Wall clock time and date at job start Wed Apr 1 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47426 * 2 1 4 4 C 1.53001 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47027 * 54.99840 * 4 3 2 6 6 N 1.46497 * 109.46961 * 294.99499 * 4 3 2 7 7 C 1.34781 * 119.99756 * 154.72930 * 6 4 3 8 8 O 1.21272 * 120.00215 * 0.27069 * 7 6 4 9 9 C 1.50703 * 119.99742 * 180.27963 * 7 6 4 10 10 C 1.50705 * 109.46676 * 179.97438 * 9 7 6 11 11 C 1.38327 * 119.96363 * 269.71913 * 10 9 7 12 12 C 1.38279 * 120.13702 * 179.77068 * 11 10 9 13 13 C 1.38118 * 120.06661 * 0.50696 * 12 11 10 14 14 C 1.38855 * 119.93407 * 359.74677 * 13 12 11 15 15 O 1.35749 * 120.07001 * 179.97438 * 14 13 12 16 16 C 1.34828 * 117.00413 * 354.49741 * 15 14 13 17 17 H 1.08002 * 119.99386 * 5.05210 * 16 15 14 18 18 C 1.38649 * 120.00623 * 185.04993 * 16 15 14 19 19 N 1.31564 * 119.99701 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00414 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47036 * 90.00405 * 20 18 16 22 22 H 1.48495 * 109.47159 * 210.00310 * 20 18 16 23 23 H 1.48505 * 109.46953 * 330.00334 * 20 18 16 24 24 C 1.38077 * 119.96554 * 89.99712 * 10 9 7 25 25 C 1.50706 * 109.46615 * 175.00073 * 4 3 2 26 26 N 1.31073 * 126.65899 * 304.67781 * 25 4 3 27 27 N 1.28842 * 107.98638 * 179.89966 * 26 25 4 28 28 N 1.28739 * 109.39774 * 0.38403 * 27 26 25 29 29 N 1.29018 * 108.81058 * 359.76048 * 28 27 26 30 30 H 0.96995 * 126.43976 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.47235 * 300.00758 * 1 2 3 32 32 H 1.09001 * 109.46693 * 59.99753 * 1 2 3 33 33 H 1.08995 * 109.47770 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47546 * 239.99600 * 2 1 3 35 35 H 1.09001 * 109.46930 * 119.99751 * 2 1 3 36 36 H 1.08998 * 109.46974 * 59.99862 * 3 2 1 37 37 H 1.09001 * 109.46863 * 299.99793 * 3 2 1 38 38 H 0.96996 * 120.00243 * 335.00690 * 6 4 3 39 39 H 1.09000 * 109.47063 * 299.99525 * 9 7 6 40 40 H 1.08998 * 109.47445 * 60.00109 * 9 7 6 41 41 H 1.08000 * 119.92824 * 359.97438 * 11 10 9 42 42 H 1.07996 * 119.96162 * 180.25565 * 12 11 10 43 43 H 1.08004 * 120.03339 * 179.72618 * 13 12 11 44 44 H 0.97003 * 119.99793 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.03635 * 359.95965 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 7 4.0578 0.8589 1.2528 7 6 5.2775 0.2874 1.2998 8 8 5.9733 0.2605 0.3068 9 6 5.7767 -0.3184 2.5862 10 6 7.1558 -0.8869 2.3718 11 6 7.3063 -2.2020 1.9703 12 6 8.5699 -2.7258 1.7679 13 6 9.6864 -1.9399 1.9763 14 6 9.5388 -0.6209 2.3845 15 8 10.6343 0.1539 2.5906 16 6 11.8369 -0.4477 2.4927 17 1 11.9006 -1.4795 2.1799 18 6 12.9918 0.2580 2.7936 19 7 12.9141 1.5147 3.1752 20 14 14.6579 -0.5759 2.6587 21 1 15.1966 -0.3865 1.2879 22 1 15.5926 0.0232 3.6449 23 1 14.5090 -2.0272 2.9360 24 6 8.2680 -0.0960 2.5819 25 6 4.0725 2.8578 -0.1232 26 7 3.7697 3.7160 -1.0665 27 7 4.3961 4.8148 -0.8208 28 7 5.0968 4.6771 0.2504 29 7 4.9239 3.4841 0.7101 30 1 5.3313 3.1089 1.5064 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6768 1.9563 -0.8900 38 1 3.5013 0.8803 2.0470 39 1 5.8160 0.4499 3.3584 40 1 5.1008 -1.1142 2.8994 41 1 6.4349 -2.8199 1.8114 42 1 8.6840 -3.7518 1.4504 43 1 10.6732 -2.3509 1.8223 44 1 13.7221 2.0083 3.3860 45 1 8.1500 0.9296 2.8991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270463546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:10 Heat of formation + Delta-G solvation = 35.989078 kcal Electronic energy + Delta-G solvation = -29405.884426 eV Core-core repulsion = 25232.369385 eV Total energy + Delta-G solvation = -4173.515041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.43192 -41.33319 -40.54622 -38.43862 -37.66755 -35.84627 -34.54762 -34.35479 -33.83212 -33.19420 -30.93485 -30.22381 -28.28169 -27.24312 -26.00188 -25.27481 -23.54821 -23.22034 -22.77296 -21.96278 -21.64813 -20.14205 -19.51159 -18.82324 -18.32536 -17.91696 -17.32473 -17.07837 -16.74687 -16.45130 -16.12437 -15.74870 -15.58593 -15.50401 -15.00771 -14.85439 -14.53924 -14.32639 -14.28877 -13.99862 -13.63216 -13.57930 -13.43351 -12.98963 -12.86912 -12.78483 -12.70369 -12.53946 -12.48071 -12.40009 -12.33658 -12.21769 -12.11731 -11.88868 -11.51270 -11.22338 -11.20485 -11.08580 -10.81594 -10.62598 -9.63993 -8.97475 -8.49049 -6.17189 0.05443 0.50892 0.76646 0.97859 1.19970 1.32178 1.41418 1.49689 1.51354 1.84187 2.15687 2.81310 2.90922 3.15824 3.30080 3.44140 3.68287 3.76844 3.93153 4.07627 4.08282 4.11915 4.27589 4.32784 4.35087 4.40306 4.45879 4.58324 4.66170 4.68880 4.74945 4.79890 4.95957 5.05480 5.06555 5.11494 5.14661 5.31821 5.34070 5.35212 5.41457 5.55361 5.65239 5.72880 5.76059 6.01548 6.23812 6.39801 6.96120 7.11706 7.34265 7.77834 8.74298 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.002529 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.265361 B =11070.290148 C =12721.607846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.110 4.110 4 C 0.236 3.764 5 H 0.116 0.884 6 N -0.715 5.715 7 C 0.515 3.485 8 O -0.561 6.561 9 C -0.091 4.091 10 C -0.027 4.027 11 C -0.177 4.177 12 C -0.077 4.077 13 C -0.249 4.249 14 C 0.108 3.892 15 O -0.235 6.235 16 C -0.412 4.412 17 H 0.099 0.901 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.017 2.983 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.192 4.192 25 C 0.196 3.804 26 N -0.316 5.316 27 N -0.096 5.096 28 N -0.102 5.102 29 N -0.386 5.386 30 H 0.465 0.535 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.431 0.569 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.272 0.728 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.176 -7.053 0.417 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.149 4.149 4 C 0.126 3.874 5 H 0.134 0.866 6 N -0.372 5.372 7 C 0.303 3.697 8 O -0.437 6.437 9 C -0.130 4.130 10 C -0.028 4.028 11 C -0.195 4.195 12 C -0.094 4.094 13 C -0.269 4.269 14 C 0.058 3.942 15 O -0.142 6.142 16 C -0.488 4.488 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.175 1.175 24 C -0.211 4.211 25 C -0.086 4.086 26 N -0.167 5.167 27 N -0.091 5.091 28 N -0.090 5.090 29 N -0.117 5.117 30 H 0.315 0.685 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.271 0.729 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.130 0.870 44 H 0.081 0.919 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.499 -5.341 -0.922 27.048 hybrid contribution 1.668 -0.710 0.975 2.058 sum -24.831 -6.051 0.053 25.558 Atomic orbital electron populations 1.21756 0.94901 1.02167 1.02200 1.21504 0.96462 0.94387 1.03315 1.21904 0.87778 0.99844 1.05346 1.19521 0.96625 0.80990 0.90226 0.86611 1.46003 1.18142 1.59368 1.13685 1.21204 0.80709 0.77059 0.90742 1.90852 1.56894 1.57664 1.38329 1.20767 0.93156 1.04083 0.94989 1.19209 0.93333 0.93506 0.96743 1.21015 0.97355 0.95537 1.05631 1.21138 0.91955 0.99602 0.96751 1.21302 1.00321 0.94820 1.10417 1.19948 0.88656 0.91166 0.94394 1.83926 1.13055 1.36955 1.80279 1.21780 0.81188 0.98313 1.47554 0.88375 1.26574 1.03349 0.96472 0.95744 1.70184 1.30767 1.10323 1.44738 0.84609 0.74492 0.78492 0.78766 1.19109 1.19376 1.17536 1.20261 0.89906 1.00515 1.10416 1.27222 0.92674 1.00471 0.88199 1.74898 1.22211 0.97759 1.21835 1.78613 1.05792 1.17226 1.07476 1.78863 1.19640 1.01285 1.09169 1.46083 1.32287 1.09159 1.24159 0.68507 0.91915 0.92987 0.92246 0.92082 0.90035 0.88889 0.89353 0.72895 0.85020 0.82834 0.83074 0.84064 0.86966 0.91900 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 71.98 0.71 -0.04 16 2 C -0.12 -0.60 5.82 30.59 0.18 -0.42 16 3 C -0.11 -0.75 4.73 30.60 0.14 -0.60 16 4 C 0.24 2.93 2.51 44.25 0.11 3.04 16 5 H 0.12 1.91 7.57 -2.39 -0.02 1.89 16 6 N -0.71 -5.74 4.06 -446.10 -1.81 -7.55 16 7 C 0.51 8.77 7.52 87.66 0.66 9.43 16 8 O -0.56 -16.79 15.69 -3.01 -0.05 -16.84 16 9 C -0.09 -1.32 5.83 29.10 0.17 -1.15 16 10 C -0.03 -0.79 4.37 -19.88 -0.09 -0.88 16 11 C -0.18 -5.01 9.70 22.30 0.22 -4.79 16 12 C -0.08 -2.59 10.04 22.25 0.22 -2.36 16 13 C -0.25 -11.04 9.17 22.39 0.21 -10.84 16 14 C 0.11 5.43 6.65 22.58 0.15 5.58 16 15 O -0.24 -14.39 9.76 -22.71 -0.22 -14.61 16 16 C -0.41 -24.52 9.49 67.92 0.64 -23.88 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.50 13.67 21.61 0.30 -57.20 16 20 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 C -0.19 -7.76 9.65 22.39 0.22 -7.55 16 25 C 0.20 3.95 7.40 138.14 1.02 4.98 16 26 N -0.32 -8.34 12.33 -50.45 -0.62 -8.96 16 27 N -0.10 -2.92 13.43 37.01 0.50 -2.42 16 28 N -0.10 -2.89 13.48 37.02 0.50 -2.39 16 29 N -0.39 -8.20 6.87 -50.54 -0.35 -8.55 16 30 H 0.46 7.44 8.34 -220.42 -1.84 5.60 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.21 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.20 7.75 -2.39 -0.02 0.18 16 36 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 38 H 0.43 -0.20 8.60 -92.71 -0.80 -1.00 16 39 H 0.13 1.25 8.08 -2.39 -0.02 1.23 16 40 H 0.15 0.86 8.08 -2.39 -0.02 0.84 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.11 5.13 5.64 -2.91 -0.02 5.12 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -89.50 389.03 3.72 -85.77 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -1.58 Total: 17.38 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 5.03 Total: -30.42 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.49 Total: -87.07 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.27 Total: -31.45 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -89.50 3.72 -85.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270463546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.763 kcal (2) G-P(sol) polarization free energy of solvation -89.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds