Wall clock time and date at job start Wed Apr 1 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34172 * 127.02121 * 2 1 4 4 O 1.34216 * 109.12562 * 180.02562 * 3 2 1 5 5 C 1.33657 * 110.90601 * 359.72472 * 4 3 2 6 6 C 1.36412 * 108.39486 * 0.44732 * 5 4 3 7 7 C 1.47389 * 127.19156 * 179.83984 * 6 5 4 8 8 O 1.21610 * 119.99815 * 179.68783 * 7 6 5 9 9 N 1.34780 * 119.99760 * 359.68258 * 7 6 5 10 10 C 1.47024 * 125.64890 * 0.04339 * 9 7 6 11 11 C 1.54319 * 107.26898 * 181.02238 * 10 9 7 12 12 C 1.55158 * 102.94516 * 22.19557 * 11 10 9 13 13 H 1.09001 * 111.03719 * 82.58248 * 12 11 10 14 14 N 1.46492 * 111.00704 * 206.42401 * 12 11 10 15 15 C 1.35317 * 125.86956 * 78.66111 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47426 * 125.64416 * 180.02562 * 9 7 6 30 30 H 1.08992 * 109.47718 * 269.97332 * 1 2 3 31 31 H 1.08998 * 109.47621 * 29.98094 * 1 2 3 32 32 H 1.09009 * 109.46779 * 149.97473 * 1 2 3 33 33 H 1.07996 * 125.43800 * 0.02562 * 3 2 1 34 34 H 1.07999 * 125.80107 * 180.29348 * 5 4 3 35 35 H 1.08996 * 109.88207 * 300.44118 * 10 9 7 36 36 H 1.08998 * 109.88189 * 61.45303 * 10 9 7 37 37 H 1.09001 * 110.72299 * 263.82947 * 11 10 9 38 38 H 1.09004 * 110.72030 * 140.55370 * 11 10 9 39 39 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 40 40 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 41 41 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 42 42 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 43 43 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36695 * 37.06669 * 29 9 7 45 45 H 1.08999 * 110.45194 * 274.78861 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6759 0.0050 6 6 2.3923 -1.1738 -0.0006 7 6 1.9914 -2.5921 -0.0007 8 8 0.8125 -2.8907 -0.0004 9 7 2.9313 -3.5581 -0.0013 10 6 4.3851 -3.3390 -0.0009 11 6 5.0577 -4.7277 -0.0282 12 6 3.9476 -5.6401 -0.6135 13 1 3.9279 -5.5834 -1.7019 14 7 4.1154 -7.0247 -0.1655 15 6 3.7631 -7.5143 1.0458 16 6 4.0929 -8.8270 1.0322 17 6 3.9005 -9.8166 2.1524 18 7 2.6376 -10.5336 1.9591 19 6 2.2485 -11.4898 2.8587 20 1 2.8725 -11.7152 3.7109 21 6 1.0522 -12.1695 2.6752 22 7 0.2921 -11.8952 1.6363 23 14 0.5211 -13.4735 3.9028 24 1 -0.2890 -12.8427 4.9757 25 1 -0.2926 -14.5041 3.2092 26 1 1.7227 -14.1104 4.4994 27 7 4.6242 -9.0728 -0.1706 28 7 4.6230 -7.9846 -0.8566 29 6 2.6718 -5.0093 -0.0021 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5143 33 1 1.9894 2.1010 0.0004 34 1 4.5702 -1.2608 0.0104 35 1 4.6744 -2.7696 -0.8842 36 1 4.6786 -2.8001 0.8999 37 1 5.3269 -5.0456 0.9791 38 1 5.9327 -4.7197 -0.6781 39 1 3.3106 -6.9676 1.8598 40 1 4.7259 -10.5286 2.1540 41 1 3.8756 -9.2870 3.1048 42 1 2.0775 -10.3314 1.1934 43 1 -0.5437 -12.3704 1.5080 44 1 1.8024 -5.2389 -0.6180 45 1 2.5209 -5.3697 1.0155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098700644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:13 Heat of formation + Delta-G solvation = 86.616000 kcal Electronic energy + Delta-G solvation = -29114.548638 eV Core-core repulsion = 24943.228945 eV Total energy + Delta-G solvation = -4171.319693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.34183 -43.56363 -41.12216 -38.85251 -36.84324 -35.39138 -34.80868 -33.73324 -32.41265 -31.71354 -31.46177 -29.69404 -28.18170 -27.73786 -26.20689 -24.80807 -24.25462 -23.23661 -22.36440 -21.83860 -21.47689 -20.53340 -19.39778 -18.73746 -18.42631 -17.41013 -17.30186 -17.14734 -16.75406 -16.61471 -16.38132 -16.00641 -15.55948 -15.48207 -15.14163 -15.03645 -14.78172 -14.38545 -14.32684 -14.13323 -14.03141 -13.93020 -13.56376 -13.49901 -13.17569 -12.94540 -12.88377 -12.76126 -12.57397 -12.46292 -12.11484 -12.09680 -11.90190 -11.83326 -11.26804 -11.03649 -10.95891 -10.62729 -10.26045 -9.93417 -9.64372 -9.02789 -7.93820 -5.24445 0.29102 0.53166 1.03288 1.06552 1.42376 1.50309 1.51794 1.60590 1.74615 2.10733 2.17715 2.59058 2.87707 3.15477 3.32858 3.40793 3.51335 3.60955 3.61401 3.80383 3.89444 3.92303 4.02152 4.17819 4.22395 4.28122 4.32175 4.42692 4.46984 4.48512 4.55555 4.73565 4.76429 4.81815 4.88931 4.89126 5.00580 5.02395 5.06128 5.10718 5.16971 5.46270 5.50629 5.60891 5.97615 6.21500 6.25675 6.94392 7.32314 7.46959 8.03909 8.29232 9.30194 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002089 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.157081 B =13399.653406 C =14668.261704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.168 4.168 3 C -0.028 4.028 4 O -0.172 6.172 5 C 0.040 3.960 6 C -0.266 4.266 7 C 0.599 3.401 8 O -0.577 6.577 9 N -0.611 5.611 10 C 0.085 3.915 11 C -0.126 4.126 12 C 0.128 3.872 13 H 0.141 0.859 14 N -0.274 5.274 15 C -0.022 4.022 16 C -0.031 4.031 17 C 0.234 3.766 18 N -0.740 5.740 19 C -0.242 4.242 20 H 0.086 0.914 21 C -0.081 4.081 22 N -0.974 5.974 23 Si 0.980 3.020 24 H -0.284 1.284 25 H -0.299 1.299 26 H -0.265 1.265 27 N -0.294 5.294 28 N -0.102 5.102 29 C 0.102 3.898 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.243 0.757 34 H 0.256 0.744 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.219 0.781 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 34.197 -3.415 36.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.170 4.170 3 C -0.094 4.094 4 O -0.066 6.066 5 C -0.030 4.030 6 C -0.271 4.271 7 C 0.392 3.608 8 O -0.458 6.458 9 N -0.345 5.345 10 C -0.036 4.036 11 C -0.165 4.165 12 C 0.026 3.974 13 H 0.159 0.841 14 N -0.068 5.068 15 C -0.173 4.173 16 C -0.169 4.169 17 C 0.107 3.893 18 N -0.383 5.383 19 C -0.373 4.373 20 H 0.104 0.896 21 C -0.273 4.273 22 N -0.625 5.625 23 Si 0.808 3.192 24 H -0.211 1.211 25 H -0.226 1.226 26 H -0.190 1.190 27 N -0.161 5.161 28 N -0.080 5.080 29 C -0.022 4.022 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.259 0.741 34 H 0.272 0.728 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.235 0.765 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.201 0.799 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.724 33.815 -4.635 36.426 hybrid contribution -1.841 -1.046 0.992 2.338 sum 10.884 32.769 -3.642 34.720 Atomic orbital electron populations 1.20178 0.88751 1.02900 1.02346 1.21658 0.97646 0.91202 1.06474 1.24322 0.78903 1.00593 1.05541 1.83866 1.29822 1.22580 1.70309 1.25789 0.99185 0.80983 0.97083 1.21254 0.95285 0.92548 1.17981 1.17281 0.83960 0.84273 0.75311 1.90801 1.18997 1.83670 1.52326 1.48081 1.07985 1.04705 1.73709 1.22789 0.77251 0.98119 1.05485 1.23163 0.97398 0.91583 1.04314 1.22971 0.97533 0.74227 1.02674 0.84119 1.47298 1.39228 1.10411 1.09842 1.23611 1.06187 0.95335 0.92159 1.22254 1.04078 0.94934 0.95680 1.18998 0.88362 0.90333 0.91651 1.42529 1.21351 1.44774 1.29646 1.19706 1.02503 1.11685 1.03427 0.89580 1.25678 0.98043 1.03154 1.00378 1.69863 1.14420 1.46432 1.31794 0.85043 0.78026 0.78258 0.77829 1.21066 1.22619 1.18997 1.75048 1.18729 1.17691 1.04662 1.78185 1.17967 0.91322 1.20573 1.22335 0.96718 0.80797 1.02396 0.91539 0.89239 0.93036 0.74113 0.72834 0.86885 0.86957 0.88487 0.85518 0.76484 0.94997 0.91928 0.79924 0.94132 0.90760 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 10.00 71.24 0.71 -0.69 16 2 C -0.17 -2.65 6.37 -18.49 -0.12 -2.77 16 3 C -0.03 -0.26 11.96 66.89 0.80 0.54 16 4 O -0.17 -1.56 10.52 4.41 0.05 -1.51 16 5 C 0.04 0.31 10.63 67.39 0.72 1.03 16 6 C -0.27 -4.30 6.28 -18.99 -0.12 -4.42 16 7 C 0.60 12.96 7.84 86.65 0.68 13.64 16 8 O -0.58 -18.26 15.66 -4.06 -0.06 -18.32 16 9 N -0.61 -8.96 3.33 -815.74 -2.71 -11.68 16 10 C 0.08 0.32 5.01 86.73 0.43 0.76 16 11 C -0.13 -0.76 6.64 31.78 0.21 -0.55 16 12 C 0.13 1.92 4.08 46.38 0.19 2.11 16 13 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 14 N -0.27 -6.87 3.37 -320.62 -1.08 -7.95 16 15 C -0.02 -0.60 10.59 83.49 0.88 0.28 16 16 C -0.03 -1.16 6.62 41.60 0.28 -0.89 16 17 C 0.23 9.77 6.82 85.63 0.58 10.36 16 18 N -0.74 -39.53 5.59 -347.17 -1.94 -41.47 16 19 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 20 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 22 N -0.97 -62.35 13.06 21.65 0.28 -62.06 16 23 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 N -0.29 -11.89 12.41 -48.60 -0.60 -12.49 16 28 N -0.10 -3.42 13.16 37.02 0.49 -2.94 16 29 C 0.10 1.83 6.34 86.85 0.55 2.38 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.16 6.92 -2.38 -0.02 1.15 16 33 H 0.24 0.25 8.06 -2.91 -0.02 0.22 16 34 H 0.26 -0.38 4.46 -2.91 -0.01 -0.39 16 35 H 0.11 -0.17 6.90 -2.39 -0.02 -0.19 16 36 H 0.11 -0.10 7.02 -2.39 -0.02 -0.11 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.22 4.54 7.02 -2.91 -0.02 4.52 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.37 21.74 7.66 -92.71 -0.71 21.03 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 45 H 0.09 1.58 6.38 -2.39 -0.02 1.56 16 Total: -1.00 -89.17 378.25 3.89 -85.28 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.34 Total: 19.41 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 7.11 Total: 4.54 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -5.57 Total: -138.59 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.02 Total: -19.83 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -89.17 3.89 -85.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098700644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.897 kcal (2) G-P(sol) polarization free energy of solvation -89.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds