Wall clock time and date at job start Wed Apr 1 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38495 * 125.48203 * 2 1 4 4 C 1.39062 * 107.67499 * 179.97438 * 3 2 1 5 5 N 1.33701 * 132.56306 * 179.97438 * 4 3 2 6 6 C 1.31142 * 121.18712 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.76878 * 180.02562 * 6 5 4 8 8 C 1.40134 * 120.46118 * 359.97438 * 6 5 4 9 9 C 1.36883 * 119.26180 * 0.02760 * 8 6 5 10 10 C 1.47500 * 120.61123 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00560 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99901 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00074 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.08004 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99550 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47084 * 60.00066 * 21 19 17 23 23 H 1.48498 * 109.46831 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47190 * 299.99852 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09002 * 110.72265 * 219.52294 * 26 25 16 28 28 O 1.42895 * 110.72044 * 96.24103 * 26 25 16 29 29 N 1.37294 * 106.80155 * 0.23141 * 4 3 2 30 30 N 1.31528 * 125.47945 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47007 * 90.00866 * 1 2 3 32 32 H 1.09003 * 109.47193 * 210.00242 * 1 2 3 33 33 H 1.08994 * 109.47403 * 329.99977 * 1 2 3 34 34 H 1.08002 * 126.16223 * 359.97414 * 3 2 1 35 35 H 1.09000 * 109.46845 * 269.97463 * 7 6 5 36 36 H 1.09002 * 109.47145 * 29.97349 * 7 6 5 37 37 H 1.08997 * 109.47054 * 149.97876 * 7 6 5 38 38 H 1.08002 * 120.36924 * 180.02562 * 8 6 5 39 39 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 40 40 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 41 41 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 42 42 H 0.97004 * 119.99606 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 44 44 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 45 45 H 0.96706 * 113.99347 * 61.46045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7025 0.0006 5 7 4.7971 1.3635 0.0004 6 6 5.9420 0.7241 0.0006 7 6 7.2331 1.5013 0.0010 8 6 5.9733 -0.6769 0.0016 9 6 4.7944 -1.3725 0.0017 10 6 4.7925 -2.8475 0.0021 11 8 5.8447 -3.4568 0.0019 12 7 3.6245 -3.5199 0.0028 13 6 3.6226 -4.9850 0.0027 14 1 4.4309 -5.3751 0.6212 15 6 3.7104 -5.5401 -1.4409 16 7 3.1026 -6.8813 -1.3670 17 6 3.3509 -7.9184 -2.2261 18 1 4.0453 -7.7885 -3.0430 19 6 2.7102 -9.1367 -2.0469 20 7 1.8636 -9.2947 -1.0516 21 14 3.0484 -10.5512 -3.2191 22 1 4.4922 -10.8954 -3.1759 23 1 2.2449 -11.7325 -2.8141 24 1 2.6763 -10.1498 -4.5995 25 6 2.1853 -6.9206 -0.2188 26 6 2.2489 -5.5412 0.4702 27 1 2.2231 -5.6501 1.5545 28 8 1.1843 -4.7013 0.0196 29 7 3.6108 -0.6702 -0.0044 30 7 2.2704 -1.0711 0.0005 31 1 -0.3633 -0.0002 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.9708 2.1528 -0.0004 35 1 7.5448 1.6884 -1.0266 36 1 7.0851 2.4513 0.5144 37 1 8.0032 0.9263 0.5152 38 1 6.9171 -1.2020 0.0021 39 1 2.7850 -3.0339 0.0034 40 1 4.7511 -5.6121 -1.7571 41 1 3.1479 -4.9060 -2.1261 42 1 1.4156 -10.1460 -0.9265 43 1 1.1696 -7.1169 -0.5624 44 1 2.4974 -7.6980 0.4785 45 1 0.3020 -5.0450 0.2164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084068295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:27 Heat of formation + Delta-G solvation = 70.188450 kcal Electronic energy + Delta-G solvation = -30505.076525 eV Core-core repulsion = 26333.044480 eV Total energy + Delta-G solvation = -4172.032045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61070 -39.85963 -38.71624 -37.89623 -34.83904 -34.72498 -33.98832 -32.82797 -31.65727 -30.68798 -28.77535 -28.54766 -27.72955 -27.27024 -25.17737 -24.02151 -22.75348 -21.24206 -20.81251 -20.27979 -20.06781 -18.73067 -17.46714 -17.16046 -16.86282 -16.59985 -16.49269 -15.52665 -15.16355 -14.83364 -14.76504 -14.51992 -14.30545 -14.04307 -13.95103 -13.50450 -13.35601 -13.22166 -13.15505 -12.85185 -12.72768 -12.62419 -12.51164 -12.31155 -11.93248 -11.34456 -11.32825 -11.20188 -10.98506 -10.85279 -10.58236 -10.54131 -10.36425 -10.18288 -9.97803 -9.83154 -9.50564 -9.34469 -8.84223 -8.67497 -8.17140 -6.90621 -5.76967 -3.10187 -0.13005 0.56081 1.67459 2.17479 2.71960 2.87577 3.22261 3.39620 3.39932 3.43463 3.44903 3.75855 4.14218 4.46216 4.47972 4.57228 4.62767 4.88006 4.90981 5.13249 5.16940 5.25740 5.26024 5.29467 5.33757 5.39106 5.43662 5.50939 5.53810 5.65396 5.69087 5.78246 5.83183 5.98838 6.15425 6.17997 6.32995 6.45643 6.59881 6.84691 7.16692 7.29960 7.30777 7.41137 7.62067 7.71457 8.04962 8.17224 8.23098 9.15393 9.75244 10.39707 11.35254 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.002898 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.626014 B = 9659.443270 C =10914.706079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.121 3.879 3 C -0.258 4.258 4 C 0.262 3.738 5 N -0.456 5.456 6 C 0.202 3.798 7 C -0.106 4.106 8 C -0.156 4.156 9 C 0.154 3.846 10 C 0.550 3.450 11 O -0.519 6.519 12 N -0.682 5.682 13 C 0.134 3.866 14 H 0.105 0.895 15 C 0.133 3.867 16 N -0.599 5.599 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.926 5.926 21 Si 0.916 3.084 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 C 0.069 3.931 27 H 0.062 0.938 28 O -0.563 6.563 29 N -0.307 5.307 30 N -0.306 5.306 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.180 0.820 39 H 0.426 0.574 40 H 0.047 0.953 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 22.874 5.844 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.289 4.289 4 C 0.035 3.965 5 N -0.169 5.169 6 C 0.037 3.963 7 C -0.163 4.163 8 C -0.182 4.182 9 C 0.036 3.964 10 C 0.332 3.668 11 O -0.396 6.396 12 N -0.337 5.337 13 C 0.029 3.971 14 H 0.123 0.877 15 C 0.006 3.994 16 N -0.326 5.326 17 C -0.354 4.354 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.574 5.574 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.029 3.971 26 C 0.009 3.991 27 H 0.080 0.920 28 O -0.369 6.369 29 N -0.081 5.081 30 N -0.133 5.133 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.181 0.819 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.198 0.802 39 H 0.269 0.731 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.088 22.134 5.609 23.041 hybrid contribution -0.649 -0.959 -0.438 1.238 sum 2.439 21.174 5.171 21.933 Atomic orbital electron populations 1.20333 0.85196 1.04113 1.03895 1.22282 0.97451 0.89655 0.94237 1.20843 0.87160 1.00303 1.20564 1.20680 0.94665 0.79996 1.01186 1.67779 0.95979 1.37415 1.15710 1.21900 0.94335 0.90630 0.89407 1.20848 0.90613 1.00476 1.04364 1.21983 0.98166 0.94634 1.03371 1.20913 0.83009 0.93599 0.98907 1.17569 0.85517 0.84505 0.79165 1.90867 1.30956 1.67361 1.50386 1.46178 1.09187 1.08173 1.70201 1.22562 0.97059 0.77511 1.00013 0.87687 1.21812 0.97164 0.87848 0.92624 1.44258 1.48914 1.07664 1.31763 1.19050 1.21240 0.89210 1.05910 0.90281 1.24795 0.99137 0.97823 0.98681 1.69900 1.31558 1.24491 1.31482 0.86132 0.77605 0.81550 0.80103 1.21057 1.21558 1.21144 1.21892 0.95856 0.89976 0.89407 1.23526 0.86071 0.92722 0.96760 0.91995 1.86307 1.17034 1.49544 1.83989 1.47369 1.05824 1.07301 1.47606 1.77466 0.82278 1.21521 1.32014 0.89567 0.89898 0.89772 0.81861 0.88926 0.89415 0.89272 0.80229 0.73054 0.93514 0.95639 0.93630 0.92764 0.92490 0.77267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.43 36.01 0.38 -0.24 16 2 C 0.12 1.46 7.15 -82.63 -0.59 0.87 16 3 C -0.26 -3.05 10.82 -39.18 -0.42 -3.47 16 4 C 0.26 3.58 7.93 -155.56 -1.23 2.35 16 5 N -0.46 -5.56 10.36 -8.48 -0.09 -5.65 16 6 C 0.20 2.00 6.82 -82.18 -0.56 1.44 16 7 C -0.11 -0.57 10.18 36.00 0.37 -0.20 16 8 C -0.16 -1.75 9.27 -39.36 -0.37 -2.12 16 9 C 0.15 2.25 6.82 -81.98 -0.56 1.69 16 10 C 0.55 9.45 7.79 -12.49 -0.10 9.35 16 11 O -0.52 -9.78 16.10 5.29 0.09 -9.69 16 12 N -0.68 -12.23 5.18 -52.64 -0.27 -12.50 16 13 C 0.13 2.64 3.20 -65.64 -0.21 2.43 16 14 H 0.11 2.10 7.73 -51.93 -0.40 1.70 16 15 C 0.13 3.03 6.92 -2.53 -0.02 3.01 16 16 N -0.60 -15.65 3.39 -170.07 -0.58 -16.23 16 17 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.93 -26.80 10.31 55.49 0.57 -26.23 16 21 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.15 3.65 5.13 -3.07 -0.02 3.64 16 26 C 0.07 1.30 4.22 -24.76 -0.10 1.20 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 O -0.56 -9.69 12.15 -35.23 -0.43 -10.12 16 29 N -0.31 -4.58 3.94 -8.87 -0.03 -4.61 16 30 N -0.31 -4.57 9.92 33.51 0.33 -4.24 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.31 8.09 -51.93 -0.42 -0.11 16 38 H 0.18 1.65 7.65 -52.49 -0.40 1.24 16 39 H 0.43 7.52 4.59 -40.82 -0.19 7.34 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.05 1.39 7.42 -51.93 -0.39 1.01 16 44 H 0.06 1.47 7.37 -51.93 -0.38 1.09 16 45 H 0.38 5.09 9.09 45.56 0.41 5.51 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -34.93 375.96 -8.57 -43.50 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.11 Total: 9.84 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -3.69 Total: 13.04 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.07 Total: -69.45 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.34 Total: -19.81 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.93 -8.57 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084068295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.693 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds