Wall clock time and date at job start Wed Apr 1 2020 04:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47526 * 46.24874 * 3 2 1 5 5 C 1.36936 * 119.99845 * 270.00170 * 4 3 2 6 6 H 1.08000 * 120.00132 * 189.05782 * 5 4 3 7 7 C 1.38807 * 120.00186 * 9.05398 * 5 4 3 8 8 N 1.31624 * 120.00216 * 25.27895 * 7 5 4 9 9 Si 1.86800 * 120.00452 * 205.28258 * 7 5 4 10 10 H 1.48504 * 109.46784 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47411 * 119.99829 * 9 7 5 12 12 H 1.48500 * 109.47080 * 240.00190 * 9 7 5 13 13 C 1.46505 * 119.99955 * 89.99578 * 4 3 2 14 14 C 1.50692 * 109.46970 * 91.21879 * 13 4 3 15 15 O 1.21283 * 120.00257 * 359.97438 * 14 13 4 16 16 N 1.34778 * 119.99966 * 179.97438 * 14 13 4 17 17 C 1.47084 * 120.85836 * 0.02562 * 16 14 13 18 18 C 1.53241 * 108.51672 * 231.11937 * 17 16 14 19 19 N 1.46901 * 109.36053 * 306.20935 * 18 17 16 20 20 C 1.39851 * 111.00011 * 187.24154 * 19 18 17 21 21 C 1.38826 * 120.07927 * 59.72363 * 20 19 18 22 22 C 1.38152 * 119.94589 * 179.69683 * 21 20 19 23 23 C 1.38276 * 120.11406 * 0.58087 * 22 21 20 24 24 C 1.38284 * 120.15763 * 359.72267 * 23 22 21 25 25 C 1.38280 * 120.05249 * 359.97306 * 24 23 22 26 26 F 1.35096 * 120.05723 * 180.02562 * 25 24 23 27 27 C 1.46897 * 111.26853 * 63.09143 * 19 18 17 28 28 C 1.47077 * 120.88158 * 179.97438 * 16 14 13 29 29 H 4.40647 * 5.51353 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.47397 * 286.24264 * 3 2 1 31 31 H 1.09008 * 109.46939 * 166.24623 * 3 2 1 32 32 H 0.96994 * 120.00173 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46879 * 331.21336 * 13 4 3 34 34 H 1.09002 * 109.46554 * 211.21941 * 13 4 3 35 35 H 1.09003 * 109.60809 * 111.42325 * 17 16 14 36 36 H 1.08998 * 109.65355 * 350.83708 * 17 16 14 37 37 H 1.08999 * 109.49604 * 186.24263 * 18 17 16 38 38 H 1.09002 * 109.49352 * 66.18019 * 18 17 16 39 39 H 1.07995 * 120.02946 * 359.97438 * 21 20 19 40 40 H 1.08003 * 119.94226 * 180.27370 * 22 21 20 41 41 H 1.08004 * 119.92070 * 179.73708 * 23 22 21 42 42 H 1.08006 * 119.97482 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.49550 * 56.85665 * 27 19 18 44 44 H 1.09003 * 109.49421 * 176.90807 * 27 19 18 45 45 H 1.08996 * 109.63126 * 9.14361 * 28 16 14 46 46 H 1.08999 * 109.63315 * 248.56241 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -0.9543 -0.9977 5 6 3.3636 -2.2572 -0.6439 6 1 3.8594 -2.9248 -1.3330 7 6 2.9583 -2.7199 0.6005 8 7 1.9626 -2.1318 1.2291 9 14 3.8262 -4.1771 1.3832 10 1 4.9033 -4.6554 0.4797 11 1 4.4160 -3.7631 2.6816 12 1 2.8487 -5.2718 1.6102 13 6 3.3787 -0.5152 -2.3740 14 6 4.8101 -0.0645 -2.5112 15 8 5.5532 -0.1055 -1.5536 16 7 5.2645 0.3841 -3.6981 17 6 4.3796 0.4423 -4.8715 18 6 5.0769 -0.2589 -6.0422 19 7 6.4089 0.3287 -6.2382 20 6 7.0115 -0.1708 -7.3972 21 6 6.4018 0.0093 -8.6313 22 6 7.0025 -0.4798 -9.7752 23 6 8.2041 -1.1589 -9.6917 24 6 8.8122 -1.3464 -8.4640 25 6 8.2200 -0.8542 -7.3155 26 9 8.8143 -1.0368 -6.1161 27 6 7.2651 0.1118 -5.0644 28 6 6.6576 0.8292 -3.8537 29 1 -1.0499 0.0000 -0.0003 30 1 3.0094 -0.2866 0.9866 31 1 3.0088 0.9991 -0.2443 32 1 1.6792 -2.4554 2.0984 33 1 2.7122 0.3130 -2.6146 34 1 3.1912 -1.3430 -3.0579 35 1 4.1848 1.4828 -5.1315 36 1 3.4407 -0.0642 -4.6482 37 1 4.4853 -0.1292 -6.9484 38 1 5.1771 -1.3217 -5.8220 39 1 5.4609 0.5353 -8.6977 40 1 6.5303 -0.3358 -10.7358 41 1 8.6688 -1.5437 -10.5875 42 1 9.7510 -1.8770 -8.4022 43 1 7.3348 -0.9561 -4.8574 44 1 8.2605 0.5097 -5.2616 45 1 7.2244 0.5786 -2.9570 46 1 6.6818 1.9068 -4.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491569825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:43 Heat of formation + Delta-G solvation = 63.253038 kcal Electronic energy + Delta-G solvation = -30225.605560 eV Core-core repulsion = 26033.352811 eV Total energy + Delta-G solvation = -4192.252749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.28815 -41.37507 -40.26384 -38.59233 -37.50212 -35.63851 -33.50952 -33.27803 -32.40488 -31.49675 -31.04011 -29.12912 -27.98654 -27.25369 -25.37392 -24.05661 -23.29765 -22.97398 -22.28138 -20.08864 -19.46932 -18.78172 -18.28286 -18.09062 -17.51228 -17.22845 -17.13631 -16.99655 -16.62934 -16.31425 -16.02207 -15.54147 -15.49565 -15.38737 -15.08290 -14.95093 -14.85413 -14.29567 -14.10240 -14.05711 -13.44611 -13.34097 -13.29863 -13.08835 -12.92290 -12.82448 -12.58845 -12.51407 -12.34969 -12.27822 -12.17573 -11.96518 -11.84458 -11.07726 -10.85632 -10.78753 -10.59044 -10.25887 -9.81082 -9.59907 -9.05735 -8.88762 -7.88823 -5.22342 0.18171 0.27791 1.39824 1.45577 1.53992 1.80286 1.95575 2.34981 2.51410 2.53338 2.61237 2.73833 3.22636 3.24251 3.63140 3.70738 3.75672 3.84542 3.96451 4.02739 4.13827 4.15339 4.25179 4.29982 4.37478 4.39576 4.46449 4.49299 4.58578 4.61391 4.65492 4.77854 4.81950 4.87705 4.98012 5.04650 5.11633 5.31113 5.31957 5.50536 5.54668 5.57842 5.68324 5.70678 5.76842 6.15773 6.18044 6.48374 7.03583 7.37563 7.38868 7.76889 8.14231 9.12677 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.002644 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.503539 B =10589.206818 C =11332.395237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.132 4.132 3 C 0.276 3.724 4 N -0.582 5.582 5 C -0.261 4.261 6 H 0.067 0.933 7 C -0.041 4.041 8 N -0.905 5.905 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.289 1.289 13 C 0.137 3.863 14 C 0.484 3.516 15 O -0.573 6.573 16 N -0.621 5.621 17 C 0.110 3.890 18 C 0.044 3.956 19 N -0.484 5.484 20 C 0.066 3.934 21 C -0.112 4.112 22 C -0.098 4.098 23 C -0.116 4.116 24 C -0.138 4.138 25 C 0.015 3.985 26 F -0.152 7.152 27 C 0.045 3.955 28 C 0.112 3.888 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.032 0.968 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.142 0.858 43 H 0.035 0.965 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 6.938 -27.063 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.134 4.134 3 C 0.151 3.849 4 N -0.300 5.300 5 C -0.390 4.390 6 H 0.085 0.915 7 C -0.237 4.237 8 N -0.550 5.550 9 Si 0.779 3.221 10 H -0.205 1.205 11 H -0.221 1.221 12 H -0.216 1.216 13 C 0.006 3.994 14 C 0.271 3.729 15 O -0.451 6.451 16 N -0.358 5.358 17 C -0.012 4.012 18 C -0.082 4.082 19 N -0.200 5.200 20 C -0.032 4.032 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.134 4.134 24 C -0.158 4.158 25 C -0.007 4.007 26 F -0.131 7.131 27 C -0.083 4.083 28 C -0.011 4.011 29 H 0.243 0.757 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.050 0.950 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.053 0.947 44 H 0.120 0.880 45 H 0.088 0.912 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.875 7.355 -26.303 28.425 hybrid contribution 0.863 -1.800 1.588 2.551 sum 8.738 5.555 -24.715 26.797 Atomic orbital electron populations 1.24970 0.96177 1.05383 1.03584 1.24318 0.95624 0.95956 0.97543 1.17548 0.83387 0.90119 0.93821 1.43774 1.74209 1.06537 1.05517 1.19277 1.31677 0.87662 1.00408 0.91518 1.25314 0.97935 1.01220 0.99202 1.70302 1.24859 1.44197 1.15610 0.85493 0.78567 0.79696 0.78359 1.20466 1.22071 1.21583 1.20893 0.90663 1.00589 0.87216 1.23011 0.92602 0.75607 0.81706 1.90621 1.59387 1.55174 1.39926 1.48522 1.11967 1.64836 1.10425 1.22087 0.93163 1.03071 0.82899 1.22782 0.88409 0.96136 1.00860 1.59309 1.04277 1.55125 1.01253 1.19311 0.94041 0.96675 0.93179 1.21050 1.01761 1.01161 0.89245 1.21537 0.94957 0.95897 0.99273 1.21361 0.95895 0.99088 0.97073 1.21333 1.01651 1.01183 0.91592 1.18279 0.96348 1.04555 0.81510 1.91442 1.84000 1.93905 1.43753 1.23152 0.96940 0.98853 0.89314 1.21718 0.82620 0.99296 0.97463 0.75734 0.92010 0.92956 0.94197 0.88299 0.89169 0.88411 0.87436 0.85487 0.94974 0.82610 0.81865 0.82331 0.83972 0.94688 0.87956 0.91216 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.39 19.25 74.32 1.43 -10.96 16 2 C -0.13 -6.44 11.45 31.12 0.36 -6.08 16 3 C 0.28 13.98 5.46 84.57 0.46 14.44 16 4 N -0.58 -29.45 1.98 -716.92 -1.42 -30.87 16 5 C -0.26 -14.73 9.69 84.03 0.81 -13.92 16 6 H 0.07 3.76 7.95 -2.91 -0.02 3.74 16 7 C -0.04 -2.32 4.88 84.86 0.41 -1.91 16 8 N -0.90 -53.11 9.18 21.65 0.20 -52.91 16 9 Si 0.95 47.27 29.62 68.60 2.03 49.31 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 C 0.14 5.31 4.51 85.63 0.39 5.70 16 14 C 0.48 19.03 7.77 87.65 0.68 19.71 16 15 O -0.57 -28.64 15.88 -3.04 -0.05 -28.69 16 16 N -0.62 -18.33 3.01 -817.85 -2.46 -20.79 16 17 C 0.11 2.17 6.50 86.35 0.56 2.73 16 18 C 0.04 0.79 5.46 86.38 0.47 1.26 16 19 N -0.48 -9.99 4.67 -693.99 -3.24 -13.23 16 20 C 0.07 1.25 5.57 38.20 0.21 1.47 16 21 C -0.11 -1.42 9.16 22.39 0.21 -1.21 16 22 C -0.10 -0.90 10.04 22.26 0.22 -0.67 16 23 C -0.12 -1.20 10.04 22.29 0.22 -0.97 16 24 C -0.14 -2.17 10.02 22.29 0.22 -1.94 16 25 C 0.01 0.31 6.96 22.48 0.16 0.47 16 26 F -0.15 -3.89 12.25 44.97 0.55 -3.34 16 27 C 0.05 1.15 3.98 86.40 0.34 1.49 16 28 C 0.11 3.17 6.60 86.36 0.57 3.74 16 29 H 0.23 7.81 7.80 -4.42 -0.03 7.78 16 30 H 0.06 3.56 6.35 -2.39 -0.02 3.54 16 31 H 0.05 2.40 8.07 -2.38 -0.02 2.38 16 32 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.10 3.25 7.92 -2.39 -0.02 3.23 16 34 H 0.09 3.24 7.57 -2.39 -0.02 3.22 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.90 6.02 -2.39 -0.01 1.88 16 37 H 0.13 1.42 6.89 -2.39 -0.02 1.40 16 38 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.16 1.29 7.39 -2.91 -0.02 1.27 16 40 H 0.16 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.03 1.06 6.89 -2.39 -0.02 1.04 16 44 H 0.10 2.53 6.39 -2.39 -0.02 2.52 16 45 H 0.07 2.35 7.06 -2.39 -0.02 2.34 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.94 378.46 4.34 -72.59 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.99 Total: 14.60 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 7.74 Total: 13.33 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -6.92 Total: -117.80 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.69 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.55 Total: -3.34 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.31 kcal Total: -76.94 4.34 -72.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491569825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.847 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds