Wall clock time and date at job start Wed Apr 1 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38495 * 125.48203 * 2 1 4 4 C 1.39062 * 107.67499 * 179.97438 * 3 2 1 5 5 N 1.33701 * 132.56306 * 179.97438 * 4 3 2 6 6 C 1.31142 * 121.18712 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.76878 * 180.02562 * 6 5 4 8 8 C 1.40134 * 120.46118 * 359.97438 * 6 5 4 9 9 C 1.36883 * 119.26180 * 0.02760 * 8 6 5 10 10 C 1.47500 * 120.61123 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00560 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99901 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00074 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.08004 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99550 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47084 * 60.00066 * 21 19 17 23 23 H 1.48498 * 109.46831 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47190 * 299.99852 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09002 * 110.72265 * 219.52294 * 26 25 16 28 28 O 1.42895 * 110.72044 * 96.24103 * 26 25 16 29 29 N 1.37294 * 106.80155 * 0.23141 * 4 3 2 30 30 N 1.31528 * 125.47945 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47007 * 90.00866 * 1 2 3 32 32 H 1.09003 * 109.47193 * 210.00242 * 1 2 3 33 33 H 1.08994 * 109.47403 * 329.99977 * 1 2 3 34 34 H 1.08002 * 126.16223 * 359.97414 * 3 2 1 35 35 H 1.09000 * 109.46845 * 269.97463 * 7 6 5 36 36 H 1.09002 * 109.47145 * 29.97349 * 7 6 5 37 37 H 1.08997 * 109.47054 * 149.97876 * 7 6 5 38 38 H 1.08002 * 120.36924 * 180.02562 * 8 6 5 39 39 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 40 40 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 41 41 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 42 42 H 0.97004 * 119.99606 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 44 44 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 45 45 H 0.96706 * 113.99347 * 61.46045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7025 0.0006 5 7 4.7971 1.3635 0.0004 6 6 5.9420 0.7241 0.0006 7 6 7.2331 1.5013 0.0010 8 6 5.9733 -0.6769 0.0016 9 6 4.7944 -1.3725 0.0017 10 6 4.7925 -2.8475 0.0021 11 8 5.8447 -3.4568 0.0019 12 7 3.6245 -3.5199 0.0028 13 6 3.6226 -4.9850 0.0027 14 1 4.4309 -5.3751 0.6212 15 6 3.7104 -5.5401 -1.4409 16 7 3.1026 -6.8813 -1.3670 17 6 3.3509 -7.9184 -2.2261 18 1 4.0453 -7.7885 -3.0430 19 6 2.7102 -9.1367 -2.0469 20 7 1.8636 -9.2947 -1.0516 21 14 3.0484 -10.5512 -3.2191 22 1 4.4922 -10.8954 -3.1759 23 1 2.2449 -11.7325 -2.8141 24 1 2.6763 -10.1498 -4.5995 25 6 2.1853 -6.9206 -0.2188 26 6 2.2489 -5.5412 0.4702 27 1 2.2231 -5.6501 1.5545 28 8 1.1843 -4.7013 0.0196 29 7 3.6108 -0.6702 -0.0044 30 7 2.2704 -1.0711 0.0005 31 1 -0.3633 -0.0002 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.9708 2.1528 -0.0004 35 1 7.5448 1.6884 -1.0266 36 1 7.0851 2.4513 0.5144 37 1 8.0032 0.9263 0.5152 38 1 6.9171 -1.2020 0.0021 39 1 2.7850 -3.0339 0.0034 40 1 4.7511 -5.6121 -1.7571 41 1 3.1479 -4.9060 -2.1261 42 1 1.4156 -10.1460 -0.9265 43 1 1.1696 -7.1169 -0.5624 44 1 2.4974 -7.6980 0.4785 45 1 0.3020 -5.0450 0.2164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084068295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:26 Heat of formation + Delta-G solvation = 44.093410 kcal Electronic energy + Delta-G solvation = -30506.208091 eV Core-core repulsion = 26333.044480 eV Total energy + Delta-G solvation = -4173.163611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.54583 -41.24494 -39.83356 -39.28333 -36.52916 -35.87216 -35.36512 -33.68656 -33.56993 -31.45151 -30.43530 -29.53697 -28.99996 -28.47726 -26.83582 -25.50114 -23.58960 -22.63836 -22.19859 -21.68302 -21.51331 -19.87497 -19.19875 -18.41603 -18.09933 -17.80124 -17.50930 -16.96739 -16.85534 -16.23387 -16.12294 -15.82785 -15.60719 -15.07781 -14.94687 -14.87720 -14.59756 -14.41059 -14.25486 -14.12094 -13.93172 -13.89906 -13.27974 -13.24317 -13.09305 -12.91158 -12.77185 -12.63006 -12.39827 -12.21368 -12.18437 -12.12083 -12.06304 -11.90699 -11.65520 -11.05215 -10.94979 -10.80092 -10.41884 -10.33007 -9.10798 -9.01041 -7.92027 -5.28877 -1.11222 -0.32207 0.74247 1.15776 1.43832 1.47290 1.53151 1.59436 1.64617 2.24810 2.44504 2.59533 2.76106 3.05517 3.19386 3.26720 3.56345 3.68590 3.72859 3.77029 3.83023 3.92867 4.13476 4.15667 4.34140 4.37645 4.53106 4.55829 4.69668 4.71749 4.76961 4.80914 4.82331 4.83435 4.87258 5.08363 5.17644 5.22956 5.32914 5.36824 5.40003 5.51907 5.59255 6.08855 6.14300 6.35027 6.43232 6.73350 6.90249 7.01998 7.64908 8.29241 9.17861 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.002898 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.626014 B = 9659.443270 C =10914.706079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.118 3.882 3 C -0.257 4.257 4 C 0.240 3.760 5 N -0.464 5.464 6 C 0.207 3.793 7 C -0.103 4.103 8 C -0.132 4.132 9 C 0.118 3.882 10 C 0.552 3.448 11 O -0.543 6.543 12 N -0.683 5.683 13 C 0.144 3.856 14 H 0.102 0.898 15 C 0.136 3.864 16 N -0.618 5.618 17 C -0.252 4.252 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.947 5.947 21 Si 0.982 3.018 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.162 3.838 26 C 0.091 3.909 27 H 0.092 0.908 28 O -0.564 6.564 29 N -0.321 5.321 30 N -0.344 5.344 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.189 0.811 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.201 0.799 39 H 0.428 0.572 40 H 0.036 0.964 41 H 0.015 0.985 42 H 0.251 0.749 43 H 0.030 0.970 44 H 0.031 0.969 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 24.983 6.054 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 C -0.288 4.288 4 C 0.014 3.986 5 N -0.177 5.177 6 C 0.042 3.958 7 C -0.160 4.160 8 C -0.157 4.157 9 C 0.001 3.999 10 C 0.336 3.664 11 O -0.421 6.421 12 N -0.339 5.339 13 C 0.038 3.962 14 H 0.120 0.880 15 C 0.009 3.991 16 N -0.345 5.345 17 C -0.380 4.380 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.595 5.595 21 Si 0.810 3.190 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.205 1.205 25 C 0.037 3.963 26 C 0.030 3.970 27 H 0.110 0.890 28 O -0.372 6.372 29 N -0.095 5.095 30 N -0.172 5.172 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.206 0.794 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.218 0.782 39 H 0.273 0.727 40 H 0.055 0.945 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.664 24.283 5.826 25.240 hybrid contribution -0.788 -1.493 -0.529 1.769 sum 2.876 22.790 5.296 23.574 Atomic orbital electron populations 1.20507 0.82611 1.05351 1.04826 1.22924 0.98964 0.89077 0.92974 1.21255 0.86550 1.01380 1.19581 1.21179 0.95875 0.79765 1.01823 1.67894 0.96210 1.37422 1.16210 1.22649 0.95380 0.90313 0.87452 1.21061 0.88543 1.00527 1.05857 1.22435 0.97799 0.95419 1.00041 1.20731 0.84335 0.92180 1.02664 1.17911 0.84766 0.85795 0.77933 1.90838 1.31473 1.68398 1.51367 1.46118 1.09852 1.07138 1.70797 1.22239 0.97509 0.78889 0.97536 0.88006 1.21790 0.95963 0.86625 0.94706 1.44522 1.49658 1.08303 1.32058 1.19383 1.21621 0.90390 1.06651 0.90467 1.25632 0.99021 1.00099 1.00383 1.70096 1.32018 1.24741 1.32640 0.85103 0.77598 0.78182 0.78132 1.20297 1.21413 1.20484 1.21727 0.93835 0.92333 0.88415 1.23227 0.86251 0.89827 0.97667 0.88995 1.86284 1.17886 1.48941 1.84131 1.47387 1.05692 1.07686 1.48703 1.77355 0.82850 1.23315 1.33705 0.88627 0.90225 0.86943 0.79383 0.87166 0.88584 0.86840 0.78218 0.72732 0.94549 0.96740 0.93975 0.95232 0.95110 0.75162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.43 71.24 0.74 -0.32 16 2 C 0.12 2.73 7.15 42.67 0.31 3.03 16 3 C -0.26 -5.72 10.82 22.53 0.24 -5.48 16 4 C 0.24 6.34 7.93 133.23 1.06 7.39 16 5 N -0.46 -10.52 10.36 -180.73 -1.87 -12.39 16 6 C 0.21 3.63 6.82 43.12 0.29 3.92 16 7 C -0.10 -0.74 10.18 71.24 0.73 -0.02 16 8 C -0.13 -2.76 9.27 22.41 0.21 -2.55 16 9 C 0.12 3.40 6.82 40.36 0.28 3.68 16 10 C 0.55 19.13 7.79 86.68 0.68 19.80 16 11 O -0.54 -20.60 16.10 -3.99 -0.06 -20.67 16 12 N -0.68 -24.78 5.18 -438.72 -2.27 -27.05 16 13 C 0.14 5.77 3.20 46.47 0.15 5.92 16 14 H 0.10 4.14 7.73 -2.39 -0.02 4.12 16 15 C 0.14 6.41 6.92 86.86 0.60 7.01 16 16 N -0.62 -33.34 3.39 -691.97 -2.35 -35.69 16 17 C -0.25 -14.66 10.28 84.03 0.86 -13.80 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 20 N -0.95 -55.95 10.31 21.65 0.22 -55.72 16 21 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.16 7.91 5.13 86.73 0.44 8.36 16 26 C 0.09 3.41 4.22 31.87 0.13 3.55 16 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 28 O -0.56 -19.17 12.15 -148.98 -1.81 -20.98 16 29 N -0.32 -9.48 3.94 -181.99 -0.72 -10.19 16 30 N -0.34 -10.27 9.92 -47.89 -0.48 -10.74 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.32 8.09 -2.39 -0.02 0.30 16 38 H 0.20 3.22 7.65 -2.91 -0.02 3.20 16 39 H 0.43 15.25 4.59 -92.71 -0.43 14.83 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 41 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.03 1.57 7.42 -2.39 -0.02 1.55 16 44 H 0.03 1.65 7.37 -2.39 -0.02 1.63 16 45 H 0.40 10.33 9.09 -74.05 -0.67 9.66 16 Total: -1.00 -78.13 375.96 -0.17 -78.30 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.05 Total: 29.29 kcal Atomic # 6 Polarization: 30.47 SS G_CDS: 7.18 Total: 37.66 kcal Atomic # 7 Polarization: -144.33 SS G_CDS: -7.46 Total: -151.79 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -1.87 Total: -41.65 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -78.13 -0.17 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084068295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.393 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds