Wall clock time and date at job start Wed Apr 1 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35736 * 116.99502 * 2 1 4 4 C 1.38869 * 119.94506 * 0.25141 * 3 2 1 5 5 C 1.37750 * 120.15877 * 180.25850 * 4 3 2 6 6 C 1.39749 * 120.03348 * 359.73812 * 5 4 3 7 7 C 1.47613 * 120.06164 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00045 * 150.14461 * 7 6 5 9 9 N 1.34779 * 120.00233 * 330.14469 * 7 6 5 10 10 C 1.46503 * 119.99739 * 6.23559 * 9 7 6 11 11 C 1.50704 * 109.47063 * 98.14168 * 10 9 7 12 12 H 1.07999 * 119.99818 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99938 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00439 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00196 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46840 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47293 * 119.99805 * 15 13 11 18 18 H 1.48498 * 109.47575 * 240.00217 * 15 13 11 19 19 C 1.46493 * 120.00400 * 186.23454 * 9 7 6 20 20 C 1.53000 * 109.47376 * 119.80928 * 19 9 7 21 21 C 1.53007 * 109.47191 * 239.81336 * 19 9 7 22 22 C 1.39659 * 119.88003 * 0.02562 * 6 5 4 23 23 C 1.38288 * 119.83973 * 359.97438 * 22 6 5 24 24 N 1.40369 * 120.01459 * 179.97438 * 23 22 6 25 25 C 1.35033 * 127.38499 * 359.97438 * 24 23 22 26 26 N 1.30760 * 107.27607 * 180.02562 * 25 24 23 27 27 N 1.28417 * 110.63847 * 0.02562 * 26 25 24 28 28 N 1.28944 * 110.20326 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47404 * 300.00627 * 1 2 3 31 31 H 1.09004 * 109.46692 * 60.00274 * 1 2 3 32 32 H 1.07998 * 119.92398 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.98690 * 179.72881 * 5 4 3 34 34 H 1.08993 * 109.47350 * 218.14688 * 10 9 7 35 35 H 1.09000 * 109.47060 * 338.14823 * 10 9 7 36 36 H 0.96993 * 120.00746 * 180.02562 * 14 13 11 37 37 H 1.09010 * 109.47059 * 359.80737 * 19 9 7 38 38 H 1.08996 * 109.46738 * 60.00026 * 20 19 9 39 39 H 1.08996 * 109.46753 * 180.02562 * 20 19 9 40 40 H 1.08998 * 109.46574 * 300.00196 * 20 19 9 41 41 H 1.09000 * 109.47119 * 59.99751 * 21 19 9 42 42 H 1.08997 * 109.46969 * 179.97438 * 21 19 9 43 43 H 1.08996 * 109.46534 * 299.99689 * 21 19 9 44 44 H 1.07999 * 120.07949 * 179.97438 * 22 6 5 45 45 H 1.08001 * 126.36311 * 0.03243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2876 2.3733 0.0053 5 6 1.9083 3.6031 -0.0001 6 6 3.3035 3.6824 -0.0053 7 6 3.9692 4.9998 -0.0116 8 8 5.0604 5.1321 0.5083 9 7 3.3676 6.0562 -0.5936 10 6 1.9979 5.9324 -1.0986 11 6 1.0352 6.4878 -0.0807 12 1 1.4066 6.8928 0.8490 13 6 -0.3194 6.4797 -0.3370 14 7 -0.7716 5.9870 -1.4694 15 14 -1.5127 7.1687 0.9243 16 1 -0.7567 7.6594 2.1045 17 1 -2.2745 8.2927 0.3228 18 1 -2.4554 6.1025 1.3481 19 6 4.0832 7.3280 -0.7214 20 6 4.2036 7.6992 -2.2008 21 6 3.3124 8.4235 0.0183 22 6 4.0669 2.5129 -0.0056 23 6 3.4385 1.2810 -0.0003 24 7 4.2021 0.1032 -0.0011 25 6 5.5484 -0.0010 -0.0073 26 7 5.8392 -1.2759 -0.0063 27 7 4.7682 -1.9844 -0.0003 28 7 3.7291 -1.2209 0.0033 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2093 2.3143 0.0090 33 1 1.3164 4.5064 -0.0004 34 1 1.9026 6.4893 -2.0306 35 1 1.7705 4.8817 -1.2783 36 1 -1.7246 5.9817 -1.6499 37 1 5.0791 7.2296 -0.2892 38 1 3.2078 7.7976 -2.6328 39 1 4.7365 8.6453 -2.2957 40 1 4.7527 6.9188 -2.7275 41 1 3.2267 8.1590 1.0722 42 1 3.8451 9.3697 -0.0764 43 1 2.3166 8.5219 -0.4139 44 1 5.1453 2.5704 -0.0101 45 1 6.2539 0.8167 -0.0121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542885336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:35 Heat of formation + Delta-G solvation = 92.180703 kcal Electronic energy + Delta-G solvation = -30993.209940 eV Core-core repulsion = 26822.131550 eV Total energy + Delta-G solvation = -4171.078390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.23886 -41.86178 -40.70374 -38.54022 -37.56900 -36.33362 -34.89031 -33.35056 -33.20470 -31.65623 -30.93691 -29.38567 -28.41584 -27.97757 -26.12656 -25.21530 -24.79868 -23.89772 -23.12940 -21.89186 -20.48921 -19.46531 -19.09755 -18.58238 -17.86150 -17.75004 -17.27765 -17.04877 -16.77045 -16.67209 -16.31219 -15.91630 -15.45982 -15.23899 -14.97565 -14.71326 -14.45603 -14.27922 -14.24634 -13.98939 -13.81071 -13.50241 -13.33125 -13.12423 -12.90215 -12.81409 -12.77755 -12.66580 -12.53120 -12.25798 -12.14119 -12.08557 -12.07153 -11.60138 -11.56184 -11.43174 -11.37573 -10.83528 -10.54333 -10.01509 -9.48529 -9.25149 -8.19633 -6.31795 -0.67684 -0.20851 0.50962 0.68776 1.19269 1.42099 1.50174 1.56809 1.77325 2.04328 2.23594 2.42159 2.62049 2.98530 3.09291 3.30248 3.62424 3.69610 3.70711 3.97719 4.09763 4.12463 4.21749 4.32365 4.35561 4.37543 4.37775 4.45828 4.49017 4.70942 4.74351 4.78164 4.88140 4.95619 5.06690 5.11422 5.14653 5.23502 5.26711 5.29212 5.47170 5.51157 5.59807 5.73166 5.86811 6.04629 6.13969 6.58139 6.83789 7.24495 7.31472 7.39902 8.83944 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.004001 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.326637 B = 6996.051162 C = 8953.584073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.304 6.304 3 C 0.168 3.832 4 C -0.201 4.201 5 C -0.049 4.049 6 C -0.165 4.165 7 C 0.558 3.442 8 O -0.588 6.588 9 N -0.584 5.584 10 C 0.219 3.781 11 C -0.537 4.537 12 H 0.061 0.939 13 C 0.039 3.961 14 N -0.903 5.903 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.277 1.277 19 C 0.131 3.869 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.016 4.016 23 C 0.058 3.942 24 N -0.311 5.311 25 C 0.229 3.771 26 N -0.352 5.352 27 N -0.072 5.072 28 N -0.075 5.075 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.193 0.807 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.270 0.730 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.170 0.830 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -3.200 0.196 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.215 6.215 3 C 0.118 3.882 4 C -0.221 4.221 5 C -0.067 4.067 6 C -0.169 4.169 7 C 0.348 3.652 8 O -0.472 6.472 9 N -0.313 5.313 10 C 0.099 3.901 11 C -0.575 4.575 12 H 0.079 0.921 13 C -0.164 4.164 14 N -0.541 5.541 15 Si 0.766 3.234 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.203 1.203 19 C 0.028 3.972 20 C -0.208 4.208 21 C -0.206 4.206 22 C -0.037 4.037 23 C -0.035 4.035 24 N -0.101 5.101 25 C -0.066 4.066 26 N -0.202 5.202 27 N -0.067 5.067 28 N -0.061 5.061 29 H 0.142 0.858 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.210 0.790 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.187 0.813 45 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 3.776 -4.783 0.328 6.103 hybrid contribution -1.267 1.508 0.480 2.027 sum 2.508 -3.276 0.807 4.204 Atomic orbital electron populations 1.23498 0.75808 1.06006 1.02777 1.86252 1.23832 1.24826 1.86606 1.19019 0.89895 0.86257 0.92995 1.21348 1.01586 0.90213 1.08907 1.23327 0.94631 1.01557 0.87172 1.19570 0.93968 0.92856 1.10479 1.18205 0.84428 0.84543 0.78022 1.90666 1.22804 1.85756 1.47944 1.48187 1.16194 1.10511 1.56370 1.20031 0.76456 0.99030 0.94559 1.21605 0.91232 1.40755 1.03925 0.92074 1.25437 0.99347 0.95020 0.96571 1.69991 1.15268 1.44908 1.23957 0.85776 0.79378 0.78456 0.79767 1.19765 1.20989 1.20254 1.21088 0.96024 0.83001 0.97098 1.22047 1.02135 1.02228 0.94392 1.22094 1.01447 0.97673 0.99373 1.20725 1.01477 0.87131 0.94396 1.16578 0.87490 0.82514 1.16953 1.48855 1.06574 1.06288 1.48357 1.28280 0.84463 0.98518 0.95359 1.74386 1.21513 1.01482 1.22847 1.78019 0.93119 1.23996 1.11593 1.82872 1.18487 0.83486 1.21254 0.85776 0.91197 0.91402 0.82369 0.79046 0.95816 0.92156 0.92087 0.89670 0.92886 0.89407 0.92892 0.94376 0.90404 0.91780 0.81298 0.70262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.36 16 2 O -0.30 -8.39 8.65 -90.60 -0.78 -9.18 16 3 C 0.17 4.90 6.71 22.73 0.15 5.06 16 4 C -0.20 -6.00 9.01 22.31 0.20 -5.79 16 5 C -0.05 -1.68 7.46 22.52 0.17 -1.51 16 6 C -0.16 -5.51 5.58 -20.09 -0.11 -5.62 16 7 C 0.56 20.89 7.45 86.72 0.65 21.54 16 8 O -0.59 -23.53 16.05 -3.99 -0.06 -23.60 16 9 N -0.58 -21.75 2.44 -805.76 -1.97 -23.71 16 10 C 0.22 8.93 4.31 85.63 0.37 9.30 16 11 C -0.54 -23.46 5.49 25.60 0.14 -23.32 16 12 H 0.06 2.78 6.74 -2.91 -0.02 2.76 16 13 C 0.04 1.74 5.33 84.65 0.45 2.19 16 14 N -0.90 -42.30 13.29 21.44 0.28 -42.02 16 15 Si 0.94 36.67 29.54 68.60 2.03 38.70 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 19 C 0.13 4.28 3.25 45.00 0.15 4.42 16 20 C -0.15 -4.17 9.15 71.98 0.66 -3.52 16 21 C -0.15 -4.72 8.08 71.98 0.58 -4.14 16 22 C -0.02 -0.44 9.03 22.63 0.20 -0.23 16 23 C 0.06 1.64 6.71 38.09 0.26 1.89 16 24 N -0.31 -8.73 3.86 -190.85 -0.74 -9.47 16 25 C 0.23 5.23 12.15 180.19 2.19 7.42 16 26 N -0.35 -10.06 12.16 -60.14 -0.73 -10.79 16 27 N -0.07 -2.35 13.39 37.02 0.50 -1.86 16 28 N -0.08 -2.43 12.08 37.02 0.45 -1.99 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.21 7.64 -2.39 -0.02 1.20 16 31 H 0.07 1.23 7.66 -2.38 -0.02 1.22 16 32 H 0.16 4.19 6.27 -2.91 -0.02 4.17 16 33 H 0.19 7.59 3.00 -2.91 -0.01 7.58 16 34 H 0.02 1.05 6.49 -2.39 -0.02 1.03 16 35 H 0.06 2.52 4.07 -2.43 -0.01 2.51 16 36 H 0.27 12.11 8.31 -92.71 -0.77 11.33 16 37 H 0.09 2.84 6.92 -2.38 -0.02 2.82 16 38 H 0.05 1.62 6.73 -2.39 -0.02 1.60 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.30 7.82 -2.39 -0.02 1.28 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.30 6.48 -2.39 -0.02 2.29 16 44 H 0.17 3.71 6.73 -2.91 -0.02 3.69 16 45 H 0.28 3.24 7.19 -2.91 -0.02 3.22 16 Total: -1.00 -58.68 366.92 7.20 -51.48 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 1.06 Total: 23.39 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 7.17 Total: 9.05 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -2.21 Total: -89.84 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.85 Total: -32.78 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -58.68 7.20 -51.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542885336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.661 kcal (2) G-P(sol) polarization free energy of solvation -58.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds