Wall clock time and date at job start Wed Apr 1 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34172 * 127.02121 * 2 1 4 4 O 1.34216 * 109.12562 * 180.02562 * 3 2 1 5 5 C 1.33657 * 110.90601 * 359.72472 * 4 3 2 6 6 C 1.36412 * 108.39486 * 0.44732 * 5 4 3 7 7 C 1.47389 * 127.19156 * 179.83984 * 6 5 4 8 8 O 1.21610 * 119.99815 * 179.68783 * 7 6 5 9 9 N 1.34780 * 119.99760 * 359.68258 * 7 6 5 10 10 C 1.47024 * 125.64890 * 0.04339 * 9 7 6 11 11 C 1.54319 * 107.26898 * 181.02238 * 10 9 7 12 12 C 1.55158 * 102.94516 * 22.19557 * 11 10 9 13 13 H 1.09001 * 111.03719 * 82.58248 * 12 11 10 14 14 N 1.46492 * 111.00704 * 206.42401 * 12 11 10 15 15 C 1.35317 * 125.86956 * 78.66111 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47426 * 125.64416 * 180.02562 * 9 7 6 30 30 H 1.08992 * 109.47718 * 269.97332 * 1 2 3 31 31 H 1.08998 * 109.47621 * 29.98094 * 1 2 3 32 32 H 1.09009 * 109.46779 * 149.97473 * 1 2 3 33 33 H 1.07996 * 125.43800 * 0.02562 * 3 2 1 34 34 H 1.07999 * 125.80107 * 180.29348 * 5 4 3 35 35 H 1.08996 * 109.88207 * 300.44118 * 10 9 7 36 36 H 1.08998 * 109.88189 * 61.45303 * 10 9 7 37 37 H 1.09001 * 110.72299 * 263.82947 * 11 10 9 38 38 H 1.09004 * 110.72030 * 140.55370 * 11 10 9 39 39 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 40 40 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 41 41 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 42 42 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 43 43 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36695 * 37.06669 * 29 9 7 45 45 H 1.08999 * 110.45194 * 274.78861 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6759 0.0050 6 6 2.3923 -1.1738 -0.0006 7 6 1.9914 -2.5921 -0.0007 8 8 0.8125 -2.8907 -0.0004 9 7 2.9313 -3.5581 -0.0013 10 6 4.3851 -3.3390 -0.0009 11 6 5.0577 -4.7277 -0.0282 12 6 3.9476 -5.6401 -0.6135 13 1 3.9279 -5.5834 -1.7019 14 7 4.1154 -7.0247 -0.1655 15 6 3.7631 -7.5143 1.0458 16 6 4.0929 -8.8270 1.0322 17 6 3.9005 -9.8166 2.1524 18 7 2.6376 -10.5336 1.9591 19 6 2.2485 -11.4898 2.8587 20 1 2.8725 -11.7152 3.7109 21 6 1.0522 -12.1695 2.6752 22 7 0.2921 -11.8952 1.6363 23 14 0.5211 -13.4735 3.9028 24 1 -0.2890 -12.8427 4.9757 25 1 -0.2926 -14.5041 3.2092 26 1 1.7227 -14.1104 4.4994 27 7 4.6242 -9.0728 -0.1706 28 7 4.6230 -7.9846 -0.8566 29 6 2.6718 -5.0093 -0.0021 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5143 33 1 1.9894 2.1010 0.0004 34 1 4.5702 -1.2608 0.0104 35 1 4.6744 -2.7696 -0.8842 36 1 4.6786 -2.8001 0.8999 37 1 5.3269 -5.0456 0.9791 38 1 5.9327 -4.7197 -0.6781 39 1 3.3106 -6.9676 1.8598 40 1 4.7259 -10.5286 2.1540 41 1 3.8756 -9.2870 3.1048 42 1 2.0775 -10.3314 1.1934 43 1 -0.5437 -12.3704 1.5080 44 1 1.8024 -5.2389 -0.6180 45 1 2.5209 -5.3697 1.0155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098700644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:14 Heat of formation + Delta-G solvation = 115.384277 kcal Electronic energy + Delta-G solvation = -29113.301152 eV Core-core repulsion = 24943.228945 eV Total energy + Delta-G solvation = -4170.072207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.13464 -43.03890 -40.41629 -38.05506 -35.11898 -34.32910 -34.11617 -32.03267 -31.53325 -30.97934 -29.92177 -28.97790 -27.64803 -26.04088 -25.35908 -23.40497 -22.88960 -22.63521 -21.32222 -20.83821 -20.66481 -19.92824 -18.14201 -17.73886 -17.08732 -16.82138 -16.64173 -16.20550 -15.84961 -15.71551 -14.98492 -14.79591 -14.56831 -14.46551 -14.26822 -13.80322 -13.68854 -13.50252 -13.35180 -13.22730 -13.09614 -12.96992 -12.69310 -12.40206 -12.22472 -12.02707 -11.91449 -11.58845 -11.27732 -10.89434 -10.79242 -10.54039 -10.41061 -10.08150 -10.02340 -9.91202 -9.71989 -9.29362 -9.17522 -8.90424 -8.85328 -6.90351 -5.71876 -3.01867 0.83082 1.55846 1.71743 1.92654 2.38346 2.63106 2.86294 2.87323 3.47426 3.52267 3.54572 3.58991 3.72025 4.00045 4.06814 4.15608 4.30484 4.36509 4.44012 4.64043 4.70008 4.73331 4.79574 4.94454 5.04512 5.11733 5.20677 5.23760 5.27815 5.34492 5.38206 5.47749 5.49761 5.56706 5.63154 5.65078 5.79435 6.04515 6.18126 6.37012 6.46152 6.63372 6.69083 6.76729 6.86399 7.67985 7.72730 8.45119 8.77922 9.56893 10.12269 10.48036 11.50803 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002089 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.157081 B =13399.653406 C =14668.261704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.130 4.130 3 C -0.045 4.045 4 O -0.171 6.171 5 C 0.010 3.990 6 C -0.230 4.230 7 C 0.606 3.394 8 O -0.520 6.520 9 N -0.616 5.616 10 C 0.090 3.910 11 C -0.139 4.139 12 C 0.136 3.864 13 H 0.131 0.869 14 N -0.293 5.293 15 C -0.045 4.045 16 C 0.000 4.000 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.091 5.091 29 C 0.102 3.898 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.209 0.791 34 H 0.219 0.781 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.188 0.812 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.100 0.900 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 31.418 -4.394 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.111 4.111 4 O -0.066 6.066 5 C -0.060 4.060 6 C -0.235 4.235 7 C 0.396 3.604 8 O -0.396 6.396 9 N -0.352 5.352 10 C -0.033 4.033 11 C -0.178 4.178 12 C 0.032 3.968 13 H 0.149 0.851 14 N -0.087 5.087 15 C -0.195 4.195 16 C -0.138 4.138 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.070 5.070 29 C -0.022 4.022 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.235 0.765 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.118 0.882 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.016 30.999 -5.616 33.057 hybrid contribution -1.109 -0.335 1.338 1.770 sum 8.906 30.663 -4.278 32.216 Atomic orbital electron populations 1.20268 0.88109 1.03381 1.02827 1.21435 0.97412 0.90142 1.04177 1.23771 0.79600 0.99806 1.07950 1.83818 1.29717 1.22364 1.70710 1.25209 0.99270 0.81188 1.00321 1.21256 0.93566 0.93642 1.15001 1.16871 0.84368 0.83068 0.76091 1.90835 1.16586 1.82769 1.49417 1.48087 1.06316 1.05875 1.74897 1.22410 0.80269 0.98026 1.02574 1.23123 0.98117 0.92629 1.03974 1.22565 0.96160 0.76268 1.01851 0.85143 1.46999 1.41511 1.09397 1.10774 1.23319 1.08304 0.96555 0.91304 1.22481 1.01590 0.93692 0.96009 1.18963 0.91092 0.90087 0.89561 1.42302 1.19766 1.44445 1.30548 1.19216 1.02668 1.12024 1.03229 0.90880 1.24769 0.97556 1.00373 0.98240 1.69681 1.14004 1.44808 1.29458 0.86155 0.78253 0.81282 0.80271 1.21730 1.21794 1.20668 1.75118 1.16938 1.15939 1.03765 1.78299 1.17045 0.91148 1.20477 1.22474 0.97123 0.79493 1.03066 0.90977 0.91536 0.89864 0.77467 0.76515 0.89945 0.89801 0.88748 0.87911 0.79520 0.94270 0.94474 0.78080 0.93486 0.88195 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.00 36.01 0.36 -0.34 16 2 C -0.13 -1.08 6.37 -102.50 -0.65 -1.73 16 3 C -0.05 -0.27 11.96 29.30 0.35 0.08 16 4 O -0.17 -1.10 10.52 7.64 0.08 -1.02 16 5 C 0.01 0.06 10.63 30.07 0.32 0.38 16 6 C -0.23 -2.02 6.28 -103.27 -0.65 -2.67 16 7 C 0.61 6.55 7.84 -12.53 -0.10 6.45 16 8 O -0.52 -7.65 15.66 5.27 0.08 -7.57 16 9 N -0.62 -5.01 3.33 -171.81 -0.57 -5.58 16 10 C 0.09 0.37 5.01 -3.07 -0.02 0.35 16 11 C -0.14 -0.70 6.64 -24.90 -0.17 -0.87 16 12 C 0.14 1.15 4.08 -65.79 -0.27 0.88 16 13 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 14 N -0.29 -3.86 3.37 -52.69 -0.18 -4.03 16 15 C -0.04 -0.65 10.59 -17.04 -0.18 -0.83 16 16 C 0.00 0.00 6.62 -82.77 -0.55 -0.55 16 17 C 0.23 4.85 6.82 -5.19 -0.04 4.81 16 18 N -0.73 -19.08 5.59 -61.08 -0.34 -19.42 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 N -0.25 -4.99 12.41 33.29 0.41 -4.58 16 28 N -0.09 -1.55 13.16 60.35 0.79 -0.75 16 29 C 0.10 0.95 6.34 -2.54 -0.02 0.93 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.84 6.92 -51.92 -0.36 0.48 16 33 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.22 0.46 4.46 -52.49 -0.23 0.23 16 35 H 0.08 0.17 6.90 -51.93 -0.36 -0.19 16 36 H 0.08 0.20 7.02 -51.93 -0.36 -0.16 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.19 2.16 7.02 -52.49 -0.37 1.79 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.39 10.97 7.66 -40.82 -0.31 10.66 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.10 1.09 8.04 -51.93 -0.42 0.67 16 45 H 0.09 0.85 6.38 -51.93 -0.33 0.52 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -38.35 378.25 -5.84 -44.19 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.67 Total: 4.23 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.84 Total: -0.57 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.84 Total: -62.67 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.16 Total: -8.59 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.35 -5.84 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098700644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.575 kcal (2) G-P(sol) polarization free energy of solvation -38.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds