Wall clock time and date at job start Wed Apr 1 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 N 1.46500 * 109.47190 * 239.99942 * 2 1 3 5 5 C 1.34103 * 125.03494 * 84.99916 * 4 2 1 6 6 C 1.38237 * 107.89652 * 179.97438 * 5 4 2 7 7 C 1.41150 * 134.73779 * 179.97438 * 6 5 4 8 8 C 1.36204 * 119.48480 * 180.08537 * 7 6 5 9 9 N 1.40126 * 119.21082 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99848 * 214.04678 * 9 8 7 11 11 O 1.21597 * 120.00124 * 5.32644 * 10 9 8 12 12 N 1.34779 * 120.00017 * 185.33482 * 10 9 8 13 13 C 1.46501 * 120.00015 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46986 * 179.97438 * 13 12 10 15 15 O 1.21286 * 119.99926 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99761 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99956 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00092 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00024 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00385 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46993 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47205 * 119.99538 * 21 19 17 24 24 H 1.48495 * 109.47306 * 239.99631 * 21 19 17 25 25 C 1.40207 * 121.57291 * 359.89619 * 8 7 6 26 26 C 1.35529 * 121.76026 * 0.07331 * 25 8 7 27 27 C 1.41181 * 119.70105 * 359.97438 * 26 25 8 28 28 N 1.32109 * 134.57310 * 180.27554 * 27 26 25 29 29 H 1.08998 * 109.47313 * 60.00264 * 1 2 3 30 30 H 1.08996 * 109.47642 * 300.00217 * 1 2 3 31 31 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47313 * 119.99736 * 2 1 3 33 33 H 1.08999 * 109.46788 * 59.99864 * 3 2 1 34 34 H 1.09002 * 109.47043 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46860 * 300.00013 * 3 2 1 36 36 H 1.07999 * 126.04609 * 0.02562 * 5 4 2 37 37 H 1.07999 * 120.25948 * 359.97438 * 7 6 5 38 38 H 0.96997 * 119.99700 * 34.04986 * 9 8 7 39 39 H 0.96993 * 119.99621 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47264 * 300.00085 * 13 12 10 41 41 H 1.08998 * 109.47195 * 59.99887 * 13 12 10 42 42 H 0.97005 * 120.00361 * 359.97438 * 16 14 13 43 43 H 0.96993 * 120.00512 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.11570 * 180.02562 * 25 8 7 45 45 H 1.08005 * 120.14837 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1847 -0.1222 -2.3993 6 6 2.6590 -1.0903 -3.2646 7 6 3.0192 -1.1128 -4.6292 8 6 3.4616 -2.2741 -5.1867 9 7 3.8170 -2.2901 -6.5420 10 6 3.5968 -3.3938 -7.2834 11 8 3.0027 -4.3401 -6.8036 12 7 4.0352 -3.4489 -8.5567 13 6 3.7963 -4.6488 -9.3625 14 6 4.3812 -4.4551 -10.7378 15 8 4.9420 -3.4167 -11.0174 16 7 4.2803 -5.4353 -11.6571 17 6 4.8129 -5.2593 -12.9081 18 1 5.3130 -4.3350 -13.1570 19 6 4.7083 -6.2697 -13.8562 20 7 4.0993 -7.3943 -13.5537 21 14 5.4334 -6.0296 -15.5609 22 1 6.0615 -4.6868 -15.6470 23 1 6.4598 -7.0726 -15.8137 24 1 4.3560 -6.1389 -16.5770 25 6 3.5713 -3.4535 -4.4364 26 6 3.2419 -3.4964 -3.1225 27 6 2.7749 -2.3292 -2.4799 28 7 2.3867 -2.0397 -1.2508 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.9843 0.9095 -2.6479 37 1 2.9428 -0.2167 -5.2270 38 1 4.2216 -1.5068 -6.9465 39 1 4.5089 -2.6940 -8.9396 40 1 4.2677 -5.5074 -8.8843 41 1 2.7235 -4.8230 -9.4456 42 1 3.8314 -6.2657 -11.4336 43 1 4.0267 -8.0997 -14.2153 44 1 3.9272 -4.3519 -4.9187 45 1 3.3370 -4.4191 -2.5692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349511431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:12 Heat of formation + Delta-G solvation = 10.092403 kcal Electronic energy + Delta-G solvation = -28118.994831 eV Core-core repulsion = 23944.356825 eV Total energy + Delta-G solvation = -4174.638005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.36341 -41.47406 -40.16157 -38.65917 -36.53337 -36.17776 -35.33857 -34.60769 -33.34794 -32.73988 -30.57410 -29.86759 -28.60002 -28.13537 -26.38852 -25.32299 -23.46888 -22.27528 -21.84293 -21.35351 -20.94354 -20.11854 -19.64782 -18.85475 -17.86249 -17.55883 -17.35676 -16.90123 -16.52036 -16.33321 -16.28722 -15.80766 -15.63978 -15.36371 -15.28041 -14.94645 -14.85225 -14.26587 -14.16294 -13.96447 -13.93606 -13.66820 -13.53114 -13.22540 -13.15895 -12.96361 -12.88752 -12.60827 -12.42352 -12.28738 -12.09716 -12.03924 -11.55965 -11.52187 -11.29569 -11.24343 -10.66067 -10.53439 -10.17167 -10.05691 -9.44674 -8.49200 -8.29713 -5.99278 -0.32838 0.76052 1.36770 1.39323 1.44067 1.45696 1.53220 1.60296 1.91804 2.07518 2.29971 2.90664 3.01139 3.18319 3.20794 3.31900 3.65585 3.81013 3.90291 4.06714 4.08930 4.22158 4.32125 4.34721 4.42156 4.48558 4.49572 4.57885 4.65146 4.74614 4.80909 4.85709 5.08697 5.14555 5.19475 5.24200 5.27391 5.36064 5.40737 5.48747 5.56523 5.92652 5.95523 6.00315 6.04587 6.50083 6.66820 6.97334 7.05670 7.43259 7.49869 7.96604 8.67902 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.001516 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.399792 B =18465.241119 C =18797.881321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.160 4.160 4 N -0.313 5.313 5 C 0.095 3.905 6 C -0.211 4.211 7 C -0.065 4.065 8 C 0.117 3.883 9 N -0.670 5.670 10 C 0.705 3.295 11 O -0.613 6.613 12 N -0.717 5.717 13 C 0.141 3.859 14 C 0.434 3.566 15 O -0.623 6.623 16 N -0.560 5.560 17 C -0.336 4.336 18 H 0.087 0.913 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.075 4.075 26 C -0.108 4.108 27 C 0.072 3.928 28 N -0.348 5.348 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.228 0.772 37 H 0.160 0.840 38 H 0.422 0.578 39 H 0.413 0.587 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.399 0.601 43 H 0.279 0.721 44 H 0.123 0.877 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 19.308 26.879 33.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.218 4.218 4 N -0.088 5.088 5 C -0.062 4.062 6 C -0.221 4.221 7 C -0.088 4.088 8 C 0.021 3.979 9 N -0.319 5.319 10 C 0.405 3.595 11 O -0.493 6.493 12 N -0.375 5.375 13 C 0.013 3.987 14 C 0.221 3.779 15 O -0.511 6.511 16 N -0.195 5.195 17 C -0.466 4.466 18 H 0.105 0.895 19 C -0.211 4.211 20 N -0.557 5.557 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.099 4.099 26 C -0.130 4.130 27 C -0.080 4.080 28 N -0.176 5.176 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.244 0.756 37 H 0.177 0.823 38 H 0.261 0.739 39 H 0.251 0.749 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.224 18.506 28.311 34.391 hybrid contribution 0.625 -0.178 -1.973 2.077 sum -5.599 18.328 26.338 32.572 Atomic orbital electron populations 1.22228 0.92009 1.02617 1.04966 1.21882 0.96018 0.94209 0.84366 1.22256 1.02089 0.91588 1.05880 1.49232 1.43170 1.06707 1.09656 1.23121 0.98569 1.00213 0.84329 1.19535 1.13548 0.93428 0.95623 1.20015 0.98056 0.97967 0.92807 1.16890 1.03493 0.95051 0.82436 1.42328 1.65252 1.16174 1.08166 1.15887 0.79390 0.83357 0.80842 1.90913 1.47793 1.38189 1.72413 1.44646 1.61550 1.20113 1.11156 1.20616 1.01733 0.88323 0.88042 1.20397 0.85183 0.84877 0.87396 1.90468 1.50001 1.29290 1.81332 1.41836 1.50209 1.16249 1.11223 1.19785 1.35040 1.02944 0.88794 0.89481 1.26117 0.96989 0.94345 1.03659 1.69686 1.42469 1.06092 1.37407 0.84812 0.78036 0.78458 0.76675 1.19355 1.19758 1.19720 1.20686 0.98198 0.97996 0.92984 1.19777 1.03389 0.95981 0.93804 1.21125 0.99431 0.95852 0.91607 1.77621 1.27454 0.93757 1.18792 0.91072 0.87523 0.93748 0.87909 0.87432 0.91923 0.89755 0.75595 0.82279 0.73946 0.74926 0.88800 0.88870 0.76698 0.91125 0.85913 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.52 71.98 0.69 -0.33 16 2 C 0.14 1.12 3.88 44.99 0.17 1.30 16 3 C -0.16 -0.28 8.81 71.98 0.63 0.35 16 4 N -0.31 -5.18 3.47 -325.71 -1.13 -6.31 16 5 C 0.09 1.31 10.61 84.35 0.89 2.21 16 6 C -0.21 -4.46 6.33 -20.24 -0.13 -4.58 16 7 C -0.06 -1.28 9.95 22.51 0.22 -1.06 16 8 C 0.12 2.94 6.20 37.82 0.23 3.18 16 9 N -0.67 -16.09 5.32 -317.96 -1.69 -17.78 16 10 C 0.70 22.28 8.27 179.05 1.48 23.76 16 11 O -0.61 -23.52 14.01 -4.02 -0.06 -23.57 16 12 N -0.72 -22.98 5.53 -482.28 -2.67 -25.65 16 13 C 0.14 5.10 6.15 85.63 0.53 5.63 16 14 C 0.43 19.75 7.85 87.66 0.69 20.44 16 15 O -0.62 -31.53 15.24 -3.05 -0.05 -31.57 16 16 N -0.56 -27.88 5.29 -307.00 -1.62 -29.50 16 17 C -0.34 -18.41 9.68 84.04 0.81 -17.60 16 18 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 19 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 20 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 21 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.07 -2.16 8.49 22.12 0.19 -1.98 16 26 C -0.11 -3.00 10.07 22.37 0.23 -2.77 16 27 C 0.07 1.94 7.49 42.15 0.32 2.26 16 28 N -0.35 -8.96 12.54 -48.68 -0.61 -9.57 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.08 -0.07 7.05 -2.39 -0.02 -0.09 16 36 H 0.23 0.80 7.14 -2.91 -0.02 0.78 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.42 7.19 8.82 -92.71 -0.82 6.37 16 39 H 0.41 12.61 7.46 -92.71 -0.69 11.92 16 40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.40 19.16 7.90 -92.70 -0.73 18.43 16 43 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.12 3.94 6.36 -2.91 -0.02 3.92 16 45 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -76.68 385.57 0.74 -75.95 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -1.17 Total: 42.02 kcal Atomic # 6 Polarization: 23.29 SS G_CDS: 7.42 Total: 30.71 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -7.44 Total: -137.18 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.10 Total: -55.15 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -76.68 0.74 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349511431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.042 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds