Wall clock time and date at job start Wed Apr 1 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.46888 * 2 1 4 4 N 1.30833 * 125.95932 * 264.99760 * 3 2 1 5 5 C 1.33246 * 109.82673 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.52723 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46711 * 15.00327 * 6 5 4 8 8 C 1.52996 * 109.47175 * 255.00265 * 6 5 4 9 9 N 1.46494 * 109.47168 * 134.99993 * 6 5 4 10 10 C 1.34776 * 120.00151 * 205.00619 * 9 6 5 11 11 O 1.21589 * 120.00185 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99951 * 180.02562 * 10 9 6 13 13 C 1.39942 * 120.00028 * 175.49040 * 12 10 9 14 14 C 1.38954 * 120.03784 * 214.85029 * 13 12 10 15 15 C 1.38163 * 120.06747 * 179.71940 * 14 13 12 16 16 C 1.38163 * 120.13670 * 0.55527 * 15 14 13 17 17 C 1.38908 * 120.07342 * 359.72072 * 16 15 14 18 18 O 1.35748 * 120.03770 * 179.97438 * 17 16 15 19 19 C 1.34833 * 116.99789 * 5.36498 * 18 17 16 20 20 H 1.07996 * 120.00232 * 354.97033 * 19 18 17 21 21 C 1.38651 * 120.00147 * 174.96298 * 19 18 17 22 22 N 1.31570 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47237 * 90.00483 * 23 21 19 25 25 H 1.48502 * 109.47107 * 210.00277 * 23 21 19 26 26 H 1.48499 * 109.47328 * 330.00288 * 23 21 19 27 27 C 1.38707 * 120.03434 * 35.12442 * 13 12 10 28 28 N 1.30714 * 108.94528 * 0.26425 * 5 4 3 29 29 N 1.34426 * 125.96065 * 84.97822 * 3 2 1 30 30 H 0.96998 * 126.82522 * 0.02562 * 29 3 2 31 31 H 1.08999 * 109.47657 * 299.99959 * 1 2 3 32 32 H 1.08994 * 109.47242 * 60.00053 * 1 2 3 33 33 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47146 * 239.99950 * 2 1 3 35 35 H 1.09002 * 109.46949 * 119.99799 * 2 1 3 36 36 H 1.08998 * 109.47478 * 59.99912 * 8 6 5 37 37 H 1.09001 * 109.47008 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47351 * 299.99669 * 8 6 5 39 39 H 0.96998 * 119.99829 * 25.00226 * 9 6 5 40 40 H 0.96998 * 119.99927 * 355.21259 * 12 10 9 41 41 H 1.08005 * 119.96385 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.93054 * 180.28052 * 15 14 13 43 43 H 1.08006 * 119.96149 * 179.70461 * 16 15 14 44 44 H 0.96993 * 119.99596 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.06859 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3754 2.1144 -1.0550 5 6 2.7710 3.3321 -0.6862 6 6 3.2422 4.4192 -1.6174 7 1 2.9653 4.1661 -2.6409 8 6 4.7632 4.5518 -1.5185 9 7 2.6159 5.6892 -1.2420 10 6 2.4613 6.6622 -2.1617 11 8 2.8421 6.4862 -3.3029 12 7 1.8855 7.8308 -1.8161 13 6 1.8101 8.8752 -2.7445 14 6 1.9248 10.1932 -2.3196 15 6 1.8562 11.2246 -3.2364 16 6 1.6620 10.9497 -4.5764 17 6 1.5408 9.6345 -5.0068 18 8 1.3495 9.3653 -6.3235 19 6 1.3974 10.4097 -7.1750 20 1 1.5002 11.4143 -6.7922 21 6 1.3149 10.1938 -8.5421 22 7 1.1893 8.9700 -9.0084 23 14 1.3820 11.6405 -9.7219 24 1 2.7933 11.9057 -10.1001 25 1 0.5944 11.3227 -10.9401 26 1 0.8116 12.8431 -9.0634 27 6 1.6150 8.5961 -4.0891 28 7 2.6901 3.4288 0.6149 29 7 2.2056 2.1968 1.0839 30 1 2.0337 1.9531 2.0069 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.2292 3.6069 -1.7979 37 1 5.1040 5.3378 -2.1924 38 1 5.0401 4.8049 -0.4951 39 1 2.3123 5.8298 -0.3315 40 1 1.5199 7.9465 -0.9252 41 1 2.0719 10.4115 -1.2721 42 1 1.9502 12.2479 -2.9043 43 1 1.6040 11.7584 -5.2900 44 1 1.1312 8.8190 -9.9648 45 1 1.5215 7.5727 -4.4213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270682631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:59 Heat of formation + Delta-G solvation = 30.360324 kcal Electronic energy + Delta-G solvation = -28757.347955 eV Core-core repulsion = 24583.588833 eV Total energy + Delta-G solvation = -4173.759122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.38253 -41.74743 -40.46847 -38.49941 -37.04477 -35.57005 -34.98944 -34.23786 -33.68531 -32.09451 -31.01328 -30.63568 -29.61742 -27.30638 -25.74599 -25.33425 -24.01029 -23.11526 -22.24007 -21.69252 -21.44851 -19.94985 -19.89009 -19.00516 -18.65725 -17.61987 -16.91758 -16.74454 -16.62410 -16.44788 -16.18018 -15.88550 -15.60641 -15.54497 -15.43168 -15.05480 -14.79172 -14.48990 -14.24058 -14.21221 -13.60156 -13.55218 -13.29839 -13.16639 -13.10861 -12.93471 -12.67586 -12.56587 -12.49803 -12.34269 -12.09821 -12.01209 -11.58962 -11.31433 -11.28489 -11.21767 -10.95575 -10.74805 -10.67481 -10.38570 -9.28900 -8.83639 -8.43711 -6.13300 0.38546 0.50250 0.74429 1.28145 1.35900 1.46723 1.54811 1.55770 1.74945 2.00470 2.20481 2.72412 2.86216 3.04833 3.21076 3.43224 3.60774 3.68061 4.06032 4.10212 4.18577 4.26466 4.33185 4.40000 4.45998 4.52758 4.65564 4.71222 4.75868 4.78919 4.93554 5.00568 5.03543 5.05474 5.11493 5.14109 5.18383 5.26351 5.32252 5.40732 5.49814 5.67298 5.77866 5.89783 6.06716 6.10675 6.24490 6.88075 6.95788 6.99746 7.41805 7.83719 8.80373 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002060 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.804630 B =13591.934781 C =14633.455675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.295 3.705 4 N -0.568 5.568 5 C 0.216 3.784 6 C 0.258 3.742 7 H 0.089 0.911 8 C -0.147 4.147 9 N -0.716 5.716 10 C 0.701 3.299 11 O -0.608 6.608 12 N -0.663 5.663 13 C 0.201 3.799 14 C -0.203 4.203 15 C -0.048 4.048 16 C -0.255 4.255 17 C 0.126 3.874 18 O -0.236 6.236 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.030 4.030 22 N -0.926 5.926 23 Si 1.025 2.975 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.247 1.247 27 C -0.213 4.213 28 N -0.313 5.313 29 N -0.464 5.464 30 H 0.459 0.541 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.414 0.586 40 H 0.427 0.573 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.124 0.876 44 H 0.272 0.728 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -13.789 28.146 31.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C 0.017 3.983 4 N -0.297 5.297 5 C -0.067 4.067 6 C 0.150 3.850 7 H 0.107 0.893 8 C -0.206 4.206 9 N -0.374 5.374 10 C 0.401 3.599 11 O -0.486 6.486 12 N -0.313 5.313 13 C 0.106 3.894 14 C -0.224 4.224 15 C -0.066 4.066 16 C -0.275 4.275 17 C 0.075 3.925 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.125 0.875 21 C -0.226 4.226 22 N -0.564 5.564 23 Si 0.843 3.157 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.171 1.171 27 C -0.235 4.235 28 N -0.144 5.144 29 N -0.184 5.184 30 H 0.308 0.692 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.266 0.734 41 H 0.182 0.818 42 H 0.179 0.821 43 H 0.142 0.858 44 H 0.081 0.919 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.647 -13.791 26.913 30.285 hybrid contribution -0.494 0.009 0.192 0.530 sum 1.152 -13.783 27.104 30.429 Atomic orbital electron populations 1.21759 0.92681 1.04161 1.01987 1.20467 0.97068 0.83747 1.07107 1.25124 0.93910 0.97297 0.81963 1.70344 1.22827 1.04982 1.31576 1.23897 0.98712 0.93771 0.90369 1.18724 0.93528 0.77414 0.95382 0.89345 1.22071 0.92079 1.03183 1.03275 1.44794 1.65781 1.13826 1.12997 1.16038 0.78674 0.80800 0.84367 1.91032 1.56615 1.80572 1.20369 1.42183 1.61214 1.11294 1.16562 1.17069 0.97613 0.87778 0.86945 1.20857 1.10886 0.89114 1.01509 1.21023 0.94724 1.00298 0.90551 1.21325 1.12770 0.95022 0.98388 1.19677 0.93580 0.94346 0.84911 1.83964 1.79981 1.37050 1.13252 1.21924 1.52482 0.87244 0.87201 0.87542 1.26742 0.95947 1.01594 0.98364 1.70241 1.48708 1.22785 1.14686 0.84513 0.79070 0.75820 0.76281 1.18889 1.19692 1.17067 1.20207 1.12700 0.97595 0.92949 1.77810 1.22395 1.02838 1.11312 1.47887 1.50176 1.08974 1.11392 0.69178 0.91870 0.94077 0.88798 0.87703 0.85555 0.90347 0.92187 0.90562 0.74902 0.73394 0.81836 0.82119 0.85840 0.91949 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 71.98 0.71 -0.18 16 2 C -0.04 -0.27 6.56 29.85 0.20 -0.07 16 3 C 0.30 4.39 7.49 138.23 1.04 5.43 16 4 N -0.57 -13.50 11.19 -179.73 -2.01 -15.51 16 5 C 0.22 5.14 6.94 138.63 0.96 6.11 16 6 C 0.26 6.85 3.12 44.25 0.14 6.98 16 7 H 0.09 2.91 7.58 -2.39 -0.02 2.89 16 8 C -0.15 -3.44 9.47 71.98 0.68 -2.76 16 9 N -0.72 -18.08 5.07 -461.42 -2.34 -20.42 16 10 C 0.70 23.74 8.37 179.05 1.50 25.24 16 11 O -0.61 -27.93 13.44 -3.99 -0.05 -27.98 16 12 N -0.66 -19.38 5.34 -317.23 -1.69 -21.07 16 13 C 0.20 7.57 6.30 38.13 0.24 7.81 16 14 C -0.20 -6.22 9.96 22.42 0.22 -6.00 16 15 C -0.05 -1.59 10.03 22.23 0.22 -1.37 16 16 C -0.26 -11.51 9.17 22.41 0.21 -11.31 16 17 C 0.13 6.90 6.64 22.56 0.15 7.05 16 18 O -0.24 -15.49 9.76 -22.75 -0.22 -15.72 16 19 C -0.41 -25.43 9.49 67.92 0.64 -24.78 16 20 H 0.11 5.90 5.20 -2.91 -0.02 5.89 16 21 C -0.03 -1.80 5.49 84.83 0.47 -1.33 16 22 N -0.93 -60.65 13.67 21.61 0.30 -60.36 16 23 Si 1.02 44.93 29.55 68.60 2.03 46.96 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 27 C -0.21 -10.72 8.64 22.51 0.19 -10.52 16 28 N -0.31 -6.11 12.47 -51.33 -0.64 -6.75 16 29 N -0.46 -5.78 7.45 -50.71 -0.38 -6.16 16 30 H 0.46 1.85 8.96 -213.10 -1.91 -0.06 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 39 H 0.41 7.86 8.35 -92.71 -0.77 7.09 16 40 H 0.43 8.02 8.84 -92.71 -0.82 7.20 16 41 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 42 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.12 5.55 5.63 -2.91 -0.02 5.54 16 44 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 45 H 0.10 5.72 6.23 -2.91 -0.02 5.70 16 Total: -1.00 -93.87 387.17 0.13 -93.74 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -2.42 Total: 32.96 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 7.57 Total: 0.30 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -6.77 Total: -130.27 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.28 Total: -43.70 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -93.87 0.13 -93.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270682631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.098 kcal (2) G-P(sol) polarization free energy of solvation -93.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds