Wall clock time and date at job start Wed Apr 1 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 N 1.46501 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.34820 * 126.59566 * 124.71135 * 4 3 2 6 6 C 1.36621 * 106.83353 * 180.25964 * 5 4 3 7 7 C 1.47487 * 125.77108 * 180.02562 * 6 5 4 8 8 O 1.21609 * 119.99987 * 359.94873 * 7 6 5 9 9 N 1.34768 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.39505 * 119.99908 * 179.97438 * 9 7 6 11 11 N 1.32284 * 119.73095 * 0.02562 * 10 9 7 12 12 C 1.31963 * 121.69074 * 179.97438 * 11 10 9 13 13 C 1.38076 * 120.95326 * 0.02562 * 12 11 10 14 14 C 1.38791 * 119.36383 * 359.97438 * 13 12 11 15 15 C 1.38790 * 118.44162 * 359.74449 * 14 13 12 16 16 O 1.35985 * 120.49233 * 180.26848 * 15 14 13 17 17 C 1.42897 * 117.00254 * 0.25164 * 16 15 14 18 18 C 1.52998 * 109.46967 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47085 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99673 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00329 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00648 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99987 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46661 * 89.99778 * 23 21 19 25 25 H 1.48497 * 109.47310 * 210.00249 * 23 21 19 26 26 H 1.48501 * 109.46829 * 330.00402 * 23 21 19 27 27 N 1.34403 * 108.45440 * 0.02562 * 6 5 4 28 28 N 1.28758 * 109.52893 * 359.97438 * 27 6 5 29 29 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46824 * 300.00133 * 1 2 3 31 31 H 1.09004 * 109.47844 * 59.99561 * 1 2 3 32 32 H 1.08999 * 109.46979 * 240.00103 * 2 1 3 33 33 H 1.08998 * 109.47173 * 119.99878 * 2 1 3 34 34 H 1.08999 * 109.47107 * 60.00182 * 3 2 1 35 35 H 1.09008 * 109.46952 * 300.00142 * 3 2 1 36 36 H 1.07997 * 126.57983 * 0.26627 * 5 4 3 37 37 H 0.97002 * 120.00652 * 359.97438 * 9 7 6 38 38 H 1.07994 * 119.52065 * 179.97438 * 12 11 10 39 39 H 1.08000 * 120.32296 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.78091 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47131 * 300.00059 * 17 16 15 42 42 H 1.09002 * 109.46627 * 60.00240 * 17 16 15 43 43 H 1.09003 * 109.47160 * 299.99756 * 18 17 16 44 44 H 1.08994 * 109.47339 * 60.00380 * 18 17 16 45 45 H 0.96997 * 120.00581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0590 -0.8906 6 6 5.5942 1.7911 -0.5149 7 6 6.8099 2.2651 -1.2024 8 8 6.7148 2.9583 -2.1971 9 7 8.0262 1.9297 -0.7286 10 6 9.1760 2.3777 -1.3792 11 7 9.0663 3.1319 -2.4605 12 6 10.1278 3.5771 -3.1057 13 6 11.4026 3.2697 -2.6733 14 6 11.5660 2.4811 -1.5429 15 6 10.4320 2.0317 -0.8808 16 8 10.5438 1.2611 0.2340 17 6 11.8661 0.9516 0.6789 18 6 11.7909 0.0835 1.9365 19 6 13.1853 -0.2434 2.4054 20 1 14.0397 0.1310 1.8610 21 6 13.3704 -1.0204 3.5291 22 7 14.5872 -1.3053 3.9387 23 14 11.8926 -1.6674 4.4711 24 1 11.4981 -2.9907 3.9247 25 1 12.2442 -1.8095 5.9069 26 1 10.7608 -0.7164 4.3303 27 7 5.5640 1.0224 0.5872 28 7 4.3412 0.7960 0.9207 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9954 2.6511 -1.7379 37 1 8.1022 1.3769 0.0648 38 1 9.9976 4.1902 -3.9852 39 1 12.2642 3.6399 -3.2089 40 1 12.5525 2.2269 -1.1843 41 1 12.3960 0.4109 -0.1051 42 1 12.3982 1.8753 0.9068 43 1 11.2611 0.6247 2.7205 44 1 11.2586 -0.8401 1.7092 45 1 14.7174 -1.8516 4.7295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611228484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:40 Heat of formation + Delta-G solvation = 41.011220 kcal Electronic energy + Delta-G solvation = -28685.472500 eV Core-core repulsion = 24512.175235 eV Total energy + Delta-G solvation = -4173.297265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.32217 -41.99072 -40.26130 -39.08079 -36.95749 -36.03875 -35.40553 -33.64192 -33.08203 -32.65202 -31.94038 -30.38936 -28.01138 -27.31046 -25.72533 -24.36870 -23.94347 -23.45110 -22.59317 -22.32285 -21.26025 -19.84843 -19.36779 -18.75046 -18.22048 -17.67114 -17.35721 -17.11754 -16.84940 -16.33150 -16.23975 -16.08835 -15.81876 -15.68955 -15.33164 -15.23378 -14.83184 -14.74673 -14.41736 -14.12308 -13.79259 -13.66213 -13.35024 -13.22802 -12.98277 -12.85086 -12.72536 -12.53840 -12.26554 -12.19440 -11.91386 -11.83945 -11.76745 -11.65745 -11.61470 -11.46265 -11.31977 -10.81033 -10.47342 -10.36030 -10.28693 -8.87883 -8.34378 -6.40374 -0.08180 0.17933 0.28688 0.66699 1.05265 1.36117 1.38188 1.50281 1.76331 2.10789 2.13805 2.33149 2.88946 2.99929 3.01112 3.25864 3.51816 3.70566 3.81609 3.84852 3.87698 3.99960 4.12418 4.13716 4.21254 4.24240 4.29406 4.44786 4.46936 4.49889 4.67217 4.68227 4.80099 4.95685 5.06464 5.10596 5.14590 5.16590 5.22995 5.30871 5.31703 5.47249 5.48862 5.58393 6.07512 6.16298 6.27694 6.65613 6.73892 6.93621 7.15896 7.24820 8.80946 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008134 B = 0.002750 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.374502 B =10178.250134 C =13504.666446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.110 3.890 4 N -0.347 5.347 5 C 0.120 3.880 6 C -0.129 4.129 7 C 0.600 3.400 8 O -0.501 6.501 9 N -0.643 5.643 10 C 0.311 3.689 11 N -0.468 5.468 12 C 0.078 3.922 13 C -0.143 4.143 14 C -0.148 4.148 15 C 0.042 3.958 16 O -0.328 6.328 17 C 0.087 3.913 18 C -0.007 4.007 19 C -0.533 4.533 20 H 0.046 0.954 21 C 0.015 3.985 22 N -0.941 5.941 23 Si 0.943 3.057 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.251 1.251 27 N -0.232 5.232 28 N -0.085 5.085 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.245 0.755 37 H 0.429 0.571 38 H 0.192 0.808 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.977 9.512 -14.569 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.131 5.131 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.385 3.615 8 O -0.372 6.372 9 N -0.290 5.290 10 C 0.080 3.920 11 N -0.184 5.184 12 C -0.078 4.078 13 C -0.163 4.163 14 C -0.174 4.174 15 C -0.008 4.008 16 O -0.242 6.242 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.571 4.571 20 H 0.065 0.935 21 C -0.183 4.183 22 N -0.581 5.581 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.174 1.174 27 N -0.105 5.105 28 N -0.066 5.066 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.261 0.739 37 H 0.267 0.733 38 H 0.209 0.791 39 H 0.194 0.806 40 H 0.172 0.828 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.023 9.147 -14.019 33.504 hybrid contribution 1.115 -0.572 0.726 1.448 sum -27.908 8.575 -13.293 32.080 Atomic orbital electron populations 1.21677 0.92165 1.03050 1.03395 1.21794 0.98287 0.94466 1.02911 1.22700 0.69682 1.00498 1.07926 1.50927 1.10229 1.33464 1.18521 1.23886 0.88572 0.95547 0.95828 1.21339 0.94876 1.10498 1.00147 1.17081 0.81565 0.79583 0.83230 1.90861 1.86078 1.36088 1.24207 1.43256 1.03446 1.51575 1.30694 1.17902 0.83581 0.97597 0.92933 1.67671 1.34940 1.10155 1.05626 1.23115 0.86881 0.98273 0.99576 1.22311 1.00031 0.97938 0.96064 1.21907 0.98062 1.00009 0.97470 1.19716 0.93862 0.96952 0.90311 1.86010 1.32800 1.65384 1.39979 1.22761 0.80056 0.99130 0.96834 1.19449 0.96245 0.95595 0.93205 1.21097 0.91864 1.32493 1.11613 0.93548 1.25815 0.98690 0.95817 0.97981 1.70013 1.22914 1.39298 1.25859 0.85760 0.80078 0.79727 0.77778 1.19147 1.20646 1.17449 1.74694 1.14095 1.10850 1.10891 1.81929 0.93298 1.18240 1.13124 0.92033 0.91436 0.90673 0.91784 0.92134 0.86752 0.83702 0.73931 0.73293 0.79084 0.80627 0.82778 0.91729 0.91760 0.95453 0.95566 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 71.98 0.71 0.24 16 2 C -0.14 -1.01 6.14 30.59 0.19 -0.82 16 3 C 0.11 0.61 6.54 86.38 0.56 1.18 16 4 N -0.35 -5.35 3.69 -347.06 -1.28 -6.63 16 5 C 0.12 1.95 11.27 83.86 0.95 2.89 16 6 C -0.13 -3.28 6.99 40.81 0.29 -3.00 16 7 C 0.60 18.26 7.78 86.68 0.67 18.93 16 8 O -0.50 -16.57 15.11 -4.06 -0.06 -16.63 16 9 N -0.64 -20.89 5.39 -310.93 -1.67 -22.57 16 10 C 0.31 10.44 7.44 133.01 0.99 11.43 16 11 N -0.47 -14.84 7.87 -192.63 -1.52 -16.36 16 12 C 0.08 1.85 11.17 84.63 0.95 2.80 16 13 C -0.14 -3.04 10.10 22.36 0.23 -2.82 16 14 C -0.15 -4.05 9.14 22.53 0.21 -3.84 16 15 C 0.04 1.40 6.72 22.70 0.15 1.55 16 16 O -0.33 -12.22 9.38 -93.38 -0.88 -13.10 16 17 C 0.09 3.39 4.70 71.98 0.34 3.73 16 18 C -0.01 -0.35 4.41 29.85 0.13 -0.22 16 19 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 20 H 0.05 2.79 7.99 -2.91 -0.02 2.77 16 21 C 0.02 0.88 5.47 84.65 0.46 1.34 16 22 N -0.94 -57.85 13.96 21.44 0.30 -57.55 16 23 Si 0.94 44.48 27.47 68.60 1.88 46.36 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 27 N -0.23 -6.68 12.04 -50.01 -0.60 -7.28 16 28 N -0.09 -2.12 13.65 37.02 0.51 -1.62 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.15 -0.27 8.08 -2.38 -0.02 -0.29 16 36 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.43 13.91 7.73 -92.71 -0.72 13.19 16 38 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.15 3.92 6.44 -2.91 -0.02 3.90 16 41 H 0.06 2.42 7.69 -2.39 -0.02 2.40 16 42 H 0.06 2.41 7.71 -2.39 -0.02 2.39 16 43 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 44 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -79.30 388.50 4.01 -75.30 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.26 Total: 16.40 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 7.07 Total: 3.67 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.27 Total: -112.00 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.94 Total: -29.73 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -79.30 4.01 -75.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611228484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.308 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds