Wall clock time and date at job start Wed Apr 1 2020 02:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34849 * 119.68036 * 2 1 4 4 C 1.40580 * 120.34053 * 179.74261 * 3 2 1 5 5 C 1.35888 * 119.72945 * 0.26435 * 4 3 2 6 6 C 1.41191 * 119.34769 * 359.97438 * 5 4 3 7 7 N 1.32236 * 132.04259 * 180.02562 * 6 5 4 8 8 C 1.34584 * 109.01947 * 179.97438 * 7 6 5 9 9 C 1.47590 * 125.91871 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00280 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99701 * 0.03338 * 9 8 7 12 12 C 1.46504 * 120.00134 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47322 * 179.97438 * 12 11 9 14 14 N 1.46904 * 109.46987 * 179.97438 * 13 12 11 15 15 C 1.46904 * 110.99769 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47050 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99706 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00245 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00236 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99986 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00112 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00014 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00421 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46849 * 59.99677 * 23 21 19 25 25 H 1.48498 * 109.47513 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46973 * 299.99929 * 23 21 19 27 27 C 1.36573 * 108.16430 * 0.02562 * 8 7 6 28 28 N 1.36197 * 107.09515 * 359.97438 * 27 8 7 29 29 H 1.09001 * 109.47502 * 89.99345 * 1 2 3 30 30 H 1.08998 * 109.47113 * 209.99838 * 1 2 3 31 31 H 1.09004 * 109.46756 * 329.99843 * 1 2 3 32 32 H 1.08002 * 119.83241 * 0.02986 * 3 2 1 33 33 H 1.07998 * 120.12831 * 180.23444 * 4 3 2 34 34 H 1.08000 * 120.32879 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00152 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.46831 * 299.99596 * 12 11 9 37 37 H 1.09004 * 109.46949 * 59.99287 * 12 11 9 38 38 H 1.09002 * 109.46951 * 299.99661 * 13 12 11 39 39 H 1.08998 * 109.47324 * 60.00183 * 13 12 11 40 40 H 1.00897 * 111.00154 * 56.04526 * 14 13 12 41 41 H 1.09005 * 109.47363 * 299.99720 * 15 14 13 42 42 H 1.08998 * 109.47121 * 60.00157 * 15 14 13 43 43 H 0.97003 * 119.99415 * 359.97438 * 18 16 15 44 44 H 0.97004 * 119.99964 * 180.02562 * 22 21 19 45 45 H 1.08006 * 126.45354 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1716 0.0000 4 6 3.5804 1.1878 0.0055 5 6 4.2679 0.0156 0.0053 6 6 3.5563 -1.2039 0.0002 7 7 3.9583 -2.4637 -0.0007 8 6 2.8794 -3.2683 -0.0058 9 6 2.8999 -4.7440 -0.0090 10 8 1.8555 -5.3666 -0.0141 11 7 4.0764 -5.4016 -0.0060 12 6 4.0969 -6.8665 -0.0097 13 6 5.5463 -7.3563 -0.0058 14 7 5.5667 -8.8252 -0.0089 15 6 6.9454 -9.3325 -0.0059 16 6 6.9262 -10.8394 -0.0098 17 8 5.8680 -11.4324 -0.0141 18 7 8.0847 -11.5281 -0.0075 19 6 8.0672 -12.8989 -0.0116 20 1 7.1251 -13.4270 -0.0162 21 6 9.2615 -13.6089 -0.0097 22 7 10.4079 -12.9665 -0.0045 23 14 9.2378 -15.4768 -0.0145 24 1 8.5352 -15.9597 -1.2304 25 1 10.6314 -15.9896 -0.0122 26 1 8.5278 -15.9659 1.1946 27 6 1.7623 -2.4826 -0.0088 28 7 2.1838 -1.1874 -0.0048 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6268 2.1023 0.0005 33 1 4.1117 2.1280 0.0093 34 1 5.3478 0.0168 0.0090 35 1 4.9096 -4.9049 -0.0022 36 1 3.5847 -7.2392 0.8774 37 1 3.5916 -7.2347 -0.9026 38 1 6.0581 -6.9836 -0.8931 39 1 6.0519 -6.9882 0.8869 40 1 5.0483 -9.1924 -0.7927 41 1 7.4664 -8.9739 -0.8937 42 1 7.4612 -8.9776 0.8863 43 1 8.9308 -11.0538 -0.0037 44 1 11.2417 -13.4622 -0.0036 45 1 0.7377 -2.8239 -0.0127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150548708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:32 Heat of formation + Delta-G solvation = 17.923951 kcal Electronic energy + Delta-G solvation = -27503.327288 eV Core-core repulsion = 23329.028884 eV Total energy + Delta-G solvation = -4174.298404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39255 -39.73818 -38.29173 -37.91790 -36.23154 -34.78804 -34.29045 -33.69651 -31.95619 -31.20172 -30.05428 -29.23567 -27.87541 -26.25585 -24.70018 -23.60506 -23.22689 -22.15998 -21.84424 -20.39914 -19.24060 -18.59782 -17.89044 -17.51482 -17.00270 -16.70390 -16.16669 -15.94406 -15.82089 -15.63031 -15.07805 -14.82904 -14.53859 -14.45629 -14.24098 -14.08725 -13.80670 -13.71369 -13.40343 -13.35239 -13.08676 -12.92489 -12.39036 -12.17496 -11.95479 -11.85988 -11.54813 -11.48668 -11.40969 -11.35485 -10.98270 -10.83869 -10.41714 -10.33580 -10.18475 -9.47329 -9.42143 -9.12628 -8.45951 -8.36732 -8.07818 -7.93434 -6.38974 -3.79786 0.08226 0.70201 1.66043 1.90348 2.83799 2.92486 3.22863 3.27552 3.28229 3.33047 3.54771 3.74938 3.93582 4.08016 4.13919 4.18539 4.43392 4.46876 4.63051 4.71766 4.80753 4.82153 4.90988 4.98916 5.05902 5.12384 5.22999 5.26468 5.29718 5.45896 5.47495 5.59630 5.78147 5.85610 5.90278 5.93391 5.97129 6.00535 6.24030 6.30575 6.44551 7.09263 7.15959 7.43001 7.57843 7.63014 8.02648 8.08800 8.64070 9.20533 9.56866 10.08501 10.78682 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.034839 B = 0.001345 C = 0.001297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.493262 B =20817.745862 C =21588.154964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.088 3.912 3 C -0.143 4.143 4 C -0.096 4.096 5 C -0.082 4.082 6 C 0.231 3.769 7 N -0.465 5.465 8 C 0.009 3.991 9 C 0.601 3.399 10 O -0.534 6.534 11 N -0.710 5.710 12 C 0.120 3.880 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.018 4.018 28 N -0.362 5.362 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.352 0.648 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.285 35.352 -0.875 38.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.015 4.015 7 N -0.187 5.187 8 C -0.124 4.124 9 C 0.385 3.615 10 O -0.411 6.411 11 N -0.361 5.361 12 C -0.004 4.004 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.153 4.153 28 N -0.034 5.034 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.846 33.974 -0.200 37.077 hybrid contribution 0.611 0.121 -0.896 1.091 sum -14.235 34.095 -1.096 36.964 Atomic orbital electron populations 1.20980 0.87607 1.04889 1.04219 1.20372 0.95371 0.83550 1.02144 1.20685 0.94837 0.96578 1.04211 1.21075 0.93667 0.98532 0.98706 1.20348 1.00942 0.87480 1.01422 1.20968 0.79979 0.94486 1.06067 1.70833 1.28589 0.98103 1.21142 1.20602 0.89259 0.94359 1.08195 1.16818 0.83996 0.84057 0.76596 1.90831 1.32113 1.67657 1.50452 1.45688 1.08668 1.07694 1.74067 1.21342 0.97369 0.78026 1.03619 1.22077 0.95224 0.89558 1.01253 1.59947 1.13759 1.04722 1.51391 1.21671 0.89679 0.95299 1.01395 1.19788 0.84978 0.88123 0.84551 1.90533 1.30475 1.70294 1.55325 1.41844 1.06670 1.07091 1.64384 1.19667 0.94482 0.81155 1.47672 0.87943 1.25256 0.94638 1.00695 0.97298 1.69609 0.97506 1.36665 1.50584 0.85913 0.77021 0.82163 0.79087 1.19924 1.20995 1.19870 1.22550 1.01303 0.80206 1.11270 1.42734 1.08915 1.05650 1.46132 0.89455 0.90364 0.88924 0.83022 0.83681 0.82788 0.75540 0.89889 0.91082 0.94772 0.90329 0.82836 0.93688 0.89428 0.77442 0.91844 0.78795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 9.84 36.01 0.35 0.05 16 2 C 0.09 0.48 6.78 -81.63 -0.55 -0.08 16 3 C -0.14 -0.53 9.58 -39.90 -0.38 -0.91 16 4 C -0.10 -0.38 10.06 -39.54 -0.40 -0.78 16 5 C -0.08 -0.52 10.11 -39.30 -0.40 -0.92 16 6 C 0.23 2.23 7.79 -156.04 -1.22 1.01 16 7 N -0.47 -5.40 11.01 -9.35 -0.10 -5.50 16 8 C 0.01 0.11 6.94 -83.45 -0.58 -0.47 16 9 C 0.60 8.03 7.82 -12.44 -0.10 7.93 16 10 O -0.53 -8.55 16.87 5.29 0.09 -8.47 16 11 N -0.71 -8.37 5.55 -61.33 -0.34 -8.71 16 12 C 0.12 1.51 5.93 -4.04 -0.02 1.48 16 13 C 0.05 0.61 5.80 -3.83 -0.02 0.59 16 14 N -0.67 -10.95 6.13 -115.05 -0.70 -11.66 16 15 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 16 C 0.44 10.57 7.82 -10.99 -0.09 10.49 16 17 O -0.58 -16.13 15.78 5.54 0.09 -16.04 16 18 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.49 9.68 -14.94 -0.14 -8.64 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 23 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.02 -0.17 10.78 -16.21 -0.17 -0.35 16 28 N -0.36 -3.09 2.93 -58.17 -0.17 -3.26 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.22 7.47 -51.93 -0.39 -0.16 16 31 H 0.09 0.05 8.07 -51.93 -0.42 -0.37 16 32 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 33 H 0.15 0.16 8.06 -52.49 -0.42 -0.27 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.41 4.22 8.17 -40.82 -0.33 3.88 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.20 1.47 7.78 -52.48 -0.41 1.07 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -36.21 392.54 -9.37 -45.59 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.94 Total: 13.57 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -3.85 Total: 10.82 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.65 Total: -67.67 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.18 Total: -24.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.21 -9.37 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150548708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.510 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds