Wall clock time and date at job start Wed Apr 1 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30288 * 124.97411 * 2 1 4 4 C 1.34654 * 109.66601 * 179.97438 * 3 2 1 5 5 C 1.40826 * 107.26666 * 359.97438 * 4 3 2 6 6 N 1.32106 * 120.46151 * 179.97438 * 5 4 3 7 7 C 1.31727 * 121.95229 * 0.02562 * 6 5 4 8 8 C 1.38334 * 121.54615 * 359.70828 * 7 6 5 9 9 C 1.39643 * 119.37305 * 0.57270 * 8 7 6 10 10 C 1.47762 * 121.07354 * 179.72754 * 9 8 7 11 11 O 1.21554 * 120.00130 * 179.71602 * 10 9 8 12 12 N 1.34779 * 119.99811 * 359.71422 * 10 9 8 13 13 C 1.46506 * 119.99895 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46858 * 180.02562 * 13 12 10 15 15 H 1.08996 * 110.64067 * 303.30523 * 14 13 12 16 16 C 1.54320 * 110.72234 * 66.45360 * 14 13 12 17 17 N 1.47029 * 107.27322 * 140.73520 * 16 14 13 18 18 C 1.36933 * 125.64936 * 181.02206 * 17 16 14 19 19 H 1.08003 * 119.99721 * 13.63215 * 18 17 16 20 20 C 1.38816 * 119.99961 * 193.62770 * 18 17 16 21 21 N 1.31616 * 119.99775 * 27.26821 * 20 18 17 22 22 Si 1.86796 * 119.99890 * 207.26642 * 20 18 17 23 23 H 1.48502 * 109.47389 * 60.00434 * 22 20 18 24 24 H 1.48499 * 109.47223 * 300.00034 * 22 20 18 25 25 H 1.48500 * 109.47095 * 180.02562 * 22 20 18 26 26 C 1.47425 * 108.70123 * 1.28326 * 17 16 14 27 27 C 1.55140 * 104.72236 * 335.55406 * 26 17 16 28 28 H 1.08998 * 111.19212 * 279.19468 * 27 26 17 29 29 O 1.42894 * 110.93636 * 155.28796 * 27 26 17 30 30 N 1.35985 * 124.97067 * 179.97438 * 2 1 3 31 31 H 0.96996 * 126.36067 * 359.97438 * 30 2 1 32 32 H 1.09004 * 109.47044 * 270.02632 * 1 2 3 33 33 H 1.09000 * 109.46982 * 30.02595 * 1 2 3 34 34 H 1.09000 * 109.47174 * 150.02412 * 1 2 3 35 35 H 1.07997 * 119.22365 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.31620 * 180.29186 * 8 7 6 37 37 H 0.96998 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47451 * 59.99349 * 13 12 10 39 39 H 1.09004 * 109.46573 * 299.99734 * 13 12 10 40 40 H 1.08996 * 109.88396 * 21.31395 * 16 14 13 41 41 H 1.09003 * 110.01118 * 260.21543 * 16 14 13 42 42 H 0.97006 * 120.00147 * 5.85176 * 21 20 18 43 43 H 1.08995 * 110.36729 * 94.48746 * 26 17 16 44 44 H 1.08999 * 110.36759 * 216.81246 * 26 17 16 45 45 H 0.96701 * 114.00090 * 67.96154 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2538 1.0676 0.0000 4 6 3.5526 0.7121 0.0006 5 6 3.6007 -0.6953 0.0015 6 7 4.7616 -1.3258 0.0018 7 6 5.9076 -0.6762 0.0016 8 6 5.9560 0.7063 -0.0049 9 6 4.7637 1.4333 0.0009 10 6 4.7715 2.9109 0.0003 11 8 3.7221 3.5243 0.0001 12 7 5.9423 3.5786 0.0001 13 6 5.9501 5.0437 0.0001 14 6 7.3953 5.5459 -0.0008 15 1 7.9426 5.1430 0.8513 16 6 8.0994 5.1806 -1.3245 17 7 8.9411 6.3256 -1.7017 18 6 9.7165 6.4096 -2.8273 19 1 9.5816 5.6999 -3.6301 20 6 10.6757 7.4071 -2.9364 21 7 11.2254 7.9128 -1.8528 22 14 11.1862 8.0315 -4.6213 23 1 10.0028 8.5939 -5.3203 24 1 11.7440 6.9088 -5.4172 25 1 12.2181 9.0880 -4.4659 26 6 8.8170 7.3656 -0.6643 27 6 7.4414 7.0969 0.0008 28 1 6.6281 7.5125 -0.5941 29 8 7.4103 7.6088 1.3345 30 7 2.2864 -1.1143 0.0005 31 1 1.9759 -2.0333 0.0013 32 1 -0.3633 0.0005 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 6.8311 -1.2362 0.0022 36 1 6.9067 1.2185 -0.0096 37 1 6.7798 3.0892 0.0006 38 1 5.4383 5.4097 0.8901 39 1 5.4380 5.4097 -0.8898 40 1 7.3569 4.9947 -2.1004 41 1 8.7194 4.2949 -1.1851 42 1 11.0242 7.5316 -0.9837 43 1 9.6196 7.2699 0.0668 44 1 8.8315 8.3569 -1.1173 45 1 7.4373 8.5741 1.3860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958273181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:48 Heat of formation + Delta-G solvation = -0.271920 kcal Electronic energy + Delta-G solvation = -29440.866108 eV Core-core repulsion = 25265.778671 eV Total energy + Delta-G solvation = -4175.087436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.55414 -41.05018 -39.99504 -39.25351 -36.83775 -36.30008 -34.87307 -34.19110 -32.68820 -32.46602 -31.14849 -29.53268 -29.10727 -27.20308 -25.82464 -24.69677 -23.92857 -22.49524 -22.18095 -21.76222 -21.43649 -19.79166 -19.50576 -18.70113 -18.39106 -18.25970 -17.11761 -16.95899 -16.62095 -16.49553 -16.14779 -15.85442 -15.64072 -15.50318 -15.34420 -14.90914 -14.60259 -14.48311 -14.36249 -14.03524 -13.94317 -13.80894 -13.60972 -13.22272 -13.02259 -12.77934 -12.62860 -12.41733 -12.34730 -12.23170 -12.00056 -11.90016 -11.74354 -11.60920 -11.32260 -10.97153 -10.55012 -10.32146 -10.29365 -10.00463 -9.53077 -9.06787 -8.33989 -5.34500 -0.77236 0.02700 1.42926 1.55569 1.58305 1.65829 1.82718 1.84721 1.89511 2.61207 2.74242 2.93469 3.01372 3.21143 3.29189 3.45626 3.50089 3.59211 3.61876 3.75381 3.82862 3.96010 4.03459 4.24408 4.26835 4.32675 4.44124 4.50264 4.60916 4.68130 4.68571 4.79027 4.82350 4.84144 4.92876 4.96368 5.09390 5.10331 5.15717 5.28399 5.45045 5.62809 6.11353 6.28454 6.38746 6.67603 6.73345 6.76837 6.86516 7.07615 7.67071 8.23032 8.98898 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002242 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.077876 B =12486.910310 C =13158.584406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.307 3.693 3 N -0.520 5.520 4 C 0.026 3.974 5 C 0.217 3.783 6 N -0.473 5.473 7 C 0.134 3.866 8 C -0.128 4.128 9 C -0.068 4.068 10 C 0.553 3.447 11 O -0.552 6.552 12 N -0.707 5.707 13 C 0.149 3.851 14 C -0.086 4.086 15 H 0.097 0.903 16 C 0.140 3.860 17 N -0.624 5.624 18 C -0.346 4.346 19 H 0.066 0.934 20 C -0.078 4.078 21 N -0.947 5.947 22 Si 1.115 2.885 23 H -0.282 1.282 24 H -0.273 1.273 25 H -0.292 1.292 26 C 0.125 3.875 27 C 0.107 3.893 28 H 0.076 0.924 29 O -0.565 6.565 30 N -0.571 5.571 31 H 0.445 0.555 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.217 0.783 36 H 0.180 0.820 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.257 0.743 43 H 0.013 0.987 44 H 0.027 0.973 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.170 -20.137 6.290 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.040 3.960 3 N -0.241 5.241 4 C -0.098 4.098 5 C -0.020 4.020 6 N -0.186 5.186 7 C -0.032 4.032 8 C -0.151 4.151 9 C -0.081 4.081 10 C 0.340 3.660 11 O -0.430 6.430 12 N -0.360 5.360 13 C 0.025 3.975 14 C -0.105 4.105 15 H 0.116 0.884 16 C 0.015 3.985 17 N -0.352 5.352 18 C -0.474 4.474 19 H 0.084 0.916 20 C -0.274 4.274 21 N -0.591 5.591 22 Si 0.939 3.061 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.218 1.218 26 C -0.001 4.001 27 C 0.046 3.954 28 H 0.094 0.906 29 O -0.372 6.372 30 N -0.188 5.188 31 H 0.289 0.711 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.233 0.767 36 H 0.197 0.803 37 H 0.251 0.749 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.045 0.955 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -18.311 -19.250 5.557 27.143 hybrid contribution 0.052 -0.767 0.666 1.017 sum -18.259 -20.017 6.223 27.799 Atomic orbital electron populations 1.20707 0.79861 1.06580 1.06192 1.24834 0.97657 0.79471 0.94019 1.70319 1.01204 1.29226 1.23372 1.19597 0.92708 0.92336 1.05115 1.19106 0.87458 0.90277 1.05165 1.66332 0.96331 1.41715 1.14245 1.23274 0.95047 0.91282 0.93622 1.22611 0.97756 0.96139 0.98558 1.19715 0.92311 0.92593 1.03525 1.18271 0.83752 0.87251 0.76757 1.90810 1.32645 1.69806 1.49714 1.45747 1.08459 1.07305 1.74539 1.21147 0.95061 0.79139 1.02175 1.22225 0.95310 0.94444 0.98559 0.88449 1.21526 0.92822 0.90624 0.93527 1.44642 1.52318 1.14469 1.23809 1.20037 1.15472 1.17958 0.93949 0.91623 1.27103 0.94507 0.98442 1.07366 1.70908 1.41593 1.46963 0.99588 0.82854 0.75865 0.76295 0.71073 1.20835 1.19896 1.21821 1.22112 0.94971 0.92404 0.90635 1.22819 0.95583 0.93662 0.83292 0.90575 1.86385 1.96955 1.28088 1.25760 1.42743 1.02392 1.11379 1.62281 0.71121 0.87103 0.88484 0.86347 0.76670 0.80287 0.74882 0.90875 0.92016 0.94805 0.94576 0.93257 0.96952 0.95497 0.75383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.51 71.24 0.75 0.20 16 2 C 0.31 5.64 8.08 137.89 1.11 6.75 16 3 N -0.52 -15.26 10.63 -179.46 -1.91 -17.17 16 4 C 0.03 0.76 6.85 40.01 0.27 1.03 16 5 C 0.22 4.99 8.46 133.93 1.13 6.12 16 6 N -0.47 -9.58 10.35 -192.84 -2.00 -11.58 16 7 C 0.13 2.03 11.14 84.73 0.94 2.97 16 8 C -0.13 -2.23 9.60 22.63 0.22 -2.01 16 9 C -0.07 -1.83 5.93 -19.75 -0.12 -1.95 16 10 C 0.55 17.26 7.79 86.76 0.68 17.94 16 11 O -0.55 -21.97 16.19 -3.88 -0.06 -22.03 16 12 N -0.71 -18.50 5.36 -466.05 -2.50 -20.99 16 13 C 0.15 4.37 5.01 86.38 0.43 4.81 16 14 C -0.09 -2.77 2.74 -9.61 -0.03 -2.79 16 15 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 16 C 0.14 5.40 6.52 86.73 0.57 5.96 16 17 N -0.62 -31.06 3.33 -691.52 -2.30 -33.36 16 18 C -0.35 -19.33 10.05 84.03 0.84 -18.48 16 19 H 0.07 3.62 7.96 -2.91 -0.02 3.59 16 20 C -0.08 -4.46 5.09 84.86 0.43 -4.03 16 21 N -0.95 -57.70 12.82 21.65 0.28 -57.42 16 22 Si 1.11 50.72 30.00 68.60 2.06 52.78 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 C 0.13 5.77 4.96 86.94 0.43 6.20 16 27 C 0.11 3.76 3.90 32.07 0.12 3.89 16 28 H 0.08 2.56 8.05 -2.39 -0.02 2.54 16 29 O -0.56 -17.50 13.47 -148.98 -2.01 -19.51 16 30 N -0.57 -9.05 6.23 -183.76 -1.14 -10.19 16 31 H 0.45 3.37 8.96 -92.71 -0.83 2.54 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.22 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.18 1.89 6.53 -2.91 -0.02 1.87 16 37 H 0.41 8.36 6.47 -92.71 -0.60 7.76 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 40 H 0.03 1.31 7.77 -2.39 -0.02 1.29 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.26 15.82 5.83 -92.70 -0.54 15.28 16 43 H 0.01 0.64 6.84 -2.39 -0.02 0.63 16 44 H 0.03 1.36 7.73 -2.39 -0.02 1.35 16 45 H 0.40 9.14 9.12 -74.06 -0.68 8.46 16 Total: -1.00 -89.01 376.54 -2.58 -91.60 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.80 Total: 21.28 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 7.79 Total: 26.60 kcal Atomic # 7 Polarization: -141.15 SS G_CDS: -9.57 Total: -150.72 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -2.07 Total: -41.54 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.06 Total: 52.78 kcal Total: -89.01 -2.58 -91.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958273181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.327 kcal (2) G-P(sol) polarization free energy of solvation -89.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds