Wall clock time and date at job start Wed Apr 1 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30729 * 126.27487 * 239.69045 * 5 2 1 7 7 N 1.28651 * 110.33924 * 179.81849 * 6 5 2 8 8 C 1.32181 * 109.56870 * 0.45321 * 7 6 5 9 9 C 1.41050 * 133.26108 * 179.72957 * 8 7 6 10 10 C 1.35639 * 119.40309 * 180.02562 * 9 8 7 11 11 C 1.41823 * 119.60138 * 359.97438 * 10 9 8 12 12 C 1.47602 * 119.98219 * 180.02562 * 11 10 9 13 13 O 1.21579 * 119.99713 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99701 * 359.97438 * 12 11 10 15 15 C 1.46499 * 119.99452 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46890 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00055 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00293 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00733 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99458 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00651 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00571 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99789 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46994 * 90.00094 * 23 21 19 25 25 H 1.48504 * 109.46929 * 210.00040 * 23 21 19 26 26 H 1.48495 * 109.47059 * 330.00140 * 23 21 19 27 27 C 1.36491 * 120.03328 * 0.02562 * 11 10 9 28 28 N 1.35850 * 120.38850 * 359.96629 * 27 11 10 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.07995 * 120.29804 * 0.02562 * 9 8 7 39 39 H 1.08002 * 120.19993 * 180.02562 * 10 9 8 40 40 H 0.96995 * 119.99877 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.47064 * 299.99968 * 15 14 12 42 42 H 1.09001 * 109.47451 * 60.00475 * 15 14 12 43 43 H 0.97005 * 119.99697 * 359.97438 * 18 16 15 44 44 H 0.96989 * 120.00644 * 179.97438 * 22 21 19 45 45 H 1.08002 * 119.80773 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7916 -1.7743 -1.2535 7 7 3.0327 -2.1253 -2.4675 8 6 2.4388 -1.2854 -3.2975 9 6 2.3769 -1.1978 -4.7039 10 6 1.6679 -0.1940 -5.2781 11 6 1.0001 0.7504 -4.4573 12 6 0.2257 1.8457 -5.0732 13 8 -0.3472 2.6551 -4.3699 14 7 0.1537 1.9483 -6.4151 15 6 -0.6144 3.0358 -7.0263 16 6 -0.5359 2.9244 -8.5271 17 8 0.0997 2.0255 -9.0361 18 7 -1.1709 3.8243 -9.3038 19 6 -1.0990 3.7234 -10.6692 20 1 -0.5338 2.9225 -11.1224 21 6 -1.7542 4.6508 -11.4699 22 7 -1.6857 4.5538 -12.7787 23 14 -2.7337 6.0350 -10.6860 24 1 -1.8500 7.2101 -10.4774 25 1 -3.8579 6.4134 -11.5794 26 1 -3.2716 5.5817 -9.3783 27 6 1.0732 0.6469 -3.0983 28 7 1.7831 -0.3583 -2.5228 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 2.8894 -1.9233 -5.3181 39 1 1.6115 -0.1150 -6.3537 40 1 0.6106 1.3022 -6.9761 41 1 -1.6556 2.9668 -6.7112 42 1 -0.2020 3.9941 -6.7107 43 1 -1.6789 4.5435 -8.8968 44 1 -2.1434 5.2010 -13.3376 45 1 0.5630 1.3679 -2.4768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343537525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:23 Heat of formation + Delta-G solvation = 9.878542 kcal Electronic energy + Delta-G solvation = -29276.953065 eV Core-core repulsion = 25102.305786 eV Total energy + Delta-G solvation = -4174.647279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.86281 -41.39012 -40.21676 -38.86843 -38.15905 -36.34102 -35.58928 -34.79205 -33.82023 -32.62360 -30.38476 -29.63286 -28.33608 -28.25844 -26.75881 -25.38399 -24.89811 -23.88734 -22.18469 -21.48197 -21.02435 -20.57622 -19.48771 -18.58722 -18.11924 -17.84064 -17.53795 -16.82662 -16.79677 -16.68942 -16.48060 -16.08297 -15.63140 -15.61369 -15.10949 -14.90441 -14.79996 -14.56390 -14.31229 -14.05428 -13.87464 -13.55047 -13.50323 -13.34256 -13.16170 -12.95232 -12.77786 -12.71786 -12.51479 -12.43490 -12.42707 -12.06881 -11.99275 -11.96435 -11.59572 -11.56072 -11.41701 -10.83023 -10.64797 -10.34040 -10.25488 -9.29642 -8.43805 -6.05967 -0.79115 -0.29539 0.90890 1.21280 1.32480 1.35727 1.45567 1.69129 1.81331 1.85737 2.22122 2.29908 2.76086 2.84738 3.07901 3.12738 3.27253 3.36477 3.47734 3.51953 3.82402 3.89318 3.95772 4.05608 4.10677 4.42853 4.43001 4.45284 4.58059 4.64876 4.71983 4.74353 4.75146 4.83652 4.88712 4.91752 4.95507 5.05899 5.11022 5.19780 5.23686 5.37215 5.49276 5.57649 5.90128 6.30886 6.49524 6.80420 6.91365 7.28443 7.30920 7.79644 8.72398 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.002058 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.312254 B =13599.733469 C =14589.686618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.019 3.981 3 C -0.147 4.147 4 C -0.127 4.127 5 C 0.169 3.831 6 N -0.275 5.275 7 N -0.325 5.325 8 C 0.191 3.809 9 C -0.080 4.080 10 C -0.059 4.059 11 C -0.152 4.152 12 C 0.578 3.422 13 O -0.560 6.560 14 N -0.698 5.698 15 C 0.117 3.883 16 C 0.444 3.556 17 O -0.613 6.613 18 N -0.578 5.578 19 C -0.329 4.329 20 H 0.064 0.936 21 C -0.010 4.010 22 N -0.927 5.927 23 Si 0.958 3.042 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.229 1.229 27 C 0.145 3.855 28 N -0.394 5.394 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.186 0.814 39 H 0.173 0.827 40 H 0.416 0.584 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.392 0.608 44 H 0.280 0.720 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -3.719 27.539 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.204 4.204 4 C -0.185 4.185 5 C -0.095 4.095 6 N -0.111 5.111 7 N -0.168 5.168 8 C -0.059 4.059 9 C -0.101 4.101 10 C -0.083 4.083 11 C -0.159 4.159 12 C 0.364 3.636 13 O -0.440 6.440 14 N -0.351 5.351 15 C -0.010 4.010 16 C 0.232 3.768 17 O -0.499 6.499 18 N -0.218 5.218 19 C -0.458 4.458 20 H 0.082 0.918 21 C -0.210 4.210 22 N -0.566 5.566 23 Si 0.778 3.222 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.152 1.152 27 C 0.019 3.981 28 N -0.073 5.073 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.203 0.797 39 H 0.190 0.810 40 H 0.256 0.744 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.228 0.772 44 H 0.090 0.910 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.468 -4.969 28.109 28.754 hybrid contribution -0.856 1.207 -1.410 2.044 sum 2.612 -3.762 26.699 27.089 Atomic orbital electron populations 1.22031 0.91380 1.02852 1.04167 1.19391 0.96795 0.94983 0.87187 1.22029 1.01521 0.92721 1.04168 1.21720 1.01425 1.00268 0.95044 1.25645 1.01594 0.97165 0.85053 1.74111 1.13078 1.10412 1.13547 1.74850 1.23350 1.23202 0.95427 1.22893 0.97248 0.89925 0.95851 1.20468 1.01245 1.00936 0.87484 1.21487 0.93299 0.91556 1.01970 1.19356 1.04519 0.99550 0.92468 1.17599 0.80189 0.83996 0.81783 1.90796 1.47568 1.43444 1.62169 1.45523 1.52312 1.31126 1.06187 1.20990 0.99217 0.92488 0.88309 1.20510 0.83093 0.83762 0.89482 1.90537 1.46627 1.36846 1.75931 1.41921 1.46753 1.27298 1.05783 1.19015 1.32233 1.13755 0.80843 0.91764 1.26083 0.98376 1.00944 0.95595 1.69778 1.43731 1.37957 1.05168 0.85453 0.78568 0.78258 0.79886 1.18164 1.20205 1.15212 1.21944 0.92148 0.89590 0.94410 1.43681 1.34435 1.21029 1.08162 0.92680 0.87970 0.92604 0.87976 0.92608 0.92672 0.92639 0.92636 0.88677 0.79661 0.81001 0.74437 0.86985 0.86886 0.77160 0.91004 0.78414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.40 71.98 0.60 -0.94 16 2 C 0.02 0.26 0.89 -52.93 -0.05 0.21 16 3 C -0.15 -1.55 8.40 71.98 0.60 -0.95 16 4 C -0.13 -1.52 7.97 71.98 0.57 -0.94 16 5 C 0.17 3.57 6.35 137.67 0.87 4.44 16 6 N -0.27 -7.44 11.50 -49.62 -0.57 -8.01 16 7 N -0.32 -9.29 12.29 -55.23 -0.68 -9.97 16 8 C 0.19 4.52 7.92 134.12 1.06 5.58 16 9 C -0.08 -1.43 10.09 22.36 0.23 -1.20 16 10 C -0.06 -0.97 9.53 22.55 0.21 -0.76 16 11 C -0.15 -2.90 5.84 -20.33 -0.12 -3.01 16 12 C 0.58 13.23 7.76 86.71 0.67 13.90 16 13 O -0.56 -14.92 16.27 -3.96 -0.06 -14.99 16 14 N -0.70 -17.14 5.48 -469.94 -2.58 -19.71 16 15 C 0.12 3.16 6.15 85.63 0.53 3.69 16 16 C 0.44 17.30 7.85 87.66 0.69 17.99 16 17 O -0.61 -28.73 15.24 -3.06 -0.05 -28.78 16 18 N -0.58 -24.45 5.09 -307.00 -1.56 -26.01 16 19 C -0.33 -17.77 10.16 84.04 0.85 -16.92 16 20 H 0.06 4.13 7.39 -2.91 -0.02 4.10 16 21 C -0.01 -0.52 5.50 84.92 0.47 -0.06 16 22 N -0.93 -52.94 13.96 21.66 0.30 -52.63 16 23 Si 0.96 36.15 27.74 68.60 1.90 38.05 16 24 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 25 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 26 H -0.23 -7.15 6.52 99.48 0.65 -6.51 16 27 C 0.14 2.63 9.13 83.66 0.76 3.40 16 28 N -0.39 -8.25 2.94 -341.74 -1.00 -9.26 16 29 H 0.05 0.61 6.31 -2.39 -0.02 0.60 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.68 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.61 6.31 -2.39 -0.02 0.60 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.17 2.32 6.44 -2.91 -0.02 2.30 16 40 H 0.42 10.14 5.47 -92.71 -0.51 9.63 16 41 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.39 13.69 5.76 -92.70 -0.53 13.16 16 44 H 0.28 14.68 8.31 -92.72 -0.77 13.91 16 45 H 0.20 2.98 5.31 -2.91 -0.02 2.96 16 Total: -1.00 -75.93 375.84 3.64 -72.29 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.03 Total: 34.59 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 7.97 Total: 24.43 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -6.09 Total: -125.59 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.11 Total: -43.77 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 1.90 Total: 38.05 kcal Total: -75.93 3.64 -72.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343537525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.173 kcal (2) G-P(sol) polarization free energy of solvation -75.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds