Wall clock time and date at job start Wed Apr 1 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47441 * 180.02562 * 11 10 8 13 13 C 1.35346 * 126.75812 * 94.70808 * 12 11 10 14 14 N 1.35308 * 106.17953 * 179.85484 * 13 12 11 15 15 C 1.46500 * 125.86765 * 180.18749 * 14 13 12 16 16 C 1.53945 * 113.74474 * 14.03514 * 15 14 13 17 17 N 1.47809 * 86.03696 * 222.08429 * 16 15 14 18 18 C 1.36940 * 134.45381 * 204.64393 * 17 16 15 19 19 H 1.08006 * 119.99867 * 179.86639 * 18 17 16 20 20 C 1.38809 * 120.00285 * 359.86518 * 18 17 16 21 21 N 1.31619 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00174 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47091 * 90.00356 * 22 20 18 24 24 H 1.48502 * 109.47204 * 210.00343 * 22 20 18 25 25 H 1.48502 * 109.47080 * 330.00448 * 22 20 18 26 26 C 1.47574 * 91.05073 * 24.54836 * 17 16 15 27 27 N 1.28716 * 108.26395 * 0.42004 * 14 13 12 28 28 N 1.28634 * 110.17514 * 359.73159 * 27 14 13 29 29 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 32 32 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 34 34 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 35 35 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 36 36 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 38 38 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 39 39 H 1.08008 * 126.90497 * 0.02562 * 13 12 11 40 40 H 1.09008 * 112.94621 * 145.62897 * 15 14 13 41 41 H 1.08996 * 113.76862 * 336.34895 * 16 15 14 42 42 H 1.09005 * 113.76686 * 107.74585 * 16 15 14 43 43 H 0.97001 * 120.00017 * 179.97438 * 21 20 18 44 44 H 1.09007 * 113.76791 * 221.14884 * 26 17 16 45 45 H 1.09001 * 113.87494 * 89.76796 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2745 -5.1175 2.6200 13 6 0.1388 -5.1592 3.3550 14 7 0.4902 -5.6548 4.5640 15 6 -0.4143 -5.8847 5.6933 16 6 -1.9053 -5.8363 5.3131 17 7 -2.0939 -5.0716 6.5639 18 6 -3.1498 -4.8633 7.4107 19 1 -3.0252 -4.2446 8.2871 20 6 -4.3802 -5.4473 7.1426 21 7 -4.5319 -6.2017 6.0748 22 14 -5.8203 -5.1638 8.2981 23 1 -6.5753 -3.9616 7.8623 24 1 -6.7165 -6.3476 8.2718 25 1 -5.3139 -4.9568 9.6786 26 6 -0.6876 -4.6250 6.5349 27 7 1.7566 -5.8849 4.5531 28 7 2.2539 -5.5750 3.4080 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9895 2.1011 -0.0004 33 1 5.7911 -0.8249 -0.0010 34 1 4.9566 -2.1203 0.8899 35 1 4.9561 -2.1212 -0.8900 36 1 1.9423 -2.7616 2.0242 37 1 0.4544 -4.7532 0.6840 38 1 2.1670 -5.2380 0.6849 39 1 -0.8497 -4.8599 3.0389 40 1 -0.1407 -6.7577 6.2861 41 1 -2.1101 -5.2601 4.4108 42 1 -2.3912 -6.8120 5.3158 43 1 -5.3916 -6.6102 5.8876 44 1 -0.2032 -4.6353 7.5114 45 1 -0.5321 -3.6922 5.9929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094288691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:24 Heat of formation + Delta-G solvation = 132.582978 kcal Electronic energy + Delta-G solvation = -29133.628958 eV Core-core repulsion = 24964.302542 eV Total energy + Delta-G solvation = -4169.326416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.11001 -42.79845 -39.48808 -38.39318 -35.24396 -34.18840 -33.43101 -32.81234 -31.99684 -31.23372 -28.57861 -27.99494 -27.15665 -26.39391 -25.30320 -24.42795 -23.14499 -21.96371 -21.11312 -20.33307 -19.94332 -19.64874 -18.14588 -17.37193 -16.79521 -16.74108 -16.25874 -16.02069 -15.56914 -15.32614 -15.14282 -14.76874 -14.35872 -14.12773 -13.90799 -13.59465 -13.52383 -13.39526 -13.19291 -13.02438 -12.92365 -12.90529 -12.59619 -12.25292 -12.14147 -11.87771 -11.60408 -11.41663 -11.21230 -10.99936 -10.98326 -10.57075 -10.36380 -10.26211 -9.92043 -9.65722 -9.59541 -9.23432 -9.14901 -9.08264 -8.73524 -7.29159 -6.07672 -3.43178 1.35419 1.77291 1.97248 2.38126 2.41510 2.60584 2.61530 3.24201 3.29620 3.31473 3.38071 4.19194 4.19296 4.31386 4.54713 4.67680 4.69702 4.70958 4.81735 4.91254 5.01203 5.10888 5.13394 5.17419 5.28391 5.37347 5.38040 5.41157 5.47808 5.56584 5.62504 5.68169 5.71432 5.87294 6.01702 6.07513 6.11903 6.14448 6.20913 6.26433 6.50223 6.76376 6.79983 6.99379 7.13163 7.33246 7.64629 8.03533 8.69895 8.72507 9.38809 10.16016 11.09543 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002279 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.796307 B =12283.197378 C =13371.061690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.145 4.145 3 C -0.042 4.042 4 O -0.173 6.173 5 C 0.046 3.954 6 C -0.082 4.082 7 C -0.231 4.231 8 C 0.596 3.404 9 O -0.533 6.533 10 N -0.713 5.713 11 C 0.214 3.786 12 C -0.063 4.063 13 C -0.014 4.014 14 N -0.264 5.264 15 C 0.077 3.923 16 C 0.164 3.836 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.087 0.913 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.920 3.080 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.120 3.880 27 N -0.088 5.088 28 N -0.267 5.267 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.207 0.793 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.405 0.595 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.259 0.741 44 H 0.062 0.938 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.387 10.620 -11.165 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C -0.108 4.108 4 O -0.070 6.070 5 C -0.006 4.006 6 C -0.139 4.139 7 C -0.236 4.236 8 C 0.381 3.619 9 O -0.409 6.409 10 N -0.365 5.365 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.167 4.167 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.007 4.007 27 N -0.067 5.067 28 N -0.133 5.133 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.224 0.776 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.239 0.761 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.346 9.766 -10.924 20.507 hybrid contribution -2.089 0.778 0.492 2.283 sum 12.257 10.544 -10.432 19.242 Atomic orbital electron populations 1.20217 0.88450 1.03102 1.02654 1.21368 0.96903 0.90466 1.05990 1.23625 0.79562 0.99567 1.08054 1.83726 1.29649 1.21864 1.71717 1.22545 0.96041 0.80821 1.01205 1.20476 0.91006 0.97846 1.04539 1.20972 0.93259 0.93906 1.15417 1.17229 0.76509 0.84636 0.83525 1.90814 1.50723 1.67704 1.31694 1.46066 1.69724 1.12089 1.08649 1.19317 1.01936 0.80721 0.89052 1.21692 0.90527 1.09602 0.98406 1.23504 1.02243 1.04565 0.86438 1.47912 1.07410 1.38478 1.11896 1.25297 0.89510 1.02174 0.85517 1.22746 0.84412 0.99062 0.90079 1.45669 1.06321 1.55991 1.24506 1.19001 0.87263 1.27198 1.02493 0.89494 1.24853 0.97732 0.99295 0.97962 1.69759 1.24534 1.35320 1.26850 0.86014 0.81795 0.77442 0.79869 1.21269 1.21338 1.20330 1.22928 0.87141 0.93178 0.97488 1.78273 0.91996 1.20013 1.16447 1.75013 1.26679 1.14135 0.97518 0.90912 0.91022 0.91217 0.77643 0.89869 0.88952 0.88970 0.76090 0.89477 0.89558 0.79220 0.85012 0.94106 0.89009 0.93075 0.91969 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.38 36.01 0.37 -0.39 16 2 C -0.15 -1.48 6.38 -102.49 -0.65 -2.14 16 3 C -0.04 -0.36 11.96 29.30 0.35 -0.01 16 4 O -0.17 -1.72 10.52 7.66 0.08 -1.64 16 5 C 0.05 0.47 7.37 -34.96 -0.26 0.21 16 6 C -0.08 -0.61 10.18 36.01 0.37 -0.24 16 7 C -0.23 -2.68 6.07 -103.28 -0.63 -3.31 16 8 C 0.60 7.67 7.41 -12.54 -0.09 7.58 16 9 O -0.53 -8.59 17.11 5.26 0.09 -8.50 16 10 N -0.71 -8.12 5.54 -62.58 -0.35 -8.47 16 11 C 0.21 2.54 6.23 -5.19 -0.03 2.51 16 12 C -0.06 -0.87 6.62 -82.78 -0.55 -1.42 16 13 C -0.01 -0.20 10.72 -17.05 -0.18 -0.38 16 14 N -0.26 -4.22 3.54 -56.30 -0.20 -4.42 16 15 C 0.08 1.30 5.14 -70.15 -0.36 0.94 16 16 C 0.16 3.30 6.90 -2.84 -0.02 3.28 16 17 N -0.60 -13.61 3.70 -177.89 -0.66 -14.27 16 18 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 19 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 21 N -0.92 -24.86 11.39 55.49 0.63 -24.22 16 22 Si 0.92 20.51 29.55 -169.99 -5.02 15.49 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.12 2.18 8.74 -2.97 -0.03 2.16 16 27 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 28 N -0.27 -4.32 12.41 33.29 0.41 -3.91 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.21 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 4.28 8.45 -40.82 -0.34 3.94 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.19 2.38 6.74 -52.48 -0.35 2.03 16 40 H 0.13 2.16 8.14 -51.92 -0.42 1.74 16 41 H 0.04 0.80 6.31 -51.93 -0.33 0.48 16 42 H 0.09 2.07 7.17 -51.93 -0.37 1.70 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -31.82 390.98 -6.31 -38.13 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.02 Total: 4.04 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.97 Total: 2.58 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.63 Total: -56.00 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.17 Total: -10.14 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.82 -6.31 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094288691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.716 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds