Wall clock time and date at job start Wed Apr 1 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47135 * 2 1 4 4 C 1.52996 * 109.47294 * 120.00571 * 2 1 3 5 5 N 1.46505 * 109.47269 * 175.07413 * 4 2 1 6 6 C 1.46501 * 119.99746 * 274.66303 * 5 4 2 7 7 C 1.50697 * 109.47017 * 264.28708 * 6 5 4 8 8 H 1.08002 * 119.99850 * 354.51337 * 7 6 5 9 9 C 1.37878 * 119.99708 * 174.51779 * 7 6 5 10 10 N 1.31511 * 120.00094 * 4.68762 * 9 7 6 11 11 Si 1.86799 * 119.99577 * 184.68348 * 9 7 6 12 12 H 1.48501 * 109.46997 * 90.00118 * 11 9 7 13 13 H 1.48499 * 109.47339 * 210.00094 * 11 9 7 14 14 H 1.48495 * 109.47410 * 330.00322 * 11 9 7 15 15 C 1.34776 * 120.00067 * 94.65685 * 5 4 2 16 16 O 1.21567 * 119.99825 * 2.27130 * 15 5 4 17 17 C 1.47713 * 120.00176 * 182.26306 * 15 5 4 18 18 C 1.37932 * 120.63221 * 234.72098 * 17 15 5 19 19 C 1.40047 * 119.03528 * 180.02562 * 18 17 15 20 20 N 1.31327 * 120.25056 * 0.02562 * 19 18 17 21 21 C 1.33287 * 121.33377 * 0.02562 * 20 19 18 22 22 C 1.40867 * 132.34697 * 179.97438 * 21 20 19 23 23 C 1.46769 * 126.50575 * 0.05626 * 22 21 20 24 24 N 1.34781 * 120.00145 * 180.02562 * 23 22 21 25 25 O 1.21684 * 120.00315 * 359.97438 * 23 22 21 26 26 C 1.40407 * 106.98499 * 180.02562 * 22 21 20 27 27 N 1.30864 * 108.75234 * 0.02562 * 26 22 21 28 28 N 1.36618 * 120.97949 * 359.97438 * 21 20 19 29 29 H 1.09004 * 109.46728 * 304.90112 * 1 2 3 30 30 H 1.08993 * 109.47646 * 64.89631 * 1 2 3 31 31 H 1.08999 * 109.47325 * 184.90555 * 1 2 3 32 32 H 1.09003 * 109.46434 * 240.00146 * 2 1 3 33 33 H 1.08993 * 109.47573 * 65.42557 * 3 2 1 34 34 H 1.09007 * 109.47094 * 185.42590 * 3 2 1 35 35 H 1.08999 * 109.47664 * 305.42451 * 3 2 1 36 36 H 1.09001 * 109.47630 * 55.06970 * 4 2 1 37 37 H 1.09002 * 109.46834 * 295.07094 * 4 2 1 38 38 H 1.08994 * 109.47010 * 24.29089 * 6 5 4 39 39 H 1.08998 * 109.46712 * 144.28914 * 6 5 4 40 40 H 0.97006 * 119.99517 * 179.97438 * 10 9 7 41 41 H 1.08000 * 120.48308 * 0.29955 * 18 17 15 42 42 H 1.08008 * 119.87462 * 179.97438 * 19 18 17 43 43 H 0.96997 * 119.99770 * 359.97438 * 24 23 22 44 44 H 0.96996 * 119.99828 * 179.97438 * 24 23 22 45 45 H 1.08006 * 125.62480 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5003 -0.8249 1.1913 6 6 4.1278 -1.9368 0.4729 7 6 4.4631 -3.0379 1.4456 8 1 4.3139 -2.8868 2.5046 9 6 4.9604 -4.2380 0.9837 10 7 5.2290 -4.3901 -0.2947 11 14 5.2527 -5.6478 2.1738 12 1 4.0249 -6.4776 2.2692 13 1 6.3782 -6.4837 1.6841 14 1 5.5873 -5.1030 3.5140 15 6 4.2662 0.1028 1.7988 16 8 3.7459 1.0024 2.4296 17 6 5.7380 0.0264 1.6985 18 6 6.5199 0.0097 2.8346 19 6 7.9121 -0.0628 2.7005 20 7 8.4602 -0.1134 1.5082 21 6 7.7165 -0.0970 0.4022 22 6 8.0495 -0.1396 -0.9659 23 6 9.4005 -0.2193 -1.5336 24 7 9.5689 -0.2524 -2.8705 25 8 10.3688 -0.2547 -0.7975 26 6 6.8434 -0.0919 -1.6832 27 7 5.8507 -0.0251 -0.8332 28 7 6.3539 -0.0272 0.4720 29 1 -0.3633 0.5880 0.8429 30 1 -0.3634 0.4359 -0.9305 31 1 -0.3634 -1.0239 0.0879 32 1 1.8932 -0.5138 -0.8901 33 1 1.7582 1.9275 0.9345 34 1 3.1257 1.4439 -0.0972 35 1 1.5995 1.9836 -0.8374 36 1 1.6064 -1.7204 1.2944 37 1 1.7506 -0.1591 2.1370 38 1 3.4394 -2.3162 -0.2822 39 1 5.0407 -1.5882 -0.0101 40 1 5.5792 -5.2344 -0.6195 41 1 6.0651 0.0474 3.8134 42 1 8.5374 -0.0764 3.5811 43 1 8.7972 -0.2239 -3.4573 44 1 10.4619 -0.3048 -3.2456 45 1 6.7503 -0.1070 -2.7591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767335226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:41 Heat of formation + Delta-G solvation = 49.484758 kcal Electronic energy + Delta-G solvation = -31697.213588 eV Core-core repulsion = 27524.283764 eV Total energy + Delta-G solvation = -4172.929825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.28872 -39.60601 -38.67751 -37.69073 -36.18439 -34.48900 -33.54613 -33.25629 -32.43434 -30.93356 -29.20992 -27.70778 -26.93869 -26.64567 -24.67003 -23.90889 -23.16012 -22.47802 -21.05118 -19.79002 -18.97241 -18.07659 -17.57539 -16.93687 -16.88021 -16.56087 -16.22773 -15.79934 -15.60305 -15.04977 -14.70329 -14.52517 -14.27742 -14.02019 -13.80146 -13.59174 -13.39789 -13.13328 -12.77268 -12.64194 -12.42727 -12.32808 -12.00941 -11.67253 -11.58731 -11.29646 -11.14066 -11.00113 -10.83404 -10.73619 -10.63397 -10.46270 -10.19666 -10.06027 -9.85344 -9.61459 -9.42638 -9.41684 -9.38606 -8.66301 -7.95540 -7.75088 -6.29141 -4.36920 0.41793 0.96563 1.93968 2.34877 2.95454 3.15113 3.22516 3.23768 3.28633 3.45464 3.79895 3.91426 4.02127 4.21439 4.36645 4.58742 4.95273 5.03743 5.05700 5.14296 5.19945 5.20577 5.29172 5.37980 5.56292 5.69469 5.77901 5.86353 5.92600 6.03574 6.08802 6.14636 6.22338 6.29957 6.34918 6.48888 6.53504 6.61557 6.68384 7.03594 7.18957 7.25626 7.48304 7.62587 7.62869 7.78843 7.91681 7.96164 8.40627 8.65250 8.70221 9.30015 10.77249 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.005348 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.175732 B = 5234.302241 C = 6591.170012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.136 4.136 4 C 0.121 3.879 5 N -0.560 5.560 6 C 0.218 3.782 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.881 5.881 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.561 3.439 16 O -0.544 6.544 17 C 0.196 3.804 18 C -0.180 4.180 19 C 0.190 3.810 20 N -0.445 5.445 21 C 0.332 3.668 22 C -0.302 4.302 23 C 0.605 3.395 24 N -0.858 5.858 25 O -0.540 6.540 26 C 0.123 3.877 27 N -0.282 5.282 28 N -0.281 5.281 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.266 0.734 41 H 0.173 0.827 42 H 0.188 0.812 43 H 0.397 0.603 44 H 0.401 0.599 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 8.636 -2.373 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.194 4.194 4 C -0.002 4.002 5 N -0.287 5.287 6 C 0.099 3.901 7 C -0.588 4.588 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.518 5.518 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.345 3.655 16 O -0.423 6.423 17 C 0.075 3.925 18 C -0.205 4.205 19 C 0.009 3.991 20 N -0.156 5.156 21 C 0.099 3.901 22 C -0.319 4.319 23 C 0.392 3.608 24 N -0.422 5.422 25 O -0.417 6.417 26 C -0.058 4.058 27 N -0.103 5.103 28 N -0.050 5.050 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.190 0.810 42 H 0.205 0.795 43 H 0.225 0.775 44 H 0.231 0.769 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.939 8.931 -1.871 9.173 hybrid contribution 0.113 -1.311 0.031 1.316 sum -0.826 7.621 -1.840 7.883 Atomic orbital electron populations 1.21750 0.94981 1.01684 1.01494 1.21475 0.95388 0.96948 0.99188 1.21745 1.01196 0.95440 1.00995 1.21567 0.79473 1.01110 0.98050 1.48189 1.06099 1.25024 1.49416 1.19987 0.95333 0.82601 0.92206 1.21469 1.44970 0.98744 0.93637 0.92221 1.24912 0.94738 0.98511 0.95340 1.69925 1.42762 1.25806 1.13345 0.86543 0.78080 0.82071 0.81164 1.20287 1.20937 1.19692 1.17394 0.84026 0.83181 0.80921 1.90786 1.72626 1.35411 1.43495 1.20982 0.95107 0.94409 0.81965 1.22223 0.94653 1.05247 0.98362 1.23522 0.92174 0.88033 0.95399 1.68003 1.36283 1.14562 0.96787 1.20312 0.79479 0.95897 0.94430 1.19096 0.94504 1.29425 0.88878 1.16795 0.87091 0.74971 0.81900 1.43538 1.12007 1.79735 1.06906 1.90843 1.41156 1.50320 1.59392 1.23981 0.88804 0.93069 0.99993 1.77704 1.20524 1.28794 0.83276 1.46982 1.07081 1.44971 1.05974 0.92775 0.92777 0.92577 0.90744 0.92561 0.92905 0.93618 0.90056 0.90286 0.93998 0.92129 0.92415 0.80997 0.79549 0.77520 0.76858 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 2 C -0.11 -1.68 3.13 -90.63 -0.28 -1.96 16 3 C -0.14 -2.11 8.04 37.15 0.30 -1.81 16 4 C 0.12 2.09 4.94 -4.04 -0.02 2.07 16 5 N -0.56 -11.32 2.29 -176.23 -0.40 -11.73 16 6 C 0.22 5.11 4.83 -5.19 -0.03 5.08 16 7 C -0.55 -14.10 9.26 -34.44 -0.32 -14.42 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 10 N -0.88 -24.21 13.29 55.43 0.74 -23.47 16 11 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.56 11.24 5.86 -12.39 -0.07 11.17 16 16 O -0.54 -11.13 15.58 5.31 0.08 -11.04 16 17 C 0.20 3.79 5.66 -81.64 -0.46 3.33 16 18 C -0.18 -2.84 9.84 -39.02 -0.38 -3.23 16 19 C 0.19 2.81 11.27 -17.09 -0.19 2.62 16 20 N -0.45 -8.38 10.21 -12.01 -0.12 -8.50 16 21 C 0.33 6.61 7.74 -155.87 -1.21 5.41 16 22 C -0.30 -5.43 6.17 -104.64 -0.65 -6.08 16 23 C 0.61 10.29 8.06 -12.81 -0.10 10.19 16 24 N -0.86 -9.60 8.86 30.28 0.27 -9.33 16 25 O -0.54 -11.28 17.57 5.20 0.09 -11.19 16 26 C 0.12 1.96 11.44 -17.15 -0.20 1.76 16 27 N -0.28 -5.36 10.02 30.74 0.31 -5.05 16 28 N -0.28 -5.59 2.98 -8.43 -0.03 -5.61 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.88 7.98 -51.93 -0.41 0.47 16 34 H 0.05 0.94 6.92 -51.92 -0.36 0.58 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.08 1.34 7.26 -51.93 -0.38 0.97 16 38 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 39 H 0.06 1.48 3.67 -51.93 -0.19 1.29 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.19 1.79 8.06 -52.48 -0.42 1.36 16 43 H 0.40 3.18 7.75 -40.82 -0.32 2.86 16 44 H 0.40 3.77 8.93 -40.82 -0.36 3.40 16 45 H 0.20 2.06 7.46 -52.48 -0.39 1.67 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -35.14 381.61 -7.46 -42.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.76 Total: 7.53 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -3.37 Total: 14.49 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: 0.76 Total: -63.69 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.17 Total: -22.23 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.14 -7.46 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767335226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.082 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds