0.6643 27 6 7.4414 7.0969 0.0008 28 1 6.6281 7.5125 -0.5941 29 8 7.4103 7.6088 1.3345 30 7 2.2864 -1.1143 0.0005 31 1 1.9759 -2.0333 0.0013 32 1 -0.3633 0.0005 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 6.8311 -1.2362 0.0022 36 1 6.9067 1.2185 -0.0096 37 1 6.7798 3.0892 0.0006 38 1 5.4383 5.4097 0.8901 39 1 5.4380 5.4097 -0.8898 40 1 7.3569 4.9947 -2.1004 41 1 8.7194 4.2949 -1.1851 42 1 11.0242 7.5316 -0.9837 43 1 9.6196 7.2699 0.0668 44 1 8.8315 8.3569 -1.1173 45 1 7.4373 8.5741 1.3860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958273181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:49 Heat of formation + Delta-G solvation = 31.400727 kcal Electronic energy + Delta-G solvation = -29439.492679 eV Core-core repulsion = 25265.778671 eV Total energy + Delta-G solvation = -4173.714007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.78060 -39.87643 -38.68009 -38.20829 -35.35542 -34.83014 -34.00407 -32.56618 -31.88863 -31.63570 -29.56382 -28.47360 -27.79929 -25.64976 -24.41444 -23.58353 -22.94223 -21.47725 -21.03906 -20.34057 -20.02509 -18.68598 -17.88995 -17.66028 -17.36723 -16.96420 -16.29903 -15.79442 -15.44418 -15.28908 -14.87602 -14.59939 -14.37593 -13.94880 -13.87717 -13.79118 -13.65909 -13.55675 -13.23730 -13.01698 -12.70749 -12.47891 -12.44405 -12.21533 -11.98540 -11.40717 -11.19779 -11.15696 -10.91901 -10.74368 -10.56213 -10.29958 -10.04987 -10.00102 -9.75329 -9.45698 -9.32786 -9.28690 -8.99325 -8.72746 -8.47732 -7.03446 -6.14698 -3.18866 0.07828 0.80103 2.09442 2.37205 2.82678 3.00970 3.47647 3.51938 3.59246 3.63639 3.69588 4.02482 4.27112 4.37103 4.44089 4.50672 4.59297 4.71195 4.81166 4.93193 4.97429 5.06328 5.18584 5.25097 5.31584 5.35487 5.43083 5.54343 5.56069 5.66553 5.71938 5.80374 5.91034 6.06547 6.17629 6.20193 6.38496 6.48597 6.65909 6.70106 6.81476 6.91190 7.41452 7.46215 7.49502 7.68824 7.96852 8.20001 8.41870 8.95171 9.75360 10.27370 11.18384 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002242 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.077876 B =12486.910310 C =13158.584406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.296 3.704 3 N -0.459 5.459 4 C 0.058 3.942 5 C 0.232 3.768 6 N -0.468 5.468 7 C 0.132 3.868 8 C -0.147 4.147 9 C -0.034 4.034 10 C 0.552 3.448 11 O -0.505 6.505 12 N -0.719 5.719 13 C 0.136 3.864 14 C -0.105 4.105 15 H 0.088 0.912 16 C 0.141 3.859 17 N -0.601 5.601 18 C -0.338 4.338 19 H 0.068 0.932 20 C -0.025 4.025 21 N -0.919 5.919 22 Si 1.065 2.935 23 H -0.293 1.293 24 H -0.293 1.293 25 H -0.285 1.285 26 C 0.120 3.880 27 C 0.091 3.909 28 H 0.066 0.934 29 O -0.565 6.565 30 N -0.586 5.586 31 H 0.428 0.572 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.400 0.600 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.026 0.974 42 H 0.269 0.731 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 -17.920 6.390 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 N -0.178 5.178 4 C -0.066 4.066 5 C -0.005 4.005 6 N -0.181 5.181 7 C -0.034 4.034 8 C -0.170 4.170 9 C -0.047 4.047 10 C 0.337 3.663 11 O -0.379 6.379 12 N -0.372 5.372 13 C 0.012 3.988 14 C -0.124 4.124 15 H 0.107 0.893 16 C 0.015 3.985 17 N -0.329 5.329 18 C -0.466 4.466 19 H 0.086 0.914 20 C -0.227 4.227 21 N -0.560 5.560 22 Si 0.894 3.106 23 H -0.221 1.221 24 H -0.220 1.220 25 H -0.210 1.210 26 C -0.007 4.007 27 C 0.030 3.970 28 H 0.084 0.916 29 O -0.370 6.370 30 N -0.202 5.202 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.192 0.808 36 H 0.169 0.831 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.664 -16.971 5.643 25.137 hybrid contribution -0.121 -1.382 0.594 1.509 sum -17.785 -18.353 6.237 26.306 Atomic orbital electron populations 1.20452 0.83254 1.05185 1.04694 1.23995 0.96125 0.80178 0.96801 1.70360 1.00413 1.26694 1.20369 1.19221 0.92317 0.90921 1.04152 1.18894 0.86233 0.90856 1.04498 1.66196 0.96069 1.41540 1.14307 1.22524 0.94253 0.91293 0.95299 1.22257 0.97984 0.95691 1.01028 1.19692 0.90837 0.93824 1.00337 1.17908 0.84249 0.86221 0.77943 1.90847 1.31058 1.68677 1.47354 1.45912 1.08122 1.07986 1.75169 1.21406 0.96570 0.78168 1.02609 1.22404 0.94715 0.95296 0.99979 0.89325 1.21396 0.93271 0.91768 0.92029 1.44387 1.52378 1.12211 1.23917 1.19763 1.15663 1.18195 0.92937 0.91371 1.25754 0.94053 0.97933 1.04952 1.70800 1.39801 1.45870 0.99537 0.83528 0.75999 0.76482 0.74584 1.22073 1.21973 1.21042 1.22218 0.92809 0.94134 0.91499 1.23096 0.98435 0.92690 0.82730 0.91561 1.86411 1.97262 1.26132 1.27201 1.42760 1.03565 1.10568 1.63265 0.73207 0.88860 0.87893 0.89827 0.80811 0.83123 0.76465 0.90882 0.91030 0.95003 0.95575 0.91902 0.94642 0.92604 0.77515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.30 2.81 8.08 -154.73 -1.25 1.56 16 3 N -0.46 -6.56 10.63 -8.07 -0.09 -6.65 16 4 C 0.06 0.82 6.85 -84.62 -0.58 0.24 16 5 C 0.23 2.76 8.46 -155.65 -1.32 1.45 16 6 N -0.47 -5.18 10.35 -12.30 -0.13 -5.31 16 7 C 0.13 1.18 11.14 -17.56 -0.20 0.99 16 8 C -0.15 -1.42 9.60 -39.02 -0.37 -1.80 16 9 C -0.03 -0.46 5.93 -104.45 -0.62 -1.08 16 10 C 0.55 8.57 7.79 -12.37 -0.10 8.47 16 11 O -0.51 -9.72 16.19 5.32 0.09 -9.64 16 12 N -0.72 -9.78 5.36 -61.28 -0.33 -10.11 16 13 C 0.14 2.07 5.01 -4.04 -0.02 2.05 16 14 C -0.10 -1.75 2.74 -88.79 -0.24 -1.99 16 15 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 16 C 0.14 2.79 6.52 -3.06 -0.02 2.77 16 17 N -0.60 -14.88 3.33 -169.93 -0.57 -15.44 16 18 C -0.34 -9.40 10.05 -15.06 -0.15 -9.55 16 19 H 0.07 1.88 7.96 -52.48 -0.42 1.47 16 20 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 21 N -0.92 -27.38 12.82 55.49 0.71 -26.67 16 22 Si 1.06 25.08 30.00 -169.99 -5.10 19.98 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 C 0.12 2.71 4.96 -2.40 -0.01 2.70 16 27 C 0.09 1.63 3.90 -24.45 -0.10 1.53 16 28 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 29 O -0.57 -9.16 13.47 -35.23 -0.47 -9.64 16 30 N -0.59 -5.00 6.23 -9.43 -0.06 -5.06 16 31 H 0.43 2.04 8.96 -40.82 -0.37 1.67 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.15 1.04 6.53 -52.49 -0.34 0.69 16 37 H 0.40 4.45 6.47 -40.82 -0.26 4.19 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.16 8.06 -51.93 -0.42 0.75 16 40 H 0.03 0.64 7.77 -51.93 -0.40 0.23 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.27 8.03 5.83 -40.82 -0.24 7.79 16 43 H 0.04 0.87 6.84 -51.93 -0.36 0.52 16 44 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 45 H 0.38 4.62 9.12 45.56 0.42 5.03 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -39.22 376.54 -9.92 -49.13 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.96 Total: 7.17 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -4.69 Total: 6.56 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -0.45 Total: -69.24 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.39 Total: -19.27 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.22 -9.92 -49.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958273181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.533 kcal (2) G-P(sol) polarization free energy of solvation -39.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds