Wall clock time and date at job start Wed Apr 1 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47573 * 2 1 4 4 N 1.46502 * 109.47398 * 177.58501 * 3 2 1 5 5 C 1.37102 * 119.99484 * 93.46196 * 4 3 2 6 6 H 1.08003 * 119.99648 * 169.71333 * 5 4 3 7 7 C 1.38946 * 120.00013 * 349.71045 * 5 4 3 8 8 N 1.31408 * 120.00424 * 342.22128 * 7 5 4 9 9 Si 1.86811 * 119.99585 * 162.21540 * 7 5 4 10 10 H 1.48501 * 109.46660 * 90.00512 * 9 7 5 11 11 H 1.48496 * 109.46912 * 209.99874 * 9 7 5 12 12 H 1.48499 * 109.47136 * 330.00257 * 9 7 5 13 13 C 1.34771 * 120.00407 * 273.46738 * 4 3 2 14 14 O 1.21284 * 120.00159 * 185.38237 * 13 4 3 15 15 C 1.50704 * 119.99745 * 5.37384 * 13 4 3 16 16 H 1.09000 * 110.62816 * 19.14467 * 15 13 4 17 17 C 1.55137 * 110.70710 * 255.84358 * 15 13 4 18 18 C 1.54910 * 101.64982 * 205.96475 * 17 15 13 19 19 N 1.47843 * 104.79609 * 37.07706 * 18 17 15 20 20 C 1.39341 * 110.99640 * 213.63390 * 19 18 17 21 21 C 1.39104 * 119.93336 * 61.07095 * 20 19 18 22 22 C 1.37690 * 120.10237 * 180.27535 * 21 20 19 23 23 C 1.39787 * 119.96447 * 359.47138 * 22 21 20 24 24 C 1.43196 * 120.06855 * 180.25370 * 23 22 21 25 25 N 9.70862 * 87.51975 * 112.56267 * 2 1 3 26 26 C 1.39822 * 119.86054 * 0.27651 * 23 22 21 27 27 C 1.37830 * 119.89561 * 0.02562 * 26 23 22 28 28 F 1.35101 * 119.97985 * 180.02562 * 27 26 23 29 29 C 1.47441 * 108.56611 * 335.89759 * 19 18 17 30 30 H 1.09000 * 109.46521 * 300.00081 * 1 2 3 31 31 H 1.09000 * 109.46924 * 59.99593 * 1 2 3 32 32 H 1.08994 * 109.47530 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46883 * 240.00015 * 2 1 3 34 34 H 1.09000 * 109.47427 * 120.00568 * 2 1 3 35 35 H 1.09001 * 109.46625 * 57.58810 * 3 2 1 36 36 H 1.09002 * 109.47498 * 297.58876 * 3 2 1 37 37 H 0.96995 * 120.00321 * 180.02562 * 8 7 5 38 38 H 1.08998 * 110.99213 * 324.05488 * 17 15 13 39 39 H 1.08994 * 110.98822 * 87.84076 * 17 15 13 40 40 H 1.09003 * 110.37808 * 278.24255 * 18 17 15 41 41 H 1.09007 * 110.36940 * 155.90310 * 18 17 15 42 42 H 1.07997 * 119.94592 * 0.04811 * 21 20 19 43 43 H 1.08006 * 120.01681 * 179.74106 * 22 21 20 44 44 H 1.07996 * 120.05098 * 179.97438 * 26 23 22 45 45 H 1.09001 * 109.88930 * 120.40029 * 29 19 18 46 46 H 1.09006 * 109.88968 * 241.58927 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5039 1.4428 0.0582 5 6 4.2359 1.4980 -1.0998 6 1 5.3020 1.6655 -1.0572 7 6 3.6062 1.3384 -2.3280 8 7 2.4100 0.7978 -2.3878 9 14 4.4601 1.8927 -3.8944 10 1 5.2659 0.7719 -4.4419 11 1 3.4421 2.3049 -4.8938 12 1 5.3511 3.0417 -3.5924 13 6 4.1311 1.3887 1.2499 14 8 5.3386 1.4873 1.3048 15 6 3.3317 1.2060 2.5143 16 1 2.3436 0.8045 2.2894 17 6 3.2206 2.5441 3.2913 18 6 3.0187 2.0464 4.7443 19 7 3.8758 0.8469 4.8550 20 6 3.3042 -0.0986 5.7041 21 6 2.0642 -0.6486 5.3960 22 6 1.4935 -1.5789 6.2355 23 6 2.1660 -1.9797 7.3936 24 6 1.5771 -2.9511 8.2654 25 7 1.1098 -3.7216 8.9571 26 6 3.4148 -1.4298 7.6991 27 6 3.9778 -0.4944 6.8579 28 9 5.1845 0.0377 7.1512 29 6 4.0802 0.2898 3.5053 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6419 1.9685 0.8676 36 1 1.7126 1.9437 -0.9108 37 1 1.9705 0.6861 -3.2453 38 1 4.1384 3.1252 3.2016 39 1 2.3605 3.1218 2.9529 40 1 1.9745 1.7837 4.9139 41 1 3.3393 2.8087 5.4545 42 1 1.5466 -0.3427 4.4989 43 1 0.5288 -2.0019 5.9971 44 1 3.9368 -1.7370 8.5932 45 1 5.1437 0.2762 3.2669 46 1 3.6739 -0.7205 3.4556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286025192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:18 Heat of formation + Delta-G solvation = -12.996600 kcal Electronic energy + Delta-G solvation = -30364.816635 eV Core-core repulsion = 26169.257453 eV Total energy + Delta-G solvation = -4195.559181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.78356 -41.62412 -40.40326 -38.93988 -37.38937 -37.05944 -34.29132 -33.50692 -33.06175 -31.81768 -30.29442 -29.98563 -27.63351 -26.32333 -25.04992 -23.82987 -23.18417 -22.25409 -22.04111 -20.30241 -20.16233 -18.88707 -18.40081 -18.09631 -17.66068 -17.04795 -16.65358 -16.56637 -16.02943 -15.56123 -15.41220 -15.30701 -15.18201 -15.03201 -14.99092 -14.63800 -14.50387 -14.36551 -14.07734 -13.86582 -13.71971 -13.54924 -13.31958 -13.10187 -13.04937 -12.82224 -12.69981 -12.57219 -12.40766 -12.28774 -12.25393 -12.08164 -11.99232 -11.93377 -11.60301 -11.33486 -10.69431 -10.26360 -10.04310 -9.69337 -9.57893 -9.54601 -8.21133 -5.81039 -0.51288 0.11848 1.36928 1.44313 1.53714 1.54819 1.71177 2.02498 2.30397 2.56410 2.66889 2.73735 3.10314 3.12085 3.34043 3.63411 3.75229 3.82960 3.91760 4.00408 4.10474 4.26881 4.30139 4.35962 4.46486 4.51400 4.60089 4.66029 4.70591 4.74153 4.87728 4.95808 4.98208 4.99744 5.06837 5.11192 5.16702 5.20985 5.23869 5.34052 5.46201 5.52659 5.53031 5.69228 5.72752 6.10435 6.14619 6.26707 6.37276 6.62670 7.25788 7.58219 8.13193 8.70025 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.002786 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.345515 B =10047.964593 C =11023.723660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.131 3.869 4 N -0.453 5.453 5 C -0.343 4.343 6 H 0.066 0.934 7 C 0.005 3.995 8 N -0.865 5.865 9 Si 0.976 3.024 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.281 1.281 13 C 0.442 3.558 14 O -0.640 6.640 15 C -0.113 4.113 16 H 0.113 0.887 17 C -0.110 4.110 18 C 0.058 3.942 19 N -0.510 5.510 20 C 0.077 3.923 21 C -0.120 4.120 22 C -0.050 4.050 23 C -0.007 4.007 24 C 0.283 3.717 25 N -0.453 5.453 26 C -0.091 4.091 27 C 0.104 3.896 28 F -0.136 7.136 29 C 0.075 3.925 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.271 0.729 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.163 0.837 45 H 0.059 0.941 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -1.518 14.700 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C 0.009 3.991 4 N -0.170 5.170 5 C -0.471 4.471 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.801 3.199 10 H -0.206 1.206 11 H -0.191 1.191 12 H -0.206 1.206 13 C 0.231 3.769 14 O -0.528 6.528 15 C -0.135 4.135 16 H 0.131 0.869 17 C -0.149 4.149 18 C -0.067 4.067 19 N -0.232 5.232 20 C -0.020 4.020 21 C -0.140 4.140 22 C -0.071 4.071 23 C -0.011 4.011 24 C -0.031 4.031 25 N -0.128 5.128 26 C -0.112 4.112 27 C 0.084 3.916 28 F -0.115 7.115 29 C -0.052 4.052 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.176 0.824 43 H 0.186 0.814 44 H 0.181 0.819 45 H 0.078 0.922 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.190 -2.531 15.818 18.468 hybrid contribution 0.798 0.398 -1.735 1.951 sum -8.392 -2.133 14.083 16.532 Atomic orbital electron populations 1.21522 0.94362 1.01301 1.01401 1.21870 0.96324 0.96678 1.00922 1.21602 0.78455 0.98097 1.00966 1.44035 1.06861 1.61671 1.04432 1.19536 0.93323 1.49730 0.84541 0.91581 1.25737 0.97293 0.95929 1.00773 1.70152 1.14812 1.39019 1.26430 0.85211 0.78145 0.78382 0.78188 1.20576 1.19137 1.20636 1.20548 0.87770 0.82903 0.85646 1.90477 1.17057 1.57908 1.87387 1.22407 0.99839 0.98735 0.92522 0.86910 1.22660 1.02888 0.95238 0.94090 1.23235 0.96277 0.90905 0.96309 1.60971 1.47069 1.05751 1.09404 1.19446 0.93449 0.95621 0.93456 1.21749 0.94150 0.96974 1.01088 1.21354 1.00451 0.94638 0.90665 1.15681 0.94576 0.96348 0.94488 1.25525 0.92653 0.92469 0.92501 1.81321 1.09616 1.11413 1.10493 1.21116 0.94644 0.95146 1.00306 1.17457 0.82398 0.96652 0.95127 1.91515 1.42038 1.84979 1.92954 1.22636 1.00872 0.96764 0.84910 0.91718 0.93766 0.92644 0.91250 0.94634 0.92170 0.90112 0.91875 0.92660 0.87994 0.89498 0.88731 0.82391 0.81440 0.81897 0.92225 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.91 71.98 0.71 -2.74 16 2 C -0.12 -4.28 5.42 30.59 0.17 -4.11 16 3 C 0.13 5.21 4.18 86.38 0.36 5.57 16 4 N -0.45 -21.98 2.63 -635.55 -1.67 -23.65 16 5 C -0.34 -18.83 9.48 84.04 0.80 -18.04 16 6 H 0.07 4.01 7.26 -2.91 -0.02 3.99 16 7 C 0.01 0.26 5.07 84.93 0.43 0.69 16 8 N -0.87 -41.14 8.01 21.66 0.17 -40.97 16 9 Si 0.98 41.09 29.59 68.60 2.03 43.12 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.44 20.59 6.63 87.66 0.58 21.18 16 14 O -0.64 -35.97 15.54 -3.04 -0.05 -36.01 16 15 C -0.11 -3.63 2.44 -10.36 -0.03 -3.66 16 16 H 0.11 3.10 5.09 -2.39 -0.01 3.09 16 17 C -0.11 -2.95 6.51 31.98 0.21 -2.74 16 18 C 0.06 1.18 6.54 86.77 0.57 1.75 16 19 N -0.51 -12.91 4.98 -684.85 -3.41 -16.32 16 20 C 0.08 1.52 4.64 38.42 0.18 1.70 16 21 C -0.12 -1.64 7.76 22.35 0.17 -1.46 16 22 C -0.05 -0.52 9.74 22.51 0.22 -0.30 16 23 C -0.01 -0.09 5.74 -21.28 -0.12 -0.22 16 24 C 0.28 4.56 15.33 88.33 1.35 5.92 16 25 N -0.45 -9.72 18.54 19.00 0.35 -9.36 16 26 C -0.09 -1.28 9.72 22.56 0.22 -1.06 16 27 C 0.10 2.04 7.30 22.44 0.16 2.20 16 28 F -0.14 -3.36 17.07 44.97 0.77 -2.60 16 29 C 0.07 2.30 6.07 86.65 0.53 2.83 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 3.06 6.03 -2.38 -0.01 3.05 16 34 H 0.04 1.19 6.91 -2.39 -0.02 1.17 16 35 H 0.06 1.96 6.81 -2.39 -0.02 1.95 16 36 H 0.08 3.59 5.92 -2.39 -0.01 3.57 16 37 H 0.27 12.17 8.31 -92.71 -0.77 11.40 16 38 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.09 1.26 6.79 -2.39 -0.02 1.24 16 41 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.16 1.77 7.71 -2.91 -0.02 1.75 16 43 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.06 2.38 7.01 -2.39 -0.02 2.36 16 46 H 0.07 2.00 7.00 -2.38 -0.02 1.98 16 Total: -1.00 -68.54 379.85 5.73 -62.82 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.02 Total: 15.48 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.51 Total: 7.49 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.56 Total: -90.30 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.01 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.77 Total: -2.60 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -68.54 5.73 -62.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286025192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.821 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds