Wall clock time and date at job start Wed Apr 1 2020 04:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 N 1.46501 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.34820 * 126.59566 * 124.71135 * 4 3 2 6 6 C 1.36621 * 106.83353 * 180.25964 * 5 4 3 7 7 C 1.47487 * 125.77108 * 180.02562 * 6 5 4 8 8 O 1.21609 * 119.99987 * 359.94873 * 7 6 5 9 9 N 1.34768 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.39505 * 119.99908 * 179.97438 * 9 7 6 11 11 N 1.32284 * 119.73095 * 0.02562 * 10 9 7 12 12 C 1.31963 * 121.69074 * 179.97438 * 11 10 9 13 13 C 1.38076 * 120.95326 * 0.02562 * 12 11 10 14 14 C 1.38791 * 119.36383 * 359.97438 * 13 12 11 15 15 C 1.38790 * 118.44162 * 359.74449 * 14 13 12 16 16 O 1.35985 * 120.49233 * 180.26848 * 15 14 13 17 17 C 1.42897 * 117.00254 * 0.25164 * 16 15 14 18 18 C 1.52998 * 109.46967 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47085 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99673 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00329 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00648 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99987 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46661 * 89.99778 * 23 21 19 25 25 H 1.48497 * 109.47310 * 210.00249 * 23 21 19 26 26 H 1.48501 * 109.46829 * 330.00402 * 23 21 19 27 27 N 1.34403 * 108.45440 * 0.02562 * 6 5 4 28 28 N 1.28758 * 109.52893 * 359.97438 * 27 6 5 29 29 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46824 * 300.00133 * 1 2 3 31 31 H 1.09004 * 109.47844 * 59.99561 * 1 2 3 32 32 H 1.08999 * 109.46979 * 240.00103 * 2 1 3 33 33 H 1.08998 * 109.47173 * 119.99878 * 2 1 3 34 34 H 1.08999 * 109.47107 * 60.00182 * 3 2 1 35 35 H 1.09008 * 109.46952 * 300.00142 * 3 2 1 36 36 H 1.07997 * 126.57983 * 0.26627 * 5 4 3 37 37 H 0.97002 * 120.00652 * 359.97438 * 9 7 6 38 38 H 1.07994 * 119.52065 * 179.97438 * 12 11 10 39 39 H 1.08000 * 120.32296 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.78091 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47131 * 300.00059 * 17 16 15 42 42 H 1.09002 * 109.46627 * 60.00240 * 17 16 15 43 43 H 1.09003 * 109.47160 * 299.99756 * 18 17 16 44 44 H 1.08994 * 109.47339 * 60.00380 * 18 17 16 45 45 H 0.96997 * 120.00581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0590 -0.8906 6 6 5.5942 1.7911 -0.5149 7 6 6.8099 2.2651 -1.2024 8 8 6.7148 2.9583 -2.1971 9 7 8.0262 1.9297 -0.7286 10 6 9.1760 2.3777 -1.3792 11 7 9.0663 3.1319 -2.4605 12 6 10.1278 3.5771 -3.1057 13 6 11.4026 3.2697 -2.6733 14 6 11.5660 2.4811 -1.5429 15 6 10.4320 2.0317 -0.8808 16 8 10.5438 1.2611 0.2340 17 6 11.8661 0.9516 0.6789 18 6 11.7909 0.0835 1.9365 19 6 13.1853 -0.2434 2.4054 20 1 14.0397 0.1310 1.8610 21 6 13.3704 -1.0204 3.5291 22 7 14.5872 -1.3053 3.9387 23 14 11.8926 -1.6674 4.4711 24 1 11.4981 -2.9907 3.9247 25 1 12.2442 -1.8095 5.9069 26 1 10.7608 -0.7164 4.3303 27 7 5.5640 1.0224 0.5872 28 7 4.3412 0.7960 0.9207 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9954 2.6511 -1.7379 37 1 8.1022 1.3769 0.0648 38 1 9.9976 4.1902 -3.9852 39 1 12.2642 3.6399 -3.2089 40 1 12.5525 2.2269 -1.1843 41 1 12.3960 0.4109 -0.1051 42 1 12.3982 1.8753 0.9068 43 1 11.2611 0.6247 2.7205 44 1 11.2586 -0.8401 1.7092 45 1 14.7174 -1.8516 4.7295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611228484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:41 Heat of formation + Delta-G solvation = 65.047388 kcal Electronic energy + Delta-G solvation = -28684.430214 eV Core-core repulsion = 24512.175235 eV Total energy + Delta-G solvation = -4172.254979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.49072 -40.83391 -39.08314 -37.79709 -36.44430 -34.89237 -33.39096 -33.05700 -31.77297 -31.26908 -30.72049 -29.21491 -27.52037 -25.61565 -24.62629 -23.37224 -22.93684 -22.48569 -21.92548 -20.75787 -20.22220 -18.72957 -18.03175 -17.51933 -16.76478 -16.56234 -16.49103 -15.89727 -15.76242 -15.50629 -15.18767 -14.87062 -14.80179 -14.35633 -14.18069 -14.08031 -13.95713 -13.52429 -13.20108 -13.05818 -12.68562 -12.53482 -12.46225 -12.15764 -12.08471 -12.02873 -11.63668 -11.36564 -11.18800 -10.92985 -10.76982 -10.66327 -10.52463 -10.25960 -10.09767 -9.86492 -9.55735 -9.39044 -9.23136 -9.14665 -8.63690 -7.69308 -6.14995 -4.16518 0.80881 1.12520 1.42713 1.66524 1.67021 2.81944 3.18264 3.29219 3.36601 3.42531 3.47833 3.79233 3.91323 4.00807 4.12838 4.28668 4.38464 4.45513 4.56053 4.63246 4.72204 4.76719 4.93993 4.94585 5.05081 5.09228 5.19233 5.21787 5.37418 5.40863 5.45154 5.55207 5.60034 5.80849 5.84635 6.01994 6.04070 6.17099 6.31186 6.41246 6.56651 7.00860 7.19229 7.19553 7.54469 7.64447 7.71919 7.99996 8.28013 8.36021 8.85001 9.45092 10.97264 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008134 B = 0.002750 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.374502 B =10178.250134 C =13504.666446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.362 5.362 5 C 0.095 3.905 6 C -0.101 4.101 7 C 0.599 3.401 8 O -0.479 6.479 9 N -0.637 5.637 10 C 0.329 3.671 11 N -0.444 5.444 12 C 0.076 3.924 13 C -0.158 4.158 14 C -0.146 4.146 15 C 0.070 3.930 16 O -0.317 6.317 17 C 0.073 3.927 18 C -0.009 4.009 19 C -0.528 4.528 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.879 3.121 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.261 1.261 27 N -0.200 5.200 28 N -0.058 5.058 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.206 0.794 37 H 0.431 0.569 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.025 0.975 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.562 8.189 -12.903 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.147 5.147 5 C -0.061 4.061 6 C -0.241 4.241 7 C 0.383 3.617 8 O -0.349 6.349 9 N -0.284 5.284 10 C 0.096 3.904 11 N -0.159 5.159 12 C -0.081 4.081 13 C -0.179 4.179 14 C -0.173 4.173 15 C 0.019 3.981 16 O -0.230 6.230 17 C 0.000 4.000 18 C -0.046 4.046 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.706 3.294 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.186 1.186 27 N -0.074 5.074 28 N -0.039 5.039 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.223 0.777 37 H 0.270 0.730 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.570 7.832 -12.362 30.334 hybrid contribution 0.390 -0.263 0.369 0.598 sum -26.180 7.569 -11.993 29.774 Atomic orbital electron populations 1.21705 0.93784 1.02957 1.02333 1.21845 0.97013 0.94497 1.04394 1.22184 0.72394 1.00204 1.05234 1.50616 1.08915 1.35202 1.19944 1.23355 0.89975 0.96981 0.95839 1.21390 0.94332 1.08871 0.99462 1.16818 0.81275 0.80151 0.83489 1.90901 1.85723 1.34957 1.23277 1.43147 1.03048 1.51525 1.30730 1.17724 0.83357 0.96934 0.92385 1.67609 1.33342 1.09582 1.05393 1.22414 0.87141 0.99203 0.99334 1.21912 0.98932 0.99750 0.97282 1.21641 0.98482 1.00162 0.96992 1.19546 0.92878 0.95607 0.90094 1.86089 1.34036 1.64238 1.38620 1.23148 0.79124 0.99511 0.98265 1.19594 0.98896 0.94769 0.91369 1.20809 0.90640 1.33160 1.11953 0.90744 1.24928 0.95897 0.95356 0.96786 1.69887 1.20674 1.37989 1.24933 0.86772 0.83480 0.79994 0.79137 1.20024 1.21200 1.18584 1.74726 1.12987 1.09821 1.09906 1.82023 0.93259 1.16967 1.11646 0.91570 0.92050 0.92225 0.90963 0.89891 0.88209 0.87638 0.77737 0.72980 0.82496 0.84649 0.83510 0.92311 0.92290 0.95258 0.95694 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 9.91 37.16 0.37 -0.03 16 2 C -0.14 -0.61 6.14 -26.73 -0.16 -0.78 16 3 C 0.12 0.50 6.54 -4.04 -0.03 0.47 16 4 N -0.36 -3.09 3.69 -61.05 -0.23 -3.32 16 5 C 0.10 0.87 11.27 -16.82 -0.19 0.68 16 6 C -0.10 -1.30 6.99 -83.56 -0.58 -1.88 16 7 C 0.60 9.02 7.78 -12.50 -0.10 8.93 16 8 O -0.48 -8.01 15.11 5.27 0.08 -7.93 16 9 N -0.64 -10.07 5.39 -12.25 -0.07 -10.14 16 10 C 0.33 5.50 7.44 -154.49 -1.15 4.34 16 11 N -0.44 -7.25 7.87 -12.24 -0.10 -7.35 16 12 C 0.08 0.99 11.17 -17.55 -0.20 0.80 16 13 C -0.16 -1.92 10.10 -39.44 -0.40 -2.31 16 14 C -0.15 -2.10 9.14 -39.17 -0.36 -2.46 16 15 C 0.07 1.17 6.72 -38.91 -0.26 0.91 16 16 O -0.32 -5.84 9.38 -19.69 -0.18 -6.03 16 17 C 0.07 1.44 4.70 37.16 0.17 1.61 16 18 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 19 C -0.53 -14.57 9.66 -34.44 -0.33 -14.91 16 20 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 22 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 23 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 27 N -0.20 -2.82 12.04 32.84 0.40 -2.43 16 28 N -0.06 -0.73 13.65 60.35 0.82 0.10 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.14 8.14 -51.92 -0.42 -0.28 16 31 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.11 0.14 8.08 -51.92 -0.42 -0.28 16 36 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.43 6.65 7.73 -40.82 -0.32 6.33 16 38 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.97 6.44 -52.49 -0.34 1.63 16 41 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 42 H 0.06 1.10 7.71 -51.93 -0.40 0.70 16 43 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 44 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -35.19 388.50 -6.78 -41.97 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.03 Total: 1.70 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.44 Total: -2.99 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 1.60 Total: -49.38 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.11 Total: -13.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.19 -6.78 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611228484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.020 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds