Wall clock time and date at job start Wed Apr 1 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 N 1.46500 * 109.47190 * 239.99942 * 2 1 3 5 5 C 1.34103 * 125.03494 * 84.99916 * 4 2 1 6 6 C 1.38237 * 107.89652 * 179.97438 * 5 4 2 7 7 C 1.41150 * 134.73779 * 179.97438 * 6 5 4 8 8 C 1.36204 * 119.48480 * 180.08537 * 7 6 5 9 9 N 1.40126 * 119.21082 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99848 * 214.04678 * 9 8 7 11 11 O 1.21597 * 120.00124 * 5.32644 * 10 9 8 12 12 N 1.34779 * 120.00017 * 185.33482 * 10 9 8 13 13 C 1.46501 * 120.00015 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46986 * 179.97438 * 13 12 10 15 15 O 1.21286 * 119.99926 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99761 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99956 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00092 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00024 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00385 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46993 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47205 * 119.99538 * 21 19 17 24 24 H 1.48495 * 109.47306 * 239.99631 * 21 19 17 25 25 C 1.40207 * 121.57291 * 359.89619 * 8 7 6 26 26 C 1.35529 * 121.76026 * 0.07331 * 25 8 7 27 27 C 1.41181 * 119.70105 * 359.97438 * 26 25 8 28 28 N 1.32109 * 134.57310 * 180.27554 * 27 26 25 29 29 H 1.08998 * 109.47313 * 60.00264 * 1 2 3 30 30 H 1.08996 * 109.47642 * 300.00217 * 1 2 3 31 31 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47313 * 119.99736 * 2 1 3 33 33 H 1.08999 * 109.46788 * 59.99864 * 3 2 1 34 34 H 1.09002 * 109.47043 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46860 * 300.00013 * 3 2 1 36 36 H 1.07999 * 126.04609 * 0.02562 * 5 4 2 37 37 H 1.07999 * 120.25948 * 359.97438 * 7 6 5 38 38 H 0.96997 * 119.99700 * 34.04986 * 9 8 7 39 39 H 0.96993 * 119.99621 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47264 * 300.00085 * 13 12 10 41 41 H 1.08998 * 109.47195 * 59.99887 * 13 12 10 42 42 H 0.97005 * 120.00361 * 359.97438 * 16 14 13 43 43 H 0.96993 * 120.00512 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.11570 * 180.02562 * 25 8 7 45 45 H 1.08005 * 120.14837 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1847 -0.1222 -2.3993 6 6 2.6590 -1.0903 -3.2646 7 6 3.0192 -1.1128 -4.6292 8 6 3.4616 -2.2741 -5.1867 9 7 3.8170 -2.2901 -6.5420 10 6 3.5968 -3.3938 -7.2834 11 8 3.0027 -4.3401 -6.8036 12 7 4.0352 -3.4489 -8.5567 13 6 3.7963 -4.6488 -9.3625 14 6 4.3812 -4.4551 -10.7378 15 8 4.9420 -3.4167 -11.0174 16 7 4.2803 -5.4353 -11.6571 17 6 4.8129 -5.2593 -12.9081 18 1 5.3130 -4.3350 -13.1570 19 6 4.7083 -6.2697 -13.8562 20 7 4.0993 -7.3943 -13.5537 21 14 5.4334 -6.0296 -15.5609 22 1 6.0615 -4.6868 -15.6470 23 1 6.4598 -7.0726 -15.8137 24 1 4.3560 -6.1389 -16.5770 25 6 3.5713 -3.4535 -4.4364 26 6 3.2419 -3.4964 -3.1225 27 6 2.7749 -2.3292 -2.4799 28 7 2.3867 -2.0397 -1.2508 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.9843 0.9095 -2.6479 37 1 2.9428 -0.2167 -5.2270 38 1 4.2216 -1.5068 -6.9465 39 1 4.5089 -2.6940 -8.9396 40 1 4.2677 -5.5074 -8.8843 41 1 2.7235 -4.8230 -9.4456 42 1 3.8314 -6.2657 -11.4336 43 1 4.0267 -8.0997 -14.2153 44 1 3.9272 -4.3519 -4.9187 45 1 3.3370 -4.4191 -2.5692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349511431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:13 Heat of formation + Delta-G solvation = 34.981667 kcal Electronic energy + Delta-G solvation = -28117.915551 eV Core-core repulsion = 23944.356825 eV Total energy + Delta-G solvation = -4173.558726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.54569 -40.28963 -38.45970 -37.64885 -35.78343 -34.44632 -33.89922 -33.52989 -31.86618 -31.37532 -29.79569 -28.76764 -27.92980 -27.16818 -24.77578 -24.31547 -22.47702 -21.49968 -20.76140 -20.23008 -19.62479 -18.55892 -18.07207 -17.83807 -17.10616 -16.59879 -15.76989 -15.62727 -15.48483 -15.03473 -14.87081 -14.70010 -14.47053 -14.13012 -13.99857 -13.91539 -13.63381 -13.54693 -13.39431 -13.09139 -12.94409 -12.75725 -12.33768 -12.20559 -12.03731 -11.86806 -11.75270 -11.63435 -11.47297 -11.14483 -10.57463 -10.44078 -10.41004 -10.32824 -10.03404 -9.67650 -9.64994 -8.83460 -8.63886 -8.53589 -8.10396 -7.40286 -6.51639 -3.93733 0.49850 1.72876 2.02624 2.27925 2.70651 3.10221 3.22762 3.26178 3.29334 3.73841 3.83826 3.86489 4.07869 4.20947 4.22526 4.33972 4.41772 4.50450 4.81656 4.83145 4.87779 4.99304 5.02743 5.12209 5.17103 5.20361 5.23026 5.36707 5.43189 5.52172 5.55224 5.87544 5.93935 5.98120 6.06580 6.15583 6.29571 6.37402 6.51063 6.64414 6.68212 6.95854 7.05619 7.46111 7.50633 7.92193 8.11306 8.44512 8.67657 9.04493 9.39098 9.86704 10.65248 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.001516 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.399792 B =18465.241119 C =18797.881321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 C -0.166 4.166 4 N -0.319 5.319 5 C 0.065 3.935 6 C -0.181 4.181 7 C -0.096 4.096 8 C 0.153 3.847 9 N -0.689 5.689 10 C 0.704 3.296 11 O -0.580 6.580 12 N -0.719 5.719 13 C 0.127 3.873 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.305 4.305 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.066 4.066 26 C -0.092 4.092 27 C 0.094 3.906 28 N -0.308 5.308 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.180 0.820 37 H 0.125 0.875 38 H 0.407 0.593 39 H 0.408 0.592 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.396 0.604 43 H 0.274 0.726 44 H 0.143 0.857 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 16.256 26.147 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.224 4.224 4 N -0.095 5.095 5 C -0.090 4.090 6 C -0.192 4.192 7 C -0.120 4.120 8 C 0.057 3.943 9 N -0.337 5.337 10 C 0.404 3.596 11 O -0.458 6.458 12 N -0.376 5.376 13 C -0.001 4.001 14 C 0.214 3.786 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.090 4.090 26 C -0.113 4.113 27 C -0.060 4.060 28 N -0.134 5.134 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.197 0.803 37 H 0.143 0.857 38 H 0.242 0.758 39 H 0.246 0.754 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.230 0.770 43 H 0.084 0.916 44 H 0.161 0.839 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.542 15.431 27.523 32.037 hybrid contribution 0.494 0.604 -1.989 2.136 sum -5.048 16.035 25.535 30.571 Atomic orbital electron populations 1.22242 0.92998 1.03723 1.03368 1.21456 0.95293 0.92944 0.85880 1.22240 1.02560 0.93663 1.03985 1.48775 1.44859 1.07649 1.08251 1.22378 1.02108 0.98985 0.85529 1.19186 1.11704 0.93247 0.95015 1.19717 1.01574 0.97806 0.92893 1.16827 1.00461 0.94489 0.82489 1.42624 1.65810 1.16723 1.08510 1.15838 0.79759 0.82885 0.81137 1.90930 1.46297 1.36692 1.71880 1.44781 1.61156 1.20616 1.11041 1.20829 1.01572 0.87121 0.90549 1.19737 0.86593 0.85954 0.86343 1.90492 1.49188 1.28387 1.80410 1.41790 1.49612 1.15629 1.11292 1.19780 1.33512 1.02961 0.87203 0.87613 1.25325 0.97049 0.94893 1.00425 1.69620 1.42029 1.05593 1.36148 0.85758 0.78567 0.78652 0.81109 1.19142 1.20620 1.20625 1.20794 0.97593 0.97998 0.92624 1.19751 1.02432 0.95371 0.93761 1.20974 0.99055 0.95068 0.90869 1.77674 1.25662 0.91448 1.18652 0.91643 0.90152 0.91316 0.87459 0.89663 0.91221 0.91259 0.80344 0.85662 0.75792 0.75410 0.89766 0.89811 0.76990 0.91625 0.83929 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 9.52 37.15 0.35 -0.38 16 2 C 0.15 0.78 3.88 -67.93 -0.26 0.52 16 3 C -0.17 -0.47 8.81 37.16 0.33 -0.15 16 4 N -0.32 -2.95 3.47 -54.30 -0.19 -3.14 16 5 C 0.06 0.56 10.61 -16.56 -0.18 0.38 16 6 C -0.18 -2.08 6.33 -105.20 -0.67 -2.74 16 7 C -0.10 -1.05 9.95 -39.21 -0.39 -1.44 16 8 C 0.15 1.96 6.20 -84.06 -0.52 1.44 16 9 N -0.69 -8.52 5.32 -14.47 -0.08 -8.60 16 10 C 0.70 11.14 8.27 -86.92 -0.72 10.42 16 11 O -0.58 -10.91 14.01 5.28 0.07 -10.84 16 12 N -0.72 -11.63 5.53 -66.41 -0.37 -12.00 16 13 C 0.13 2.31 6.15 -5.19 -0.03 2.27 16 14 C 0.43 9.64 7.85 -10.99 -0.09 9.56 16 15 O -0.60 -15.00 15.24 5.55 0.08 -14.92 16 16 N -0.55 -13.44 5.29 -10.97 -0.06 -13.49 16 17 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 18 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.73 13.05 55.50 0.72 -23.00 16 21 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.07 -0.91 8.49 -39.81 -0.34 -1.25 16 26 C -0.09 -1.19 10.07 -39.43 -0.40 -1.59 16 27 C 0.09 1.25 7.49 -83.03 -0.62 0.62 16 28 N -0.31 -3.94 12.54 33.26 0.42 -3.52 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.15 7.05 -51.93 -0.37 -0.22 16 36 H 0.18 0.84 7.14 -52.49 -0.37 0.47 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.41 3.79 8.82 -40.82 -0.36 3.43 16 39 H 0.41 6.35 7.46 -40.82 -0.30 6.04 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.40 9.35 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.14 2.11 6.36 -52.48 -0.33 1.77 16 45 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -34.33 385.57 -8.17 -42.51 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -5.80 Total: 15.93 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -3.77 Total: 9.90 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.45 Total: -63.76 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: 0.16 Total: -25.76 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.33 -8.17 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349511431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.487 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds