Wall clock time and date at job start Wed Apr 1 2020 04:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47499 * 2 1 4 4 N 1.46507 * 109.47218 * 119.99964 * 2 1 3 5 5 N 1.40021 * 125.94598 * 300.00281 * 4 2 1 6 6 C 1.30119 * 109.77793 * 179.75495 * 5 4 2 7 7 C 1.41622 * 108.67940 * 0.37690 * 6 5 4 8 8 C 1.40133 * 133.49334 * 179.91260 * 7 6 5 9 9 C 1.36256 * 119.93612 * 179.70871 * 8 7 6 10 10 C 1.39590 * 120.62049 * 359.95495 * 9 8 7 11 11 N 1.39928 * 119.78178 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00035 * 213.59421 * 11 10 9 13 13 O 1.21582 * 120.00362 * 5.31388 * 12 11 10 14 14 N 1.34777 * 119.99713 * 185.32412 * 12 11 10 15 15 C 1.46501 * 119.99965 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47288 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99994 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99804 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99636 * 180.02562 * 18 16 15 20 20 H 1.07988 * 120.00260 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99716 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46848 * 59.99697 * 23 21 19 25 25 H 1.48497 * 109.47251 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46991 * 299.99964 * 23 21 19 27 27 C 1.38223 * 120.43891 * 0.04423 * 10 9 8 28 28 C 1.37167 * 125.95180 * 119.99714 * 4 2 1 29 29 H 1.09000 * 109.46743 * 59.99983 * 1 2 3 30 30 H 1.08991 * 109.47662 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47116 * 300.00596 * 1 2 3 32 32 H 1.09004 * 109.47116 * 239.99404 * 2 1 3 33 33 H 1.09004 * 109.47090 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47137 * 299.99775 * 3 2 1 35 35 H 1.08996 * 109.47224 * 59.99861 * 3 2 1 36 36 H 1.08004 * 125.66292 * 180.02562 * 6 5 4 37 37 H 1.08002 * 120.03325 * 359.67132 * 8 7 6 38 38 H 1.07999 * 119.69204 * 179.97438 * 9 8 7 39 39 H 0.97009 * 119.99646 * 33.58811 * 11 10 9 40 40 H 0.97001 * 120.00618 * 359.97438 * 14 12 11 41 41 H 1.08995 * 109.47033 * 300.00215 * 15 14 12 42 42 H 1.09002 * 109.47140 * 59.99516 * 15 14 12 43 43 H 0.97001 * 120.00087 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00083 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.16335 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7579 -0.3224 2.5218 6 6 2.3410 -1.1561 3.3330 7 6 3.0329 -2.1256 2.5668 8 6 3.8183 -3.2373 2.9000 9 6 4.3618 -4.0057 1.9148 10 6 4.1435 -3.6978 0.5709 11 7 4.7096 -4.4993 -0.4267 12 6 5.1094 -3.9466 -1.5891 13 8 5.0680 -2.7403 -1.7347 14 7 5.5548 -4.7314 -2.5902 15 6 5.9888 -4.1308 -3.8540 16 6 6.4375 -5.2163 -4.7982 17 8 6.3981 -6.3775 -4.4499 18 7 6.8815 -4.8969 -6.0299 19 6 7.2891 -5.8845 -6.8891 20 1 7.2541 -6.9183 -6.5790 21 6 7.7474 -5.5552 -8.1589 22 7 7.7905 -4.2971 -8.5360 23 14 8.3022 -6.9008 -9.3297 24 1 7.1731 -7.8306 -9.5857 25 1 8.7417 -6.2920 -10.6109 26 1 9.4323 -7.6495 -8.7235 27 6 3.3721 -2.6061 0.2190 28 6 2.8102 -1.8105 1.2127 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.3081 -1.1124 4.4117 37 1 3.9933 -3.4844 3.9367 38 1 4.9668 -4.8613 2.1760 39 1 4.8145 -5.4527 -0.2814 40 1 5.5881 -5.6938 -2.4741 41 1 5.1592 -3.5816 -4.2991 42 1 6.8173 -3.4478 -3.6661 43 1 6.9126 -3.9683 -6.3086 44 1 8.1101 -4.0672 -9.4226 45 1 3.2065 -2.3717 -0.8222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348947639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:30 Heat of formation + Delta-G solvation = 25.776069 kcal Electronic energy + Delta-G solvation = -28838.190273 eV Core-core repulsion = 24664.232363 eV Total energy + Delta-G solvation = -4173.957911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65097 -40.33439 -38.46370 -37.47084 -35.81340 -34.53582 -34.15148 -33.72813 -31.78204 -31.42800 -29.26783 -29.05355 -27.54861 -27.34614 -24.64813 -23.41712 -23.19819 -22.10610 -20.76597 -19.89246 -19.68082 -18.60027 -18.23180 -17.76393 -17.03611 -16.21795 -15.68717 -15.66355 -15.32564 -15.08450 -14.89390 -14.78406 -14.59944 -14.18754 -14.10761 -14.00456 -13.71990 -13.45320 -13.36272 -12.75704 -12.56671 -12.53820 -12.28932 -12.26467 -11.95720 -11.67006 -11.64681 -11.57689 -11.37615 -11.13937 -10.80396 -10.54086 -10.36084 -10.29815 -10.24292 -9.95207 -9.67018 -8.95015 -8.69317 -8.18798 -8.14742 -7.90937 -6.55546 -3.97858 0.78971 1.39152 2.17598 2.40610 2.60270 3.10203 3.15297 3.19095 3.22734 3.68364 3.73592 4.02523 4.17221 4.21206 4.47400 4.66959 4.67183 4.81285 4.81533 4.92562 4.99346 5.09049 5.12858 5.27008 5.27942 5.36624 5.44523 5.47529 5.57195 5.75097 5.81324 5.87795 5.90340 5.97213 5.99738 6.04770 6.15613 6.27360 6.43283 6.57289 6.76877 6.89409 6.99937 7.41870 7.52689 7.87212 7.98676 8.39691 8.54554 9.00028 9.34152 9.81697 10.61101 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.001955 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.340422 B =14320.589733 C =15519.953448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 C -0.161 4.161 4 N -0.395 5.395 5 N -0.258 5.258 6 C 0.070 3.930 7 C -0.201 4.201 8 C -0.022 4.022 9 C -0.180 4.180 10 C 0.221 3.779 11 N -0.686 5.686 12 C 0.703 3.297 13 O -0.578 6.578 14 N -0.717 5.717 15 C 0.127 3.873 16 C 0.427 3.573 17 O -0.598 6.598 18 N -0.547 5.547 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 C -0.151 4.151 28 C 0.150 3.850 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.411 0.589 40 H 0.409 0.591 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.396 0.604 44 H 0.275 0.725 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 6.482 20.863 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 C -0.218 4.218 4 N -0.183 5.183 5 N -0.071 5.071 6 C -0.126 4.126 7 C -0.210 4.210 8 C -0.043 4.043 9 C -0.201 4.201 10 C 0.122 3.878 11 N -0.334 5.334 12 C 0.403 3.597 13 O -0.455 6.455 14 N -0.374 5.374 15 C -0.001 4.001 16 C 0.212 3.788 17 O -0.485 6.485 18 N -0.182 5.182 19 C -0.436 4.436 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.761 3.239 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.176 4.176 28 C 0.033 3.967 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.206 0.794 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.247 0.753 40 H 0.247 0.753 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.041 8.037 20.371 24.991 hybrid contribution 1.004 -1.642 -0.769 2.073 sum -11.037 6.395 19.602 23.387 Atomic orbital electron populations 1.22142 0.93603 1.02845 1.03223 1.21239 0.95134 0.93818 0.83637 1.22135 1.02034 0.94548 1.03124 1.48618 1.43106 1.22404 1.04197 1.76568 1.20896 1.22228 0.87374 1.23830 0.96414 0.92516 0.99799 1.18920 1.08334 1.01566 0.92167 1.20083 0.93549 0.91630 0.99076 1.20375 1.05635 1.03598 0.90535 1.17103 0.91876 0.91740 0.87127 1.42634 1.64407 1.11513 1.14824 1.15831 0.78389 0.85481 0.79974 1.90934 1.60937 1.12289 1.81316 1.44789 1.68223 1.11000 1.13349 1.20844 1.00716 0.95352 0.83173 1.19705 0.85645 0.89388 0.84016 1.90496 1.61278 1.20100 1.76626 1.41778 1.54755 1.10445 1.11194 1.19679 1.39823 0.90383 0.93688 0.87693 1.25338 0.97057 0.97346 0.97941 1.69605 1.45957 1.16639 1.21170 0.85862 0.79247 0.80043 0.78763 1.19756 1.20833 1.19744 1.19892 1.01345 0.97445 0.98905 1.18619 0.93840 0.89268 0.94989 0.90700 0.92173 0.91288 0.88050 0.91958 0.90706 0.91345 0.79418 0.85126 0.85237 0.75329 0.75302 0.89790 0.89766 0.76993 0.91479 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.45 37.15 0.35 -0.99 16 2 C 0.16 1.64 3.70 -67.93 -0.25 1.39 16 3 C -0.16 -1.45 9.45 37.16 0.35 -1.10 16 4 N -0.39 -4.80 3.34 -52.24 -0.17 -4.98 16 5 N -0.26 -3.04 12.28 30.88 0.38 -2.66 16 6 C 0.07 0.69 12.05 -16.99 -0.20 0.48 16 7 C -0.20 -2.24 6.17 -106.92 -0.66 -2.90 16 8 C -0.02 -0.20 10.05 -39.58 -0.40 -0.60 16 9 C -0.18 -1.73 9.87 -39.79 -0.39 -2.13 16 10 C 0.22 2.68 6.28 -83.66 -0.53 2.16 16 11 N -0.69 -8.08 5.34 -14.21 -0.08 -8.16 16 12 C 0.70 10.75 8.29 -86.92 -0.72 10.02 16 13 O -0.58 -10.53 14.03 5.29 0.07 -10.46 16 14 N -0.72 -11.23 5.53 -66.41 -0.37 -11.60 16 15 C 0.13 2.24 6.15 -5.19 -0.03 2.21 16 16 C 0.43 9.45 7.85 -10.99 -0.09 9.37 16 17 O -0.60 -14.80 15.24 5.55 0.08 -14.71 16 18 N -0.55 -13.22 5.29 -10.96 -0.06 -13.28 16 19 C -0.31 -8.16 9.68 -14.93 -0.14 -8.30 16 20 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -23.48 13.05 55.50 0.72 -22.76 16 23 Si 0.93 20.21 29.55 -169.99 -5.02 15.18 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.15 -2.05 8.44 -39.25 -0.33 -2.38 16 28 C 0.15 1.94 6.88 -84.17 -0.58 1.36 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.03 7.48 -51.93 -0.39 0.64 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.19 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.41 3.54 8.83 -40.82 -0.36 3.18 16 40 H 0.41 6.16 7.46 -40.82 -0.30 5.85 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.40 9.21 7.90 -40.82 -0.32 8.88 16 44 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.14 2.09 6.01 -52.48 -0.32 1.77 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -32.93 387.24 -8.17 -41.11 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -5.85 Total: 17.29 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -3.72 Total: 9.18 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.43 Total: -63.43 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.16 Total: -25.17 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.93 -8.17 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348947639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.881 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds