Wall clock time and date at job start Wed Apr 1 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46693 * 2 1 4 4 N 1.46501 * 109.47189 * 119.99945 * 2 1 3 5 5 C 1.46501 * 119.99837 * 306.34850 * 4 2 1 6 6 C 1.50702 * 109.46992 * 269.99895 * 5 4 2 7 7 H 1.07999 * 120.00327 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99603 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00352 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99727 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47174 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47328 * 119.99395 * 10 8 6 13 13 H 1.48504 * 109.46840 * 239.99645 * 10 8 6 14 14 C 1.34776 * 119.99847 * 126.34830 * 4 2 1 15 15 O 1.21413 * 119.99686 * 174.51478 * 14 4 2 16 16 C 1.49036 * 120.00057 * 354.51702 * 14 4 2 17 17 O 1.21940 * 120.00051 * 6.51863 * 16 14 4 18 18 N 1.32539 * 120.00231 * 186.51304 * 16 14 4 19 19 C 1.34631 * 120.00576 * 244.81671 * 18 16 14 20 20 C 1.40648 * 121.45760 * 355.84727 * 19 18 16 21 21 C 1.37532 * 119.23931 * 179.90965 * 20 19 18 22 22 N 1.32161 * 122.59718 * 359.56564 * 21 20 19 23 23 C 1.32011 * 122.82759 * 0.02562 * 22 21 20 24 24 N 1.37701 * 133.39203 * 180.02562 * 23 22 21 25 25 C 1.46499 * 125.99467 * 359.97438 * 24 23 22 26 26 N 1.40071 * 108.00797 * 179.72508 * 24 23 22 27 27 H 0.97002 * 125.41691 * 180.22838 * 26 24 23 28 28 C 1.34099 * 109.15905 * 0.24175 * 26 24 23 29 29 C 1.38940 * 108.51630 * 0.02562 * 28 26 24 30 30 H 1.09005 * 109.47473 * 305.06767 * 1 2 3 31 31 H 1.08994 * 109.47388 * 65.07074 * 1 2 3 32 32 H 1.09005 * 109.47130 * 185.07001 * 1 2 3 33 33 H 1.08997 * 109.47470 * 240.00291 * 2 1 3 34 34 H 1.09002 * 109.46700 * 184.92164 * 3 2 1 35 35 H 1.08993 * 109.47547 * 304.92152 * 3 2 1 36 36 H 1.09005 * 109.46855 * 64.92210 * 3 2 1 37 37 H 1.08991 * 109.47255 * 30.00090 * 5 4 2 38 38 H 1.08997 * 109.46886 * 150.00185 * 5 4 2 39 39 H 0.96997 * 120.00364 * 180.02562 * 9 8 6 40 40 H 1.07997 * 120.38151 * 359.47801 * 20 19 18 41 41 H 1.07999 * 118.69747 * 179.59024 * 21 20 19 42 42 H 1.08997 * 109.46964 * 269.71707 * 25 24 23 43 43 H 1.08998 * 109.46823 * 149.70654 * 25 24 23 44 44 H 1.09001 * 109.46648 * 29.71313 * 25 24 23 45 45 H 1.08006 * 125.74215 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5535 -0.2762 2.5223 6 6 2.4731 0.7859 3.0676 7 1 3.3189 1.1192 2.4846 8 6 2.2346 1.3320 4.3110 9 7 1.2044 0.9265 5.0207 10 14 3.3740 2.6491 4.9867 11 1 4.4490 2.9271 4.0006 12 1 2.6002 3.8910 5.2394 13 1 3.9790 2.1756 6.2576 14 6 2.8952 -1.7071 1.0766 15 8 3.3761 -2.2138 2.0696 16 6 3.2744 -2.2091 -0.2744 17 8 2.8860 -1.6262 -1.2726 18 7 4.0339 -3.2890 -0.3911 19 6 5.2651 -3.1915 -0.9270 20 6 5.7432 -1.9773 -1.4516 21 6 7.0093 -1.9288 -1.9867 22 7 7.8078 -2.9813 -2.0227 23 6 7.4565 -4.1626 -1.5497 24 7 8.0962 -5.3797 -1.4741 25 6 9.4506 -5.6716 -1.9502 26 7 7.2269 -6.2882 -0.8569 27 1 7.4248 -7.2200 -0.6740 28 6 6.0774 -5.6648 -0.5595 29 6 6.1722 -4.3425 -0.9751 30 1 -0.3634 0.5905 0.8411 31 1 -0.3634 0.4331 -0.9318 32 1 -0.3634 -1.0237 0.0908 33 1 1.8933 -0.5138 -0.8900 34 1 3.1263 1.4439 -0.0882 35 1 1.6064 1.9812 -0.8425 36 1 1.7502 1.9303 0.9308 37 1 0.5425 0.1235 2.4444 38 1 1.5537 -1.1359 3.1923 39 1 1.0364 1.3110 5.8952 40 1 5.1207 -1.0948 -1.4408 41 1 7.3650 -0.9936 -2.3931 42 1 9.4072 -6.0050 -2.9870 43 1 9.8910 -6.4556 -1.3343 44 1 10.0610 -4.7710 -1.8833 45 1 5.2219 -6.1150 -0.0778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807000002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:14 Heat of formation + Delta-G solvation = 117.513470 kcal Electronic energy + Delta-G solvation = -30310.074708 eV Core-core repulsion = 26140.094830 eV Total energy + Delta-G solvation = -4169.979878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.36262 -40.08535 -38.44478 -37.40602 -35.89838 -34.82973 -33.61207 -32.61238 -31.45281 -30.55689 -29.66759 -27.61719 -27.53396 -26.38971 -25.46577 -23.92071 -23.10544 -22.27317 -21.06691 -20.04981 -19.26921 -18.84262 -17.77944 -16.70938 -16.66197 -16.29681 -16.11298 -16.01925 -15.31195 -15.05396 -14.81376 -14.47575 -14.16447 -13.96571 -13.92738 -13.38809 -13.25821 -13.15804 -13.04877 -12.89081 -12.55431 -12.13527 -12.01565 -11.70300 -11.37470 -11.33758 -11.19953 -10.94185 -10.73956 -10.49553 -10.35564 -10.02471 -9.94682 -9.78521 -9.49137 -9.39065 -9.34355 -9.13081 -8.29091 -7.91853 -7.43568 -7.10028 -5.90118 -3.92258 -0.05201 0.47066 1.48680 1.75528 2.30509 2.70932 3.39103 3.45778 3.51301 3.67166 3.84769 3.90711 4.00082 4.22720 4.25927 4.46832 4.55380 4.56425 4.71194 4.74152 4.85678 5.13455 5.24753 5.43651 5.58917 5.79545 5.86223 5.89790 6.00571 6.10996 6.25943 6.41829 6.43587 6.53179 6.58452 6.64947 6.69636 6.84153 6.98421 7.20732 7.32595 7.60400 7.66978 7.98285 8.00547 8.07483 8.36525 8.40891 8.67938 9.05040 9.21670 9.70613 11.18096 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.002941 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.160794 B = 9519.009711 C =10151.120255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 C -0.153 4.153 4 N -0.560 5.560 5 C 0.240 3.760 6 C -0.512 4.512 7 H 0.059 0.941 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.487 3.513 15 O -0.514 6.514 16 C 0.508 3.492 17 O -0.497 6.497 18 N -0.621 5.621 19 C 0.369 3.631 20 C -0.323 4.323 21 C 0.210 3.790 22 N -0.594 5.594 23 C 0.437 3.563 24 N -0.388 5.388 25 C 0.107 3.893 26 N -0.436 5.436 27 H 0.458 0.542 28 C 0.251 3.749 29 C -0.268 4.268 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.159 0.841 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.315 -18.374 -17.128 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.043 4.043 3 C -0.211 4.211 4 N -0.293 5.293 5 C 0.121 3.879 6 C -0.551 4.551 7 H 0.078 0.922 8 C -0.143 4.143 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.268 3.732 15 O -0.390 6.390 16 C 0.293 3.707 17 O -0.375 6.375 18 N -0.358 5.358 19 C 0.212 3.788 20 C -0.352 4.352 21 C 0.064 3.936 22 N -0.322 5.322 23 C 0.187 3.813 24 N -0.187 5.187 25 C -0.032 4.032 26 N -0.144 5.144 27 H 0.307 0.693 28 C 0.098 3.902 29 C -0.283 4.283 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.174 0.826 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 16.779 -18.933 -17.010 30.485 hybrid contribution -0.118 0.914 0.952 1.325 sum 16.661 -18.020 -16.058 29.329 Atomic orbital electron populations 1.22063 0.96260 1.01382 1.01427 1.22843 0.94312 0.95170 0.91995 1.22092 1.00317 0.96443 1.02206 1.48370 1.40759 1.30484 1.09695 1.19367 0.95215 0.95998 0.77361 1.21487 1.11573 1.20210 1.01841 0.92246 1.24927 0.95526 0.97221 0.96602 1.69947 1.28260 1.43200 1.12302 0.86487 0.80895 0.81370 0.78973 1.19766 1.21074 1.21032 1.19945 0.81950 0.82301 0.89045 1.90689 1.51688 1.58477 1.38174 1.21670 0.81608 0.77509 0.89938 1.90262 1.53452 1.52683 1.41106 1.67815 1.07123 1.27456 1.33399 1.18564 0.87996 0.88938 0.83308 1.22419 1.00313 0.99440 1.12994 1.22001 0.88195 0.93908 0.89460 1.66374 1.38108 0.96679 1.31042 1.18275 0.86814 0.86062 0.90116 1.46263 1.11950 1.03056 1.57391 1.22184 0.76186 1.04812 1.00033 1.43851 1.09398 1.09680 1.51452 0.69331 1.23382 0.87005 0.92071 0.87708 1.19269 0.97518 0.94447 1.17055 0.92158 0.92630 0.93312 0.82598 0.93680 0.93431 0.90605 0.94242 0.94237 0.92978 0.84345 0.82484 0.90389 0.89590 0.87222 0.76063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.90 37.16 0.33 -2.63 16 2 C 0.06 1.27 3.10 -67.93 -0.21 1.06 16 3 C -0.15 -3.16 8.80 37.16 0.33 -2.84 16 4 N -0.56 -14.14 2.39 -168.13 -0.40 -14.54 16 5 C 0.24 6.83 4.70 -5.19 -0.02 6.81 16 6 C -0.51 -15.38 7.73 -34.44 -0.27 -15.64 16 7 H 0.06 1.81 7.58 -52.49 -0.40 1.41 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 10 Si 0.89 22.95 29.54 -169.99 -5.02 17.93 16 11 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.49 12.44 7.71 -11.78 -0.09 12.35 16 15 O -0.51 -14.63 16.55 5.44 0.09 -14.54 16 16 C 0.51 11.30 6.15 -12.77 -0.08 11.22 16 17 O -0.50 -10.83 12.52 4.97 0.06 -10.77 16 18 N -0.62 -12.28 10.31 -9.51 -0.10 -12.38 16 19 C 0.37 6.16 6.79 -82.35 -0.56 5.60 16 20 C -0.32 -5.23 9.15 -38.93 -0.36 -5.58 16 21 C 0.21 2.73 11.07 -17.67 -0.20 2.54 16 22 N -0.59 -7.20 10.31 -12.22 -0.13 -7.32 16 23 C 0.44 4.54 8.05 -155.56 -1.25 3.29 16 24 N -0.39 -2.06 4.09 -66.88 -0.27 -2.33 16 25 C 0.11 0.16 11.49 59.85 0.69 0.85 16 26 N -0.44 -1.06 7.12 31.00 0.22 -0.84 16 27 H 0.46 -1.08 8.96 -182.62 -1.64 -2.72 16 28 C 0.25 1.48 12.06 -16.30 -0.20 1.28 16 29 C -0.27 -3.12 6.34 -104.88 -0.67 -3.78 16 30 H 0.06 1.23 6.75 -51.93 -0.35 0.88 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.16 3.38 3.55 -57.79 -0.21 3.17 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.75 6.59 -51.93 -0.34 1.41 16 37 H 0.04 1.13 6.23 -51.93 -0.32 0.81 16 38 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.14 2.48 6.46 -52.49 -0.34 2.14 16 41 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 44 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.22 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -43.91 379.96 -8.66 -52.57 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.92 Total: -2.63 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: -2.65 Total: 16.16 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.06 Total: -64.44 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.15 Total: -25.31 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -43.91 -8.66 -52.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807000002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.084 kcal (2) G-P(sol) polarization free energy of solvation -43.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds