Wall clock time and date at job start Wed Apr 1 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30729 * 126.27487 * 239.69045 * 5 2 1 7 7 N 1.28651 * 110.33924 * 179.81849 * 6 5 2 8 8 C 1.32181 * 109.56870 * 0.45321 * 7 6 5 9 9 C 1.41050 * 133.26108 * 179.72957 * 8 7 6 10 10 C 1.35639 * 119.40309 * 180.02562 * 9 8 7 11 11 C 1.41823 * 119.60138 * 359.97438 * 10 9 8 12 12 C 1.47602 * 119.98219 * 180.02562 * 11 10 9 13 13 O 1.21579 * 119.99713 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99701 * 359.97438 * 12 11 10 15 15 C 1.46499 * 119.99452 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46890 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00055 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00293 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00733 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99458 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00651 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00571 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99789 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46994 * 90.00094 * 23 21 19 25 25 H 1.48504 * 109.46929 * 210.00040 * 23 21 19 26 26 H 1.48495 * 109.47059 * 330.00140 * 23 21 19 27 27 C 1.36491 * 120.03328 * 0.02562 * 11 10 9 28 28 N 1.35850 * 120.38850 * 359.96629 * 27 11 10 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.07995 * 120.29804 * 0.02562 * 9 8 7 39 39 H 1.08002 * 120.19993 * 180.02562 * 10 9 8 40 40 H 0.96995 * 119.99877 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.47064 * 299.99968 * 15 14 12 42 42 H 1.09001 * 109.47451 * 60.00475 * 15 14 12 43 43 H 0.97005 * 119.99697 * 359.97438 * 18 16 15 44 44 H 0.96989 * 120.00644 * 179.97438 * 22 21 19 45 45 H 1.08002 * 119.80773 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7916 -1.7743 -1.2535 7 7 3.0327 -2.1253 -2.4675 8 6 2.4388 -1.2854 -3.2975 9 6 2.3769 -1.1978 -4.7039 10 6 1.6679 -0.1940 -5.2781 11 6 1.0001 0.7504 -4.4573 12 6 0.2257 1.8457 -5.0732 13 8 -0.3472 2.6551 -4.3699 14 7 0.1537 1.9483 -6.4151 15 6 -0.6144 3.0358 -7.0263 16 6 -0.5359 2.9244 -8.5271 17 8 0.0997 2.0255 -9.0361 18 7 -1.1709 3.8243 -9.3038 19 6 -1.0990 3.7234 -10.6692 20 1 -0.5338 2.9225 -11.1224 21 6 -1.7542 4.6508 -11.4699 22 7 -1.6857 4.5538 -12.7787 23 14 -2.7337 6.0350 -10.6860 24 1 -1.8500 7.2101 -10.4774 25 1 -3.8579 6.4134 -11.5794 26 1 -3.2716 5.5817 -9.3783 27 6 1.0732 0.6469 -3.0983 28 7 1.7831 -0.3583 -2.5228 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 2.8894 -1.9233 -5.3181 39 1 1.6115 -0.1150 -6.3537 40 1 0.6106 1.3022 -6.9761 41 1 -1.6556 2.9668 -6.7112 42 1 -0.2020 3.9941 -6.7107 43 1 -1.6789 4.5435 -8.8968 44 1 -2.1434 5.2010 -13.3376 45 1 0.5630 1.3679 -2.4768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343537525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:24 Heat of formation + Delta-G solvation = 32.314225 kcal Electronic energy + Delta-G solvation = -29275.980181 eV Core-core repulsion = 25102.305786 eV Total energy + Delta-G solvation = -4173.674395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.00380 -40.30809 -38.67803 -37.90955 -37.51843 -34.90100 -34.21838 -33.78524 -31.93983 -31.70819 -29.55353 -28.30139 -27.85143 -27.72543 -25.35556 -24.13611 -24.02933 -23.07816 -21.20769 -20.27475 -19.80866 -18.96174 -18.43478 -17.48003 -17.27141 -16.97400 -16.22085 -15.82231 -15.63478 -15.49586 -15.24527 -15.05407 -14.60779 -14.34641 -14.21425 -14.19766 -13.73406 -13.26369 -12.90031 -12.86144 -12.80758 -12.69973 -12.57079 -12.28775 -12.25467 -12.18993 -11.94777 -11.89401 -11.73841 -11.45635 -11.34236 -11.31762 -10.79445 -10.72644 -10.36129 -10.14747 -9.93608 -9.79967 -9.19342 -8.91295 -8.46463 -8.40634 -6.49541 -4.02847 0.03114 0.52023 1.74731 2.09376 2.61858 2.90402 2.91845 2.96813 3.06253 3.17682 3.43550 3.53334 3.80592 3.95141 4.09602 4.11855 4.21108 4.30069 4.36367 4.42790 4.54815 4.62700 4.91360 5.04501 5.04590 5.10091 5.23183 5.25434 5.33828 5.42383 5.42605 5.44740 5.51390 5.57564 5.60440 5.62067 5.62990 5.64713 5.73033 5.86541 5.91791 6.22838 6.37824 7.31120 7.39156 7.87426 7.98455 8.17795 8.34048 8.71904 9.19456 9.51074 10.62276 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.002058 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.312254 B =13599.733469 C =14589.686618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.021 3.979 3 C -0.149 4.149 4 C -0.130 4.130 5 C 0.161 3.839 6 N -0.243 5.243 7 N -0.288 5.288 8 C 0.200 3.800 9 C -0.077 4.077 10 C -0.068 4.068 11 C -0.146 4.146 12 C 0.569 3.431 13 O -0.542 6.542 14 N -0.694 5.694 15 C 0.106 3.894 16 C 0.435 3.565 17 O -0.580 6.580 18 N -0.572 5.572 19 C -0.312 4.312 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.871 5.871 23 Si 0.879 3.121 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.267 1.267 27 C 0.136 3.864 28 N -0.390 5.390 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.414 0.586 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.375 0.625 44 H 0.277 0.723 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -5.636 24.701 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 C -0.207 4.207 4 C -0.188 4.188 5 C -0.101 4.101 6 N -0.081 5.081 7 N -0.132 5.132 8 C -0.049 4.049 9 C -0.099 4.099 10 C -0.092 4.092 11 C -0.153 4.153 12 C 0.354 3.646 13 O -0.421 6.421 14 N -0.348 5.348 15 C -0.022 4.022 16 C 0.220 3.780 17 O -0.464 6.464 18 N -0.210 5.210 19 C -0.440 4.440 20 H 0.140 0.860 21 C -0.159 4.159 22 N -0.509 5.509 23 Si 0.705 3.295 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.192 1.192 27 C 0.010 3.990 28 N -0.070 5.070 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.183 0.817 39 H 0.175 0.825 40 H 0.254 0.746 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.208 0.792 44 H 0.087 0.913 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.854 -6.852 25.230 26.591 hybrid contribution -1.384 1.923 -0.565 2.436 sum 3.470 -4.929 24.665 25.390 Atomic orbital electron populations 1.22024 0.92553 1.03065 1.03072 1.19129 0.95959 0.94577 0.88485 1.22023 1.02058 0.93567 1.03072 1.21722 1.02142 1.00581 0.94309 1.24927 1.03020 0.97990 0.84163 1.74186 1.11532 1.08908 1.13486 1.74944 1.21734 1.21741 0.94781 1.22512 0.97452 0.90005 0.94938 1.20211 1.00973 1.00303 0.88372 1.21358 0.94197 0.92314 1.01376 1.19505 1.03996 0.99617 0.92192 1.17523 0.80656 0.84018 0.82424 1.90802 1.46723 1.42628 1.61947 1.45526 1.52178 1.31299 1.05786 1.21063 0.97358 0.90891 0.92859 1.19543 0.85585 0.85533 0.87290 1.90543 1.45841 1.35677 1.74376 1.42115 1.45446 1.25943 1.07460 1.19439 1.31710 1.14459 0.78430 0.85991 1.25082 0.97482 0.97992 0.95308 1.69608 1.42043 1.36233 1.03042 0.86672 0.80683 0.82640 0.79494 1.19337 1.19905 1.19229 1.21746 0.92942 0.89983 0.94316 1.43585 1.34322 1.20938 1.08127 0.92430 0.90439 0.91715 0.90445 0.91716 0.92424 0.91510 0.91499 0.91384 0.81697 0.82500 0.74649 0.89230 0.89212 0.79199 0.91265 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.40 37.16 0.31 -0.65 16 2 C 0.02 0.16 0.89 -155.66 -0.14 0.02 16 3 C -0.15 -0.96 8.40 37.15 0.31 -0.65 16 4 C -0.13 -0.86 7.97 37.16 0.30 -0.57 16 5 C 0.16 1.75 6.35 -154.12 -0.98 0.77 16 6 N -0.24 -3.24 11.50 32.97 0.38 -2.86 16 7 N -0.29 -4.04 12.29 31.19 0.38 -3.66 16 8 C 0.20 2.41 7.92 -155.95 -1.23 1.17 16 9 C -0.08 -0.73 10.09 -39.45 -0.40 -1.13 16 10 C -0.07 -0.62 9.53 -39.14 -0.37 -1.00 16 11 C -0.15 -1.54 5.84 -105.34 -0.61 -2.16 16 12 C 0.57 7.28 7.76 -12.44 -0.10 7.19 16 13 O -0.54 -8.10 16.27 5.30 0.09 -8.01 16 14 N -0.69 -9.42 5.48 -62.51 -0.34 -9.76 16 15 C 0.11 1.60 6.15 -5.19 -0.03 1.57 16 16 C 0.43 8.75 7.85 -10.99 -0.09 8.67 16 17 O -0.58 -13.52 15.24 5.55 0.08 -13.43 16 18 N -0.57 -12.45 5.09 -10.97 -0.06 -12.51 16 19 C -0.31 -8.20 10.16 -14.93 -0.15 -8.36 16 20 H 0.12 3.67 7.39 -52.49 -0.39 3.28 16 21 C 0.05 1.19 5.50 -17.47 -0.10 1.09 16 22 N -0.87 -24.06 13.96 55.50 0.77 -23.28 16 23 Si 0.88 18.14 27.74 -169.99 -4.71 13.42 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.27 -4.98 6.52 56.52 0.37 -4.62 16 27 C 0.14 1.36 9.13 -16.40 -0.15 1.21 16 28 N -0.39 -4.27 2.94 -59.37 -0.17 -4.45 16 29 H 0.06 0.39 6.31 -51.93 -0.33 0.06 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.39 6.31 -51.93 -0.33 0.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.16 1.21 6.44 -52.49 -0.34 0.87 16 40 H 0.41 5.44 5.47 -40.82 -0.22 5.21 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.37 7.13 5.76 -40.82 -0.24 6.89 16 44 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.18 1.61 5.31 -52.49 -0.28 1.33 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.03 375.84 -6.86 -39.89 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.51 Total: 11.79 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -3.43 Total: 7.19 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.96 Total: -56.51 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.44 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -4.71 Total: 13.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.03 -6.86 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343537525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.205 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds