Wall clock time and date at job start Wed Apr 1 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47426 * 2 1 4 4 C 1.53001 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47027 * 54.99840 * 4 3 2 6 6 N 1.46497 * 109.46961 * 294.99499 * 4 3 2 7 7 C 1.34781 * 119.99756 * 154.72930 * 6 4 3 8 8 O 1.21272 * 120.00215 * 0.27069 * 7 6 4 9 9 C 1.50703 * 119.99742 * 180.27963 * 7 6 4 10 10 C 1.50705 * 109.46676 * 179.97438 * 9 7 6 11 11 C 1.38327 * 119.96363 * 269.71913 * 10 9 7 12 12 C 1.38279 * 120.13702 * 179.77068 * 11 10 9 13 13 C 1.38118 * 120.06661 * 0.50696 * 12 11 10 14 14 C 1.38855 * 119.93407 * 359.74677 * 13 12 11 15 15 O 1.35749 * 120.07001 * 179.97438 * 14 13 12 16 16 C 1.34828 * 117.00413 * 354.49741 * 15 14 13 17 17 H 1.08002 * 119.99386 * 5.05210 * 16 15 14 18 18 C 1.38649 * 120.00623 * 185.04993 * 16 15 14 19 19 N 1.31564 * 119.99701 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00414 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47036 * 90.00405 * 20 18 16 22 22 H 1.48495 * 109.47159 * 210.00310 * 20 18 16 23 23 H 1.48505 * 109.46953 * 330.00334 * 20 18 16 24 24 C 1.38077 * 119.96554 * 89.99712 * 10 9 7 25 25 C 1.50706 * 109.46615 * 175.00073 * 4 3 2 26 26 N 1.31073 * 126.65899 * 304.67781 * 25 4 3 27 27 N 1.28842 * 107.98638 * 179.89966 * 26 25 4 28 28 N 1.28739 * 109.39774 * 0.38403 * 27 26 25 29 29 N 1.29018 * 108.81058 * 359.76048 * 28 27 26 30 30 H 0.96995 * 126.43976 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.47235 * 300.00758 * 1 2 3 32 32 H 1.09001 * 109.46693 * 59.99753 * 1 2 3 33 33 H 1.08995 * 109.47770 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47546 * 239.99600 * 2 1 3 35 35 H 1.09001 * 109.46930 * 119.99751 * 2 1 3 36 36 H 1.08998 * 109.46974 * 59.99862 * 3 2 1 37 37 H 1.09001 * 109.46863 * 299.99793 * 3 2 1 38 38 H 0.96996 * 120.00243 * 335.00690 * 6 4 3 39 39 H 1.09000 * 109.47063 * 299.99525 * 9 7 6 40 40 H 1.08998 * 109.47445 * 60.00109 * 9 7 6 41 41 H 1.08000 * 119.92824 * 359.97438 * 11 10 9 42 42 H 1.07996 * 119.96162 * 180.25565 * 12 11 10 43 43 H 1.08004 * 120.03339 * 179.72618 * 13 12 11 44 44 H 0.97003 * 119.99793 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.03635 * 359.95965 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 7 4.0578 0.8589 1.2528 7 6 5.2775 0.2874 1.2998 8 8 5.9733 0.2605 0.3068 9 6 5.7767 -0.3184 2.5862 10 6 7.1558 -0.8869 2.3718 11 6 7.3063 -2.2020 1.9703 12 6 8.5699 -2.7258 1.7679 13 6 9.6864 -1.9399 1.9763 14 6 9.5388 -0.6209 2.3845 15 8 10.6343 0.1539 2.5906 16 6 11.8369 -0.4477 2.4927 17 1 11.9006 -1.4795 2.1799 18 6 12.9918 0.2580 2.7936 19 7 12.9141 1.5147 3.1752 20 14 14.6579 -0.5759 2.6587 21 1 15.1966 -0.3865 1.2879 22 1 15.5926 0.0232 3.6449 23 1 14.5090 -2.0272 2.9360 24 6 8.2680 -0.0960 2.5819 25 6 4.0725 2.8578 -0.1232 26 7 3.7697 3.7160 -1.0665 27 7 4.3961 4.8148 -0.8208 28 7 5.0968 4.6771 0.2504 29 7 4.9239 3.4841 0.7101 30 1 5.3313 3.1089 1.5064 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6768 1.9563 -0.8900 38 1 3.5013 0.8803 2.0470 39 1 5.8160 0.4499 3.3584 40 1 5.1008 -1.1142 2.8994 41 1 6.4349 -2.8199 1.8114 42 1 8.6840 -3.7518 1.4504 43 1 10.6732 -2.3509 1.8223 44 1 13.7221 2.0083 3.3860 45 1 8.1500 0.9296 2.8991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270463546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:11 Heat of formation + Delta-G solvation = 62.872182 kcal Electronic energy + Delta-G solvation = -29404.718687 eV Core-core repulsion = 25232.369385 eV Total energy + Delta-G solvation = -4172.349303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.43945 -40.37604 -38.98995 -37.30882 -36.43471 -34.87842 -33.95501 -32.89312 -32.37589 -31.97540 -29.66237 -29.16667 -27.13843 -25.40738 -25.20340 -24.24311 -22.60853 -21.92008 -21.59991 -21.37050 -20.48796 -19.20676 -17.77610 -17.49987 -17.11464 -16.94463 -16.45991 -16.28182 -15.44136 -15.18868 -14.91996 -14.46062 -14.34304 -14.30055 -13.93271 -13.57543 -13.52598 -13.36721 -13.02988 -12.73011 -12.56045 -12.50796 -12.40011 -12.00714 -11.92530 -11.71077 -11.63333 -11.60643 -11.39612 -11.32908 -11.17267 -10.89823 -10.86611 -10.70350 -10.47383 -10.28751 -10.13263 -9.87627 -9.39143 -8.86865 -8.16571 -7.28407 -6.47288 -4.06640 1.00848 1.93264 2.00158 2.05784 2.30638 2.35095 2.63138 3.11673 3.12020 3.16940 3.66238 3.94286 4.01890 4.37666 4.39135 4.46155 4.58439 4.67107 4.84113 4.93788 4.99451 5.02979 5.05316 5.09008 5.23190 5.29362 5.32687 5.35043 5.39945 5.53796 5.64021 5.64874 5.66931 5.84270 5.84559 5.86129 6.10276 6.18420 6.24763 6.57227 6.83085 6.96681 7.01620 7.15723 7.31030 7.38354 7.75143 7.85485 7.97307 8.35945 8.98397 9.67468 10.70719 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.002529 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.265361 B =11070.290148 C =12721.607846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.230 3.770 5 H 0.129 0.871 6 N -0.744 5.744 7 C 0.506 3.494 8 O -0.500 6.500 9 C -0.092 4.092 10 C -0.038 4.038 11 C -0.196 4.196 12 C -0.073 4.073 13 C -0.229 4.229 14 C 0.154 3.846 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.177 4.177 25 C 0.185 3.815 26 N -0.297 5.297 27 N -0.070 5.070 28 N -0.083 5.083 29 N -0.393 5.393 30 H 0.455 0.545 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.408 0.592 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.870 -4.303 -0.386 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.158 4.158 4 C 0.121 3.879 5 H 0.146 0.854 6 N -0.400 5.400 7 C 0.293 3.707 8 O -0.371 6.371 9 C -0.132 4.132 10 C -0.039 4.039 11 C -0.215 4.215 12 C -0.092 4.092 13 C -0.248 4.248 14 C 0.101 3.899 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.196 4.196 25 C -0.097 4.097 26 N -0.148 5.148 27 N -0.065 5.065 28 N -0.070 5.070 29 N -0.122 5.122 30 H 0.303 0.697 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.243 0.757 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.090 -2.556 -1.762 23.298 hybrid contribution 1.043 -1.411 1.266 2.164 sum -22.047 -3.967 -0.496 22.406 Atomic orbital electron populations 1.21759 0.95215 1.01981 1.02050 1.21523 0.96285 0.95229 1.03036 1.21926 0.90233 0.98932 1.04720 1.19401 0.95082 0.83229 0.90196 0.85387 1.46336 1.19268 1.61294 1.13133 1.21180 0.80344 0.77621 0.91552 1.90839 1.55032 1.54965 1.36308 1.20610 0.96330 1.01664 0.94600 1.18598 0.91453 0.93853 0.99993 1.20334 0.96565 0.95173 1.09460 1.20693 0.92331 0.98392 0.97738 1.21201 0.99344 0.95006 1.09267 1.19272 0.88335 0.89872 0.92439 1.83970 1.12025 1.35051 1.77109 1.21315 0.80421 0.97738 1.47347 0.89078 1.25289 0.99176 0.95787 0.96256 1.70039 1.29596 1.08314 1.41821 0.85713 0.80215 0.79019 0.78499 1.19852 1.20226 1.19183 1.19904 0.89852 0.99812 1.10033 1.26659 0.93889 0.99826 0.89318 1.74962 1.21536 0.97575 1.20736 1.78632 1.04950 1.16144 1.06824 1.78922 1.19206 0.99872 1.08965 1.46102 1.32480 1.09784 1.23862 0.69669 0.92688 0.92431 0.92433 0.91227 0.91431 0.90797 0.88559 0.75671 0.88031 0.87758 0.87871 0.87404 0.85559 0.92003 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.53 5.82 -26.73 -0.16 -0.69 16 3 C -0.12 -0.59 4.73 -26.73 -0.13 -0.72 16 4 C 0.23 1.73 2.51 -69.08 -0.17 1.56 16 5 H 0.13 1.18 7.57 -51.93 -0.39 0.78 16 6 N -0.74 -4.56 4.06 -54.93 -0.22 -4.79 16 7 C 0.51 5.30 7.52 -10.98 -0.08 5.21 16 8 O -0.50 -8.00 15.69 5.56 0.09 -7.91 16 9 C -0.09 -0.92 5.83 -29.03 -0.17 -1.09 16 10 C -0.04 -0.62 4.37 -104.65 -0.46 -1.07 16 11 C -0.20 -3.21 9.70 -39.53 -0.38 -3.60 16 12 C -0.07 -1.33 10.04 -39.61 -0.40 -1.72 16 13 C -0.23 -4.96 9.17 -39.40 -0.36 -5.32 16 14 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.18 -5.07 9.76 0.06 0.00 -5.07 16 16 C -0.39 -10.96 9.49 30.88 0.29 -10.67 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 20 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 24 C -0.18 -3.56 9.65 -39.39 -0.38 -3.94 16 25 C 0.19 1.99 7.40 -155.43 -1.15 0.84 16 26 N -0.30 -3.98 12.33 32.70 0.40 -3.57 16 27 N -0.07 -1.06 13.43 60.35 0.81 -0.25 16 28 N -0.08 -1.17 13.48 60.35 0.81 -0.35 16 29 N -0.39 -4.37 6.87 32.67 0.22 -4.14 16 30 H 0.46 3.99 8.34 -190.94 -1.59 2.40 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.26 7.75 -51.93 -0.40 -0.15 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 0.56 8.12 -51.93 -0.42 0.13 16 38 H 0.41 1.09 8.60 -40.82 -0.35 0.74 16 39 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.10 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -36.43 389.03 -6.91 -43.33 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.09 Total: 2.95 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.53 Total: -17.03 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 2.79 Total: -37.70 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.43 -6.91 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270463546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.205 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds