Wall clock time and date at job start Wed Apr 1 2020 03:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47135 * 2 1 4 4 C 1.52996 * 109.47294 * 120.00571 * 2 1 3 5 5 N 1.46505 * 109.47269 * 175.07413 * 4 2 1 6 6 C 1.46501 * 119.99746 * 274.66303 * 5 4 2 7 7 C 1.50697 * 109.47017 * 264.28708 * 6 5 4 8 8 H 1.08002 * 119.99850 * 354.51337 * 7 6 5 9 9 C 1.37878 * 119.99708 * 174.51779 * 7 6 5 10 10 N 1.31511 * 120.00094 * 4.68762 * 9 7 6 11 11 Si 1.86799 * 119.99577 * 184.68348 * 9 7 6 12 12 H 1.48501 * 109.46997 * 90.00118 * 11 9 7 13 13 H 1.48499 * 109.47339 * 210.00094 * 11 9 7 14 14 H 1.48495 * 109.47410 * 330.00322 * 11 9 7 15 15 C 1.34776 * 120.00067 * 94.65685 * 5 4 2 16 16 O 1.21567 * 119.99825 * 2.27130 * 15 5 4 17 17 C 1.47713 * 120.00176 * 182.26306 * 15 5 4 18 18 C 1.37932 * 120.63221 * 234.72098 * 17 15 5 19 19 C 1.40047 * 119.03528 * 180.02562 * 18 17 15 20 20 N 1.31327 * 120.25056 * 0.02562 * 19 18 17 21 21 C 1.33287 * 121.33377 * 0.02562 * 20 19 18 22 22 C 1.40867 * 132.34697 * 179.97438 * 21 20 19 23 23 C 1.46769 * 126.50575 * 0.05626 * 22 21 20 24 24 N 1.34781 * 120.00145 * 180.02562 * 23 22 21 25 25 O 1.21684 * 120.00315 * 359.97438 * 23 22 21 26 26 C 1.40407 * 106.98499 * 180.02562 * 22 21 20 27 27 N 1.30864 * 108.75234 * 0.02562 * 26 22 21 28 28 N 1.36618 * 120.97949 * 359.97438 * 21 20 19 29 29 H 1.09004 * 109.46728 * 304.90112 * 1 2 3 30 30 H 1.08993 * 109.47646 * 64.89631 * 1 2 3 31 31 H 1.08999 * 109.47325 * 184.90555 * 1 2 3 32 32 H 1.09003 * 109.46434 * 240.00146 * 2 1 3 33 33 H 1.08993 * 109.47573 * 65.42557 * 3 2 1 34 34 H 1.09007 * 109.47094 * 185.42590 * 3 2 1 35 35 H 1.08999 * 109.47664 * 305.42451 * 3 2 1 36 36 H 1.09001 * 109.47630 * 55.06970 * 4 2 1 37 37 H 1.09002 * 109.46834 * 295.07094 * 4 2 1 38 38 H 1.08994 * 109.47010 * 24.29089 * 6 5 4 39 39 H 1.08998 * 109.46712 * 144.28914 * 6 5 4 40 40 H 0.97006 * 119.99517 * 179.97438 * 10 9 7 41 41 H 1.08000 * 120.48308 * 0.29955 * 18 17 15 42 42 H 1.08008 * 119.87462 * 179.97438 * 19 18 17 43 43 H 0.96997 * 119.99770 * 359.97438 * 24 23 22 44 44 H 0.96996 * 119.99828 * 179.97438 * 24 23 22 45 45 H 1.08006 * 125.62480 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5003 -0.8249 1.1913 6 6 4.1278 -1.9368 0.4729 7 6 4.4631 -3.0379 1.4456 8 1 4.3139 -2.8868 2.5046 9 6 4.9604 -4.2380 0.9837 10 7 5.2290 -4.3901 -0.2947 11 14 5.2527 -5.6478 2.1738 12 1 4.0249 -6.4776 2.2692 13 1 6.3782 -6.4837 1.6841 14 1 5.5873 -5.1030 3.5140 15 6 4.2662 0.1028 1.7988 16 8 3.7459 1.0024 2.4296 17 6 5.7380 0.0264 1.6985 18 6 6.5199 0.0097 2.8346 19 6 7.9121 -0.0628 2.7005 20 7 8.4602 -0.1134 1.5082 21 6 7.7165 -0.0970 0.4022 22 6 8.0495 -0.1396 -0.9659 23 6 9.4005 -0.2193 -1.5336 24 7 9.5689 -0.2524 -2.8705 25 8 10.3688 -0.2547 -0.7975 26 6 6.8434 -0.0919 -1.6832 27 7 5.8507 -0.0251 -0.8332 28 7 6.3539 -0.0272 0.4720 29 1 -0.3633 0.5880 0.8429 30 1 -0.3634 0.4359 -0.9305 31 1 -0.3634 -1.0239 0.0879 32 1 1.8932 -0.5138 -0.8901 33 1 1.7582 1.9275 0.9345 34 1 3.1257 1.4439 -0.0972 35 1 1.5995 1.9836 -0.8374 36 1 1.6064 -1.7204 1.2944 37 1 1.7506 -0.1591 2.1370 38 1 3.4394 -2.3162 -0.2822 39 1 5.0407 -1.5882 -0.0101 40 1 5.5792 -5.2344 -0.6195 41 1 6.0651 0.0474 3.8134 42 1 8.5374 -0.0764 3.5811 43 1 8.7972 -0.2239 -3.4573 44 1 10.4619 -0.3048 -3.2456 45 1 6.7503 -0.1070 -2.7591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767335226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:40 Heat of formation + Delta-G solvation = 24.517139 kcal Electronic energy + Delta-G solvation = -31698.296266 eV Core-core repulsion = 27524.283764 eV Total energy + Delta-G solvation = -4174.012502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.62170 -41.10556 -40.00086 -39.00077 -37.62130 -36.01993 -34.99785 -34.49252 -34.18314 -32.23067 -30.53038 -29.49533 -28.26916 -27.91800 -26.05599 -25.21264 -24.99108 -23.77841 -22.37444 -21.06036 -20.35276 -19.51937 -18.89092 -18.61543 -18.18532 -18.11287 -17.67872 -17.10576 -16.96707 -16.60688 -16.16380 -16.09058 -15.56394 -15.34996 -15.13094 -14.87514 -14.73875 -14.50589 -14.31948 -14.03481 -13.96691 -13.78109 -13.29795 -13.16241 -12.90940 -12.82327 -12.73739 -12.54360 -12.40203 -12.22628 -12.10641 -11.89548 -11.67551 -11.61805 -11.51578 -11.01423 -10.83207 -10.74266 -10.62077 -10.55535 -9.59331 -9.12095 -8.28794 -6.42659 -0.90516 -0.34782 0.59627 1.07180 1.33282 1.34894 1.43142 1.49707 1.84366 2.10505 2.31571 2.57307 2.67192 2.78047 3.01383 3.05953 3.23727 3.74307 3.84711 3.87475 3.94569 3.97936 4.05834 4.14291 4.35677 4.54670 4.57610 4.60907 4.73669 4.81694 4.83880 4.85172 4.96982 5.03040 5.12130 5.18957 5.21712 5.30675 5.39194 5.42928 5.56256 5.66962 5.95613 6.03995 6.17567 6.29096 6.46567 6.61145 6.66241 6.89645 7.27608 7.50113 8.76205 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.005348 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.175732 B = 5234.302241 C = 6591.170012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.127 4.127 4 C 0.116 3.884 5 N -0.564 5.564 6 C 0.235 3.765 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.024 3.976 10 N -0.911 5.911 11 Si 0.950 3.050 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.564 3.436 16 O -0.553 6.553 17 C 0.152 3.848 18 C -0.166 4.166 19 C 0.202 3.798 20 N -0.475 5.475 21 C 0.304 3.696 22 C -0.320 4.320 23 C 0.603 3.397 24 N -0.828 5.828 25 O -0.587 6.587 26 C 0.135 3.865 27 N -0.315 5.315 28 N -0.290 5.290 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.204 0.796 42 H 0.241 0.759 43 H 0.415 0.585 44 H 0.413 0.587 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 8.764 -2.000 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.184 4.184 4 C -0.006 4.006 5 N -0.291 5.291 6 C 0.114 3.886 7 C -0.593 4.593 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.549 5.549 11 Si 0.775 3.225 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.190 1.190 15 C 0.348 3.652 16 O -0.434 6.434 17 C 0.032 3.968 18 C -0.190 4.190 19 C 0.021 3.979 20 N -0.187 5.187 21 C 0.071 3.929 22 C -0.336 4.336 23 C 0.390 3.610 24 N -0.393 5.393 25 O -0.468 6.468 26 C -0.047 4.047 27 N -0.137 5.137 28 N -0.059 5.059 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.221 0.779 42 H 0.257 0.743 43 H 0.246 0.754 44 H 0.246 0.754 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.263 9.076 -1.538 9.292 hybrid contribution 0.214 -1.290 -0.076 1.310 sum -1.049 7.786 -1.614 8.020 Atomic orbital electron populations 1.21701 0.92183 1.02447 1.02833 1.21420 0.97609 0.96189 0.97207 1.21646 0.99290 0.95796 1.01662 1.21756 0.78127 1.01341 0.99370 1.48124 1.07177 1.24455 1.49343 1.19580 0.94660 0.82945 0.91411 1.21689 1.44419 0.99464 0.93697 0.92699 1.25623 0.94713 1.00714 0.96693 1.70025 1.43811 1.26266 1.14797 0.85670 0.77982 0.79377 0.79495 1.19482 1.21217 1.18979 1.17497 0.84570 0.82712 0.80398 1.90757 1.73148 1.35493 1.43963 1.21258 0.95100 0.97385 0.83089 1.22803 0.95121 1.02381 0.98663 1.24441 0.92353 0.85281 0.95817 1.68076 1.36945 1.15881 0.97751 1.20824 0.79770 0.96694 0.95645 1.19461 0.95576 1.29741 0.88868 1.16832 0.86145 0.74760 0.83262 1.43243 1.13636 1.77317 1.05124 1.90808 1.42181 1.52885 1.60930 1.24741 0.87322 0.90868 1.01725 1.77610 1.22114 1.30265 0.83675 1.47023 1.07114 1.45580 1.06182 0.91727 0.91174 0.92095 0.92457 0.92883 0.95851 0.91507 0.90377 0.89887 0.96461 0.92530 0.92512 0.77916 0.74278 0.75360 0.75407 0.73687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.19 71.98 0.66 -2.37 16 2 C -0.10 -3.16 3.13 -10.80 -0.03 -3.19 16 3 C -0.13 -3.87 8.04 71.98 0.58 -3.29 16 4 C 0.12 4.05 4.94 86.38 0.43 4.48 16 5 N -0.56 -23.22 2.29 -829.73 -1.90 -25.12 16 6 C 0.23 11.28 4.83 85.63 0.41 11.69 16 7 C -0.55 -28.69 9.26 25.60 0.24 -28.46 16 8 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 9 C 0.02 1.26 5.45 84.66 0.46 1.72 16 10 N -0.91 -50.61 13.29 21.45 0.29 -50.33 16 11 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 15 C 0.56 22.82 5.86 86.75 0.51 23.32 16 16 O -0.55 -22.67 15.58 -3.93 -0.06 -22.73 16 17 C 0.15 5.89 5.66 40.71 0.23 6.12 16 18 C -0.17 -5.02 9.84 22.64 0.22 -4.80 16 19 C 0.20 5.62 11.27 85.21 0.96 6.58 16 20 N -0.47 -17.76 10.21 -191.91 -1.96 -19.72 16 21 C 0.30 12.26 7.74 134.02 1.04 13.29 16 22 C -0.32 -11.53 6.17 -19.88 -0.12 -11.65 16 23 C 0.60 20.31 8.06 86.47 0.70 21.01 16 24 N -0.83 -17.19 8.86 -176.32 -1.56 -18.76 16 25 O -0.59 -24.76 17.57 -4.30 -0.08 -24.84 16 26 C 0.13 4.22 11.44 85.37 0.98 5.20 16 27 N -0.32 -12.21 10.02 -56.65 -0.57 -12.77 16 28 N -0.29 -11.73 2.98 -180.59 -0.54 -12.27 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.63 7.98 -2.39 -0.02 1.61 16 34 H 0.02 0.83 6.92 -2.38 -0.02 0.81 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 37 H 0.08 2.81 7.26 -2.39 -0.02 2.79 16 38 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 39 H 0.06 2.84 3.67 -2.39 -0.01 2.83 16 40 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.20 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.24 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.42 5.65 7.75 -92.71 -0.72 4.93 16 44 H 0.41 7.02 8.93 -92.71 -0.83 6.19 16 45 H 0.25 4.62 7.46 -2.91 -0.02 4.60 16 Total: -1.00 -79.28 381.61 2.42 -76.86 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.48 Total: 26.01 kcal Atomic # 6 Polarization: 32.42 SS G_CDS: 7.26 Total: 39.67 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -6.24 Total: -138.96 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.14 Total: -47.57 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -79.28 2.42 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767335226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.379 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds