Wall clock time and date at job start Wed Apr 1 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 C 1.52996 * 109.47332 * 120.00441 * 2 1 3 5 5 H 1.09008 * 109.47229 * 59.99815 * 4 2 1 6 6 N 1.46500 * 109.47098 * 300.00102 * 4 2 1 7 7 C 1.34773 * 120.00431 * 85.00044 * 6 4 2 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.50701 * 109.46923 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00145 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00027 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00241 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99866 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46710 * 90.00048 * 15 13 11 17 17 H 1.48500 * 109.46865 * 209.99357 * 15 13 11 18 18 H 1.48491 * 109.47392 * 329.99819 * 15 13 11 19 19 C 1.50698 * 109.47387 * 179.97438 * 4 2 1 20 20 N 1.30980 * 126.44004 * 255.00525 * 19 4 2 21 21 C 1.35215 * 105.58107 * 180.02562 * 20 19 4 22 22 C 1.48420 * 126.41640 * 180.02562 * 21 20 19 23 23 C 1.39758 * 120.53638 * 179.97438 * 22 21 20 24 24 C 1.38414 * 118.31018 * 179.97438 * 23 22 21 25 25 C 1.38309 * 119.28637 * 0.02562 * 24 23 22 26 26 N 1.31898 * 121.01910 * 0.02562 * 25 24 23 27 27 C 1.31736 * 121.85510 * 359.65674 * 26 25 24 28 28 N 1.30761 * 107.16798 * 359.97438 * 21 20 19 29 29 O 1.21285 * 110.09996 * 359.71403 * 28 21 20 30 30 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46808 * 299.99697 * 1 2 3 32 32 H 1.08994 * 109.47021 * 59.99547 * 1 2 3 33 33 H 1.09003 * 109.46808 * 240.00303 * 2 1 3 34 34 H 1.08998 * 109.47193 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47432 * 300.00734 * 3 2 1 36 36 H 1.09003 * 109.46936 * 60.00381 * 3 2 1 37 37 H 0.97000 * 119.99456 * 264.99607 * 6 4 2 38 38 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 39 39 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 40 40 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 41 41 H 0.97003 * 119.99905 * 179.97438 * 14 13 11 42 42 H 1.07995 * 120.84455 * 359.97438 * 23 22 21 43 43 H 1.08007 * 120.35592 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.49357 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.70274 * 180.31228 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -1.7491 1.2491 6 7 1.5517 -0.0308 2.4454 7 6 0.3298 -0.3167 2.9369 8 8 -0.3675 -1.1474 2.3873 9 7 -0.1171 0.3146 4.0406 10 6 -1.4430 -0.0005 4.5784 11 6 -1.6990 0.8359 5.8056 12 1 -0.9491 1.5323 6.1506 13 6 -2.8907 0.7123 6.4877 14 7 -3.1144 1.4425 7.5584 15 14 -4.1877 -0.4927 5.8913 16 1 -3.9690 -1.8135 6.5340 17 1 -5.5366 0.0147 6.2494 18 1 -4.0884 -0.6371 4.4168 19 6 3.5471 -0.7219 1.2488 20 7 4.3246 -1.7400 0.9759 21 6 5.5883 -1.2755 1.1009 22 6 6.8366 -2.0509 0.8926 23 6 8.0850 -1.4440 1.0553 24 6 9.2192 -2.2104 0.8501 25 6 9.0821 -3.5397 0.4934 26 7 7.8900 -4.0845 0.3463 27 6 6.7828 -3.3965 0.5369 28 7 5.5047 -0.0150 1.4384 29 8 4.3414 0.3180 1.5212 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8898 36 1 1.6768 1.9563 0.8901 37 1 2.1080 0.6321 2.8837 38 1 0.4391 0.9776 4.4789 39 1 -2.2011 0.2162 3.8259 40 1 -1.4858 -1.0568 4.8437 41 1 -3.9530 1.3557 8.0381 42 1 8.1628 -0.4036 1.3340 43 1 10.2007 -1.7751 0.9672 44 1 9.9649 -4.1407 0.3320 45 1 5.8247 -3.8790 0.4118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:48 Heat of formation + Delta-G solvation = 76.006902 kcal Electronic energy + Delta-G solvation = -29437.646375 eV Core-core repulsion = 25265.866637 eV Total energy + Delta-G solvation = -4171.779738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.97405 -40.57528 -40.03725 -37.15541 -36.35210 -34.29649 -33.66906 -33.13925 -32.46920 -32.17290 -31.32268 -28.36401 -27.23286 -26.85546 -25.56061 -24.39850 -23.32229 -22.37743 -21.91097 -20.71812 -19.89330 -18.72605 -18.54222 -18.21874 -17.45018 -16.78136 -16.42746 -16.22613 -16.00155 -15.81854 -14.92851 -14.61915 -14.50907 -14.37308 -14.17641 -13.98381 -13.66395 -13.63730 -13.15945 -12.98928 -12.55141 -12.53218 -12.43655 -12.34735 -12.19559 -11.90921 -11.72402 -11.52836 -11.09118 -11.00053 -10.90526 -10.82829 -10.75244 -10.26405 -10.05251 -9.99425 -9.71701 -9.49337 -9.36795 -9.10361 -8.79157 -8.13666 -6.22717 -4.25184 0.06289 0.69777 0.84708 1.98715 2.31660 2.69665 3.13253 3.26495 3.33173 3.33776 3.41014 3.54750 3.62814 3.98683 4.28024 4.32096 4.32484 4.36249 4.53351 4.64802 4.74434 4.78909 4.90174 4.98901 5.11514 5.12847 5.23354 5.34573 5.39745 5.49352 5.57065 5.61645 5.65010 5.76520 5.95795 5.99396 6.07820 6.18507 6.39878 6.54693 6.64145 7.06957 7.13378 7.29972 7.39902 7.43773 7.69962 8.22285 8.58291 8.76355 9.05046 9.37374 10.89145 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002159 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.240485 B =12962.952186 C =13480.114637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.153 4.153 4 C 0.267 3.733 5 H 0.135 0.865 6 N -0.750 5.750 7 C 0.702 3.298 8 O -0.590 6.590 9 N -0.718 5.718 10 C 0.239 3.761 11 C -0.544 4.544 12 H 0.079 0.921 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.259 1.259 19 C 0.194 3.806 20 N -0.463 5.463 21 C 0.213 3.787 22 C -0.073 4.073 23 C -0.040 4.040 24 C -0.174 4.174 25 C 0.114 3.886 26 N -0.482 5.482 27 C 0.148 3.852 28 N -0.371 5.371 29 O 0.091 5.909 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.394 0.606 39 H 0.025 0.975 40 H 0.020 0.980 41 H 0.268 0.732 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.163 0.837 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.382 -3.624 -16.821 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 C -0.210 4.210 4 C 0.158 3.842 5 H 0.153 0.847 6 N -0.409 5.409 7 C 0.402 3.598 8 O -0.469 6.469 9 N -0.370 5.370 10 C 0.117 3.883 11 C -0.582 4.582 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.529 5.529 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.184 1.184 19 C -0.028 4.028 20 N -0.195 5.195 21 C -0.057 4.057 22 C -0.076 4.076 23 C -0.068 4.068 24 C -0.194 4.194 25 C -0.043 4.043 26 N -0.190 5.190 27 C -0.012 4.012 28 N -0.076 5.076 29 O 0.029 5.971 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.227 0.773 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.180 0.820 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 22.267 -5.138 -17.336 28.683 hybrid contribution -0.147 1.131 0.613 1.295 sum 22.120 -4.007 -16.722 28.018 Atomic orbital electron populations 1.21835 0.91995 1.03478 1.02003 1.21636 0.98526 0.96665 0.95639 1.21932 1.00291 0.95728 1.03083 1.19305 0.77183 1.00843 0.86872 0.84735 1.45060 1.18831 1.46387 1.30633 1.15891 0.80649 0.82006 0.81282 1.90904 1.56809 1.37181 1.62018 1.45421 1.21088 1.43384 1.27088 1.19396 0.78450 0.96387 0.94100 1.21078 1.03752 1.23938 1.09419 0.90283 1.24784 0.97931 0.95542 0.94376 1.69879 1.25430 1.39771 1.17853 0.86815 0.80948 0.81490 0.80416 1.19870 1.20963 1.18376 1.28918 0.98248 0.81207 0.94385 1.71971 0.99379 1.27565 1.20605 1.23644 0.92664 0.88576 1.00859 1.18369 0.88591 0.94621 1.06060 1.21659 0.90809 1.00797 0.93509 1.22130 0.99609 0.95581 1.02055 1.23045 0.95684 0.92856 0.92684 1.67847 0.98460 1.38429 1.14303 1.23013 0.97869 0.89184 0.91087 1.74877 0.97567 1.15162 1.20027 1.85318 1.11116 1.37314 1.63304 0.91230 0.91478 0.93040 0.89934 0.93184 0.91898 0.91505 0.76708 0.77305 0.95680 0.96222 0.92249 0.83913 0.83800 0.81998 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.72 37.16 0.29 -1.39 16 2 C -0.10 -1.07 2.79 -90.62 -0.25 -1.32 16 3 C -0.15 -1.42 8.69 37.16 0.32 -1.10 16 4 C 0.27 3.06 2.55 -69.09 -0.18 2.88 16 5 H 0.14 1.71 7.58 -51.92 -0.39 1.32 16 6 N -0.75 -9.47 4.20 -59.81 -0.25 -9.72 16 7 C 0.70 12.07 6.92 -86.92 -0.60 11.47 16 8 O -0.59 -11.92 13.46 5.28 0.07 -11.85 16 9 N -0.72 -13.54 5.55 -66.41 -0.37 -13.91 16 10 C 0.24 5.61 4.50 -5.19 -0.02 5.58 16 11 C -0.54 -14.47 9.83 -34.44 -0.34 -14.81 16 12 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 15 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 19 C 0.19 2.19 6.62 -12.99 -0.09 2.10 16 20 N -0.46 -5.59 11.28 -9.89 -0.11 -5.71 16 21 C 0.21 2.49 7.82 -156.12 -1.22 1.27 16 22 C -0.07 -0.73 5.89 -104.74 -0.62 -1.35 16 23 C -0.04 -0.32 9.83 -38.95 -0.38 -0.70 16 24 C -0.17 -1.05 10.10 -39.49 -0.40 -1.44 16 25 C 0.11 0.78 11.17 -17.50 -0.20 0.59 16 26 N -0.48 -4.63 10.35 -12.98 -0.13 -4.76 16 27 C 0.15 1.46 10.87 -17.20 -0.19 1.28 16 28 N -0.37 -4.39 11.93 30.96 0.37 -4.02 16 29 O 0.09 1.01 9.52 18.06 0.17 1.19 16 30 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 31 H 0.07 1.00 5.77 -51.93 -0.30 0.70 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.45 6.13 -51.93 -0.32 0.13 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.65 7.60 -51.93 -0.39 0.26 16 37 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 38 H 0.39 6.56 8.34 -40.82 -0.34 6.22 16 39 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.14 1.01 7.95 -52.49 -0.42 0.60 16 43 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 45 H 0.17 1.59 7.89 -52.49 -0.41 1.17 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -32.19 377.95 -8.19 -40.38 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.77 Total: 6.58 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.97 Total: 5.11 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.28 Total: -63.41 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.24 Total: -10.66 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.19 -8.19 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.390 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds