Wall clock time and date at job start Wed Apr 1 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.46888 * 2 1 4 4 N 1.30833 * 125.95932 * 264.99760 * 3 2 1 5 5 C 1.33246 * 109.82673 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.52723 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46711 * 15.00327 * 6 5 4 8 8 C 1.52996 * 109.47175 * 255.00265 * 6 5 4 9 9 N 1.46494 * 109.47168 * 134.99993 * 6 5 4 10 10 C 1.34776 * 120.00151 * 205.00619 * 9 6 5 11 11 O 1.21589 * 120.00185 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99951 * 180.02562 * 10 9 6 13 13 C 1.39942 * 120.00028 * 175.49040 * 12 10 9 14 14 C 1.38954 * 120.03784 * 214.85029 * 13 12 10 15 15 C 1.38163 * 120.06747 * 179.71940 * 14 13 12 16 16 C 1.38163 * 120.13670 * 0.55527 * 15 14 13 17 17 C 1.38908 * 120.07342 * 359.72072 * 16 15 14 18 18 O 1.35748 * 120.03770 * 179.97438 * 17 16 15 19 19 C 1.34833 * 116.99789 * 5.36498 * 18 17 16 20 20 H 1.07996 * 120.00232 * 354.97033 * 19 18 17 21 21 C 1.38651 * 120.00147 * 174.96298 * 19 18 17 22 22 N 1.31570 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47237 * 90.00483 * 23 21 19 25 25 H 1.48502 * 109.47107 * 210.00277 * 23 21 19 26 26 H 1.48499 * 109.47328 * 330.00288 * 23 21 19 27 27 C 1.38707 * 120.03434 * 35.12442 * 13 12 10 28 28 N 1.30714 * 108.94528 * 0.26425 * 5 4 3 29 29 N 1.34426 * 125.96065 * 84.97822 * 3 2 1 30 30 H 0.96998 * 126.82522 * 0.02562 * 29 3 2 31 31 H 1.08999 * 109.47657 * 299.99959 * 1 2 3 32 32 H 1.08994 * 109.47242 * 60.00053 * 1 2 3 33 33 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47146 * 239.99950 * 2 1 3 35 35 H 1.09002 * 109.46949 * 119.99799 * 2 1 3 36 36 H 1.08998 * 109.47478 * 59.99912 * 8 6 5 37 37 H 1.09001 * 109.47008 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47351 * 299.99669 * 8 6 5 39 39 H 0.96998 * 119.99829 * 25.00226 * 9 6 5 40 40 H 0.96998 * 119.99927 * 355.21259 * 12 10 9 41 41 H 1.08005 * 119.96385 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.93054 * 180.28052 * 15 14 13 43 43 H 1.08006 * 119.96149 * 179.70461 * 16 15 14 44 44 H 0.96993 * 119.99596 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.06859 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3754 2.1144 -1.0550 5 6 2.7710 3.3321 -0.6862 6 6 3.2422 4.4192 -1.6174 7 1 2.9653 4.1661 -2.6409 8 6 4.7632 4.5518 -1.5185 9 7 2.6159 5.6892 -1.2420 10 6 2.4613 6.6622 -2.1617 11 8 2.8421 6.4862 -3.3029 12 7 1.8855 7.8308 -1.8161 13 6 1.8101 8.8752 -2.7445 14 6 1.9248 10.1932 -2.3196 15 6 1.8562 11.2246 -3.2364 16 6 1.6620 10.9497 -4.5764 17 6 1.5408 9.6345 -5.0068 18 8 1.3495 9.3653 -6.3235 19 6 1.3974 10.4097 -7.1750 20 1 1.5002 11.4143 -6.7922 21 6 1.3149 10.1938 -8.5421 22 7 1.1893 8.9700 -9.0084 23 14 1.3820 11.6405 -9.7219 24 1 2.7933 11.9057 -10.1001 25 1 0.5944 11.3227 -10.9401 26 1 0.8116 12.8431 -9.0634 27 6 1.6150 8.5961 -4.0891 28 7 2.6901 3.4288 0.6149 29 7 2.2056 2.1968 1.0839 30 1 2.0337 1.9531 2.0069 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.2292 3.6069 -1.7979 37 1 5.1040 5.3378 -2.1924 38 1 5.0401 4.8049 -0.4951 39 1 2.3123 5.8298 -0.3315 40 1 1.5199 7.9465 -0.9252 41 1 2.0719 10.4115 -1.2721 42 1 1.9502 12.2479 -2.9043 43 1 1.6040 11.7584 -5.2900 44 1 1.1312 8.8190 -9.9648 45 1 1.5215 7.5727 -4.4213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270682631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:00 Heat of formation + Delta-G solvation = 59.342035 kcal Electronic energy + Delta-G solvation = -28756.091214 eV Core-core repulsion = 24583.588833 eV Total energy + Delta-G solvation = -4172.502381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.62238 -40.30267 -38.69615 -36.88007 -35.79587 -34.40748 -34.00251 -32.86127 -32.15983 -31.03598 -29.89243 -29.22503 -28.05751 -25.23394 -24.94385 -24.62697 -22.53892 -21.52330 -21.17992 -20.59138 -20.36404 -18.70624 -18.15677 -17.91643 -17.01402 -16.27528 -16.13474 -15.25699 -15.20526 -14.99264 -14.95891 -14.68701 -14.49865 -14.12174 -14.00997 -13.64809 -13.47292 -13.37387 -12.88811 -12.74692 -12.73218 -12.39531 -12.18238 -12.11479 -11.68666 -11.67001 -11.57419 -11.40571 -11.13285 -10.94670 -10.70313 -10.50905 -10.41745 -10.39718 -9.98354 -9.85381 -9.62187 -9.22795 -9.09881 -8.73251 -7.57760 -7.08938 -6.33598 -3.92642 1.13435 2.14797 2.16416 2.34911 2.44237 2.78141 3.19543 3.20775 3.25404 3.38062 3.51887 4.03878 4.08126 4.21771 4.32397 4.59123 4.68054 4.69329 4.91712 5.07315 5.18645 5.20913 5.23389 5.37766 5.41619 5.52407 5.62272 5.70752 5.76260 5.80520 5.92149 5.93638 6.14174 6.18149 6.31813 6.35717 6.49743 6.59038 6.63835 6.92245 7.11957 7.15779 7.32078 7.43634 7.58757 7.68425 7.91077 8.09831 8.12166 8.74211 9.11221 9.83863 10.84449 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002060 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.804630 B =13591.934781 C =14633.455675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.288 3.712 4 N -0.525 5.525 5 C 0.229 3.771 6 C 0.258 3.742 7 H 0.120 0.880 8 C -0.157 4.157 9 N -0.740 5.740 10 C 0.703 3.297 11 O -0.555 6.555 12 N -0.680 5.680 13 C 0.193 3.807 14 C -0.237 4.237 15 C -0.059 4.059 16 C -0.247 4.247 17 C 0.167 3.833 18 O -0.174 6.174 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.185 4.185 28 N -0.308 5.308 29 N -0.481 5.481 30 H 0.440 0.560 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.398 0.602 40 H 0.401 0.599 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.269 0.731 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 -15.074 23.621 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 C 0.010 3.990 4 N -0.254 5.254 5 C -0.055 4.055 6 C 0.150 3.850 7 H 0.138 0.862 8 C -0.217 4.217 9 N -0.397 5.397 10 C 0.403 3.597 11 O -0.429 6.429 12 N -0.327 5.327 13 C 0.099 3.901 14 C -0.258 4.258 15 C -0.078 4.078 16 C -0.267 4.267 17 C 0.112 3.888 18 O -0.077 6.077 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.207 4.207 28 N -0.137 5.137 29 N -0.199 5.199 30 H 0.286 0.714 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.232 0.768 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.446 -15.057 22.211 26.872 hybrid contribution -0.433 0.555 1.161 1.357 sum 1.014 -14.502 23.371 27.524 Atomic orbital electron populations 1.21770 0.92963 1.03146 1.02989 1.20229 0.97068 0.86084 1.05336 1.24464 0.95519 0.96282 0.82767 1.70385 1.21188 1.04448 1.29360 1.24259 0.97383 0.93785 0.90055 1.18851 0.92681 0.77130 0.96358 0.86245 1.22181 0.93113 1.03401 1.02973 1.45051 1.66849 1.14787 1.13047 1.15857 0.78980 0.80139 0.84713 1.91037 1.54527 1.79588 1.17792 1.42426 1.61625 1.12499 1.16175 1.16940 0.99365 0.85673 0.88145 1.20238 1.15657 0.90965 0.98931 1.20472 0.97336 0.97442 0.92545 1.21168 1.12482 0.96831 0.96193 1.19144 0.91654 0.92127 0.85852 1.83996 1.76817 1.35720 1.11156 1.21336 1.52257 0.86606 0.86492 0.89038 1.25299 0.96723 0.98044 0.96572 1.70065 1.45646 1.19682 1.14192 0.85714 0.78581 0.79775 0.79334 1.19926 1.20349 1.19242 1.20213 1.10341 0.99473 0.90660 1.77924 1.22258 1.01250 1.12248 1.47966 1.51301 1.10145 1.10460 0.71430 0.92584 0.91391 0.90798 0.87551 0.89267 0.91226 0.90158 0.92089 0.76780 0.76439 0.87491 0.87119 0.85527 0.92095 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.22 16 2 C -0.05 -0.20 6.56 -27.89 -0.18 -0.38 16 3 C 0.29 2.36 7.49 -155.70 -1.17 1.19 16 4 N -0.53 -6.23 11.19 -8.16 -0.09 -6.32 16 5 C 0.23 2.74 6.94 -156.85 -1.09 1.66 16 6 C 0.26 3.31 3.12 -69.09 -0.22 3.09 16 7 H 0.12 1.78 7.58 -51.93 -0.39 1.39 16 8 C -0.16 -1.81 9.47 37.16 0.35 -1.46 16 9 N -0.74 -9.42 5.07 -59.82 -0.30 -9.72 16 10 C 0.70 11.73 8.37 -86.92 -0.73 11.00 16 11 O -0.56 -11.93 13.44 5.29 0.07 -11.86 16 12 N -0.68 -10.50 5.34 -14.24 -0.08 -10.58 16 13 C 0.19 3.75 6.30 -83.72 -0.53 3.22 16 14 C -0.24 -4.19 9.96 -39.34 -0.39 -4.58 16 15 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 16 C -0.25 -5.59 9.17 -39.36 -0.36 -5.95 16 17 C 0.17 4.33 6.64 -39.13 -0.26 4.07 16 18 O -0.17 -5.26 9.76 0.05 0.00 -5.26 16 19 C -0.39 -11.36 9.49 30.88 0.29 -11.07 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -26.34 13.67 55.48 0.76 -25.58 16 23 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 C -0.19 -4.43 8.64 -39.21 -0.34 -4.77 16 28 N -0.31 -3.25 12.47 32.42 0.40 -2.84 16 29 N -0.48 -3.54 7.45 32.62 0.24 -3.29 16 30 H 0.44 1.57 8.96 -182.34 -1.63 -0.06 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.40 4.13 8.35 -40.82 -0.34 3.79 16 40 H 0.40 4.51 8.84 -40.82 -0.36 4.14 16 41 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.84 5.63 -52.48 -0.30 2.54 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.14 3.51 6.23 -52.49 -0.33 3.19 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -37.82 387.17 -9.91 -47.73 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.99 Total: 10.42 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -4.74 Total: -4.72 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.93 Total: -58.34 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.07 Total: -17.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.82 -9.91 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270682631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.074 kcal (2) G-P(sol) polarization free energy of solvation -37.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds