Wall clock time and date at job start Wed Apr 1 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47441 * 180.02562 * 11 10 8 13 13 C 1.35346 * 126.75812 * 94.70808 * 12 11 10 14 14 N 1.35308 * 106.17953 * 179.85484 * 13 12 11 15 15 C 1.46500 * 125.86765 * 180.18749 * 14 13 12 16 16 C 1.53945 * 113.74474 * 14.03514 * 15 14 13 17 17 N 1.47809 * 86.03696 * 222.08429 * 16 15 14 18 18 C 1.36940 * 134.45381 * 204.64393 * 17 16 15 19 19 H 1.08006 * 119.99867 * 179.86639 * 18 17 16 20 20 C 1.38809 * 120.00285 * 359.86518 * 18 17 16 21 21 N 1.31619 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00174 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47091 * 90.00356 * 22 20 18 24 24 H 1.48502 * 109.47204 * 210.00343 * 22 20 18 25 25 H 1.48502 * 109.47080 * 330.00448 * 22 20 18 26 26 C 1.47574 * 91.05073 * 24.54836 * 17 16 15 27 27 N 1.28716 * 108.26395 * 0.42004 * 14 13 12 28 28 N 1.28634 * 110.17514 * 359.73159 * 27 14 13 29 29 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 32 32 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 34 34 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 35 35 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 36 36 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 38 38 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 39 39 H 1.08008 * 126.90497 * 0.02562 * 13 12 11 40 40 H 1.09008 * 112.94621 * 145.62897 * 15 14 13 41 41 H 1.08996 * 113.76862 * 336.34895 * 16 15 14 42 42 H 1.09005 * 113.76686 * 107.74585 * 16 15 14 43 43 H 0.97001 * 120.00017 * 179.97438 * 21 20 18 44 44 H 1.09007 * 113.76791 * 221.14884 * 26 17 16 45 45 H 1.09001 * 113.87494 * 89.76796 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2745 -5.1175 2.6200 13 6 0.1388 -5.1592 3.3550 14 7 0.4902 -5.6548 4.5640 15 6 -0.4143 -5.8847 5.6933 16 6 -1.9053 -5.8363 5.3131 17 7 -2.0939 -5.0716 6.5639 18 6 -3.1498 -4.8633 7.4107 19 1 -3.0252 -4.2446 8.2871 20 6 -4.3802 -5.4473 7.1426 21 7 -4.5319 -6.2017 6.0748 22 14 -5.8203 -5.1638 8.2981 23 1 -6.5753 -3.9616 7.8623 24 1 -6.7165 -6.3476 8.2718 25 1 -5.3139 -4.9568 9.6786 26 6 -0.6876 -4.6250 6.5349 27 7 1.7566 -5.8849 4.5531 28 7 2.2539 -5.5750 3.4080 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9895 2.1011 -0.0004 33 1 5.7911 -0.8249 -0.0010 34 1 4.9566 -2.1203 0.8899 35 1 4.9561 -2.1212 -0.8900 36 1 1.9423 -2.7616 2.0242 37 1 0.4544 -4.7532 0.6840 38 1 2.1670 -5.2380 0.6849 39 1 -0.8497 -4.8599 3.0389 40 1 -0.1407 -6.7577 6.2861 41 1 -2.1101 -5.2601 4.4108 42 1 -2.3912 -6.8120 5.3158 43 1 -5.3916 -6.6102 5.8876 44 1 -0.2032 -4.6353 7.5114 45 1 -0.5321 -3.6922 5.9929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094288691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:23 Heat of formation + Delta-G solvation = 111.594331 kcal Electronic energy + Delta-G solvation = -29134.539094 eV Core-core repulsion = 24964.302542 eV Total energy + Delta-G solvation = -4170.236552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.36700 -43.53114 -40.52415 -39.93303 -36.34239 -35.02110 -34.87319 -33.69710 -33.46428 -32.38494 -29.72550 -29.31328 -28.07751 -27.20982 -26.80598 -26.01598 -24.06173 -23.42043 -22.31893 -21.21132 -21.13662 -20.68163 -19.13691 -18.85894 -18.19101 -17.70340 -17.28688 -16.99399 -16.88764 -16.63737 -16.31798 -15.97406 -15.71866 -15.23835 -14.85674 -14.72605 -14.49430 -14.31775 -14.15392 -14.07053 -13.81077 -13.68131 -13.58598 -13.54788 -13.40447 -13.25861 -12.98146 -12.77844 -12.63677 -12.45006 -12.29131 -12.11170 -11.80966 -11.72919 -11.44013 -11.02727 -10.88655 -10.45511 -10.32942 -10.24103 -9.43898 -9.11085 -8.01067 -5.36374 0.53444 0.62979 1.15003 1.27950 1.32379 1.39681 1.48586 1.49955 1.57513 1.91686 2.40493 2.43279 3.06873 3.10443 3.30565 3.32524 3.53736 3.70018 3.74846 3.90470 3.97164 4.00324 4.14794 4.21113 4.38091 4.46099 4.54590 4.56879 4.57941 4.63934 4.68742 4.75768 4.76761 4.90249 4.98695 4.99653 5.02097 5.03797 5.09369 5.20037 5.23374 5.36509 5.46782 5.65173 5.77184 6.07671 6.37075 6.80320 7.05278 7.44532 7.48739 8.33503 9.15670 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002279 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.796307 B =12283.197378 C =13371.061690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.169 4.169 3 C -0.031 4.031 4 O -0.178 6.178 5 C 0.044 3.956 6 C -0.083 4.083 7 C -0.261 4.261 8 C 0.602 3.398 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.218 3.782 12 C -0.050 4.050 13 C -0.012 4.012 14 N -0.268 5.268 15 C 0.105 3.895 16 C 0.166 3.834 17 N -0.627 5.627 18 C -0.238 4.238 19 H 0.091 0.909 20 C -0.056 4.056 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.125 3.875 27 N -0.107 5.107 28 N -0.278 5.278 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.245 0.755 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.207 0.793 40 H 0.139 0.861 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.194 12.285 -10.946 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.171 4.171 3 C -0.096 4.096 4 O -0.074 6.074 5 C -0.008 4.008 6 C -0.139 4.139 7 C -0.265 4.265 8 C 0.388 3.612 9 O -0.450 6.450 10 N -0.354 5.354 11 C 0.093 3.907 12 C -0.189 4.189 13 C -0.166 4.166 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.039 3.961 17 N -0.354 5.354 18 C -0.366 4.366 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.192 1.192 26 C -0.001 4.001 27 N -0.085 5.085 28 N -0.145 5.145 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.260 0.740 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.245 0.755 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.224 0.776 40 H 0.156 0.844 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.202 11.449 -10.678 21.822 hybrid contribution -2.244 0.314 0.366 2.295 sum 12.958 11.763 -10.311 20.313 Atomic orbital electron populations 1.20227 0.87760 1.03481 1.02733 1.21638 0.97668 0.90491 1.07319 1.24339 0.78674 1.00778 1.05856 1.83752 1.30423 1.21645 1.71564 1.22958 0.96459 0.81130 1.00253 1.20583 0.90686 0.97990 1.04640 1.21062 0.94528 0.93511 1.17416 1.17393 0.75616 0.85092 0.83057 1.90788 1.52636 1.68678 1.32946 1.45964 1.69028 1.11808 1.08640 1.19333 1.02558 0.80916 0.87857 1.21858 0.89798 1.08521 0.98708 1.23828 1.03085 1.03848 0.85820 1.47711 1.07214 1.39043 1.12098 1.24703 0.87884 1.01891 0.85276 1.22616 0.86315 0.97489 0.89674 1.45905 1.07518 1.56958 1.25062 1.19334 0.88132 1.26244 1.02877 0.89144 1.25595 1.00075 0.99779 0.99522 1.69913 1.24516 1.36677 1.28462 0.85076 0.78843 0.76707 0.78668 1.21287 1.22105 1.19223 1.23014 0.84700 0.93832 0.98546 1.78280 0.92206 1.21043 1.17005 1.75001 1.27342 1.14472 0.97682 0.90991 0.88887 0.92575 0.73951 0.87885 0.88484 0.89104 0.75455 0.88442 0.89597 0.77636 0.84356 0.93541 0.91768 0.93784 0.90591 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.38 71.24 0.74 -0.65 16 2 C -0.17 -3.24 6.38 -18.49 -0.12 -3.36 16 3 C -0.03 -0.46 11.96 66.89 0.80 0.34 16 4 O -0.18 -3.19 10.52 4.51 0.05 -3.14 16 5 C 0.04 0.85 7.37 25.26 0.19 1.04 16 6 C -0.08 -1.12 10.18 71.24 0.72 -0.40 16 7 C -0.26 -5.88 6.07 -18.99 -0.12 -5.99 16 8 C 0.60 15.32 7.41 86.65 0.64 15.96 16 9 O -0.57 -18.52 17.11 -4.08 -0.07 -18.59 16 10 N -0.70 -15.42 5.54 -470.15 -2.61 -18.03 16 11 C 0.22 4.93 6.23 85.63 0.53 5.46 16 12 C -0.05 -1.30 6.62 41.59 0.28 -1.03 16 13 C -0.01 -0.34 10.72 83.49 0.89 0.56 16 14 N -0.27 -8.18 3.54 -332.04 -1.18 -9.36 16 15 C 0.10 3.42 5.14 46.75 0.24 3.66 16 16 C 0.17 6.64 6.90 86.44 0.60 7.23 16 17 N -0.63 -28.15 3.70 -716.73 -2.65 -30.81 16 18 C -0.24 -12.02 10.70 84.03 0.90 -11.12 16 19 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.06 -2.89 5.50 84.86 0.47 -2.42 16 21 N -0.95 -51.96 11.39 21.65 0.25 -51.72 16 22 Si 0.98 42.14 29.55 68.60 2.03 44.17 16 23 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 C 0.13 4.35 8.74 86.49 0.76 5.11 16 27 N -0.11 -3.49 13.17 37.02 0.49 -3.01 16 28 N -0.28 -8.66 12.41 -48.60 -0.60 -9.26 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.24 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.41 8.24 8.45 -92.70 -0.78 7.45 16 37 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.21 4.81 6.74 -2.91 -0.02 4.79 16 40 H 0.14 4.38 8.14 -2.38 -0.02 4.37 16 41 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 42 H 0.06 2.94 7.17 -2.38 -0.02 2.93 16 43 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 44 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.09 390.98 3.48 -64.62 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.26 Total: 20.73 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.52 Total: 14.40 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -6.31 Total: -122.18 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.02 Total: -21.73 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.09 3.48 -64.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094288691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.210 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds