Wall clock time and date at job start Wed Apr 1 2020 04:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46693 * 2 1 4 4 N 1.46501 * 109.47189 * 119.99945 * 2 1 3 5 5 C 1.46501 * 119.99837 * 306.34850 * 4 2 1 6 6 C 1.50702 * 109.46992 * 269.99895 * 5 4 2 7 7 H 1.07999 * 120.00327 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99603 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00352 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99727 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47174 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47328 * 119.99395 * 10 8 6 13 13 H 1.48504 * 109.46840 * 239.99645 * 10 8 6 14 14 C 1.34776 * 119.99847 * 126.34830 * 4 2 1 15 15 O 1.21413 * 119.99686 * 174.51478 * 14 4 2 16 16 C 1.49036 * 120.00057 * 354.51702 * 14 4 2 17 17 O 1.21940 * 120.00051 * 6.51863 * 16 14 4 18 18 N 1.32539 * 120.00231 * 186.51304 * 16 14 4 19 19 C 1.34631 * 120.00576 * 244.81671 * 18 16 14 20 20 C 1.40648 * 121.45760 * 355.84727 * 19 18 16 21 21 C 1.37532 * 119.23931 * 179.90965 * 20 19 18 22 22 N 1.32161 * 122.59718 * 359.56564 * 21 20 19 23 23 C 1.32011 * 122.82759 * 0.02562 * 22 21 20 24 24 N 1.37701 * 133.39203 * 180.02562 * 23 22 21 25 25 C 1.46499 * 125.99467 * 359.97438 * 24 23 22 26 26 N 1.40071 * 108.00797 * 179.72508 * 24 23 22 27 27 H 0.97002 * 125.41691 * 180.22838 * 26 24 23 28 28 C 1.34099 * 109.15905 * 0.24175 * 26 24 23 29 29 C 1.38940 * 108.51630 * 0.02562 * 28 26 24 30 30 H 1.09005 * 109.47473 * 305.06767 * 1 2 3 31 31 H 1.08994 * 109.47388 * 65.07074 * 1 2 3 32 32 H 1.09005 * 109.47130 * 185.07001 * 1 2 3 33 33 H 1.08997 * 109.47470 * 240.00291 * 2 1 3 34 34 H 1.09002 * 109.46700 * 184.92164 * 3 2 1 35 35 H 1.08993 * 109.47547 * 304.92152 * 3 2 1 36 36 H 1.09005 * 109.46855 * 64.92210 * 3 2 1 37 37 H 1.08991 * 109.47255 * 30.00090 * 5 4 2 38 38 H 1.08997 * 109.46886 * 150.00185 * 5 4 2 39 39 H 0.96997 * 120.00364 * 180.02562 * 9 8 6 40 40 H 1.07997 * 120.38151 * 359.47801 * 20 19 18 41 41 H 1.07999 * 118.69747 * 179.59024 * 21 20 19 42 42 H 1.08997 * 109.46964 * 269.71707 * 25 24 23 43 43 H 1.08998 * 109.46823 * 149.70654 * 25 24 23 44 44 H 1.09001 * 109.46648 * 29.71313 * 25 24 23 45 45 H 1.08006 * 125.74215 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5535 -0.2762 2.5223 6 6 2.4731 0.7859 3.0676 7 1 3.3189 1.1192 2.4846 8 6 2.2346 1.3320 4.3110 9 7 1.2044 0.9265 5.0207 10 14 3.3740 2.6491 4.9867 11 1 4.4490 2.9271 4.0006 12 1 2.6002 3.8910 5.2394 13 1 3.9790 2.1756 6.2576 14 6 2.8952 -1.7071 1.0766 15 8 3.3761 -2.2138 2.0696 16 6 3.2744 -2.2091 -0.2744 17 8 2.8860 -1.6262 -1.2726 18 7 4.0339 -3.2890 -0.3911 19 6 5.2651 -3.1915 -0.9270 20 6 5.7432 -1.9773 -1.4516 21 6 7.0093 -1.9288 -1.9867 22 7 7.8078 -2.9813 -2.0227 23 6 7.4565 -4.1626 -1.5497 24 7 8.0962 -5.3797 -1.4741 25 6 9.4506 -5.6716 -1.9502 26 7 7.2269 -6.2882 -0.8569 27 1 7.4248 -7.2200 -0.6740 28 6 6.0774 -5.6648 -0.5595 29 6 6.1722 -4.3425 -0.9751 30 1 -0.3634 0.5905 0.8411 31 1 -0.3634 0.4331 -0.9318 32 1 -0.3634 -1.0237 0.0908 33 1 1.8933 -0.5138 -0.8900 34 1 3.1263 1.4439 -0.0882 35 1 1.6064 1.9812 -0.8425 36 1 1.7502 1.9303 0.9308 37 1 0.5425 0.1235 2.4444 38 1 1.5537 -1.1359 3.1923 39 1 1.0364 1.3110 5.8952 40 1 5.1207 -1.0948 -1.4408 41 1 7.3650 -0.9936 -2.3931 42 1 9.4072 -6.0050 -2.9870 43 1 9.8910 -6.4556 -1.3343 44 1 10.0610 -4.7710 -1.8833 45 1 5.2219 -6.1150 -0.0778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807000002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:13 Heat of formation + Delta-G solvation = 81.475319 kcal Electronic energy + Delta-G solvation = -30311.637439 eV Core-core repulsion = 26140.094830 eV Total energy + Delta-G solvation = -4171.542610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.10753 -41.70018 -39.72307 -38.85171 -37.72765 -35.85218 -34.88589 -34.38707 -32.46549 -32.25865 -30.76252 -29.68957 -28.07074 -28.04060 -26.73208 -25.54094 -24.30128 -23.68575 -22.47203 -21.45083 -20.27005 -19.81452 -18.90191 -18.64583 -17.91792 -17.86254 -17.25616 -17.23633 -16.76843 -16.51896 -16.25013 -15.75671 -15.52224 -15.31134 -14.97535 -14.82827 -14.55874 -14.39788 -14.15091 -13.82023 -13.78620 -13.65088 -13.43432 -13.41730 -13.32934 -13.07828 -12.80783 -12.71228 -12.48109 -12.40095 -12.22793 -12.09105 -11.58668 -11.31961 -11.04732 -10.62148 -10.58937 -10.34701 -10.16447 -9.60839 -9.45582 -8.24268 -8.19128 -6.32367 -0.83256 -0.05097 0.21536 0.62252 1.10582 1.34699 1.36939 1.49960 1.94229 2.14937 2.34956 2.40552 2.87263 3.07931 3.15187 3.32007 3.34844 3.75462 3.90818 4.04041 4.13939 4.27283 4.29896 4.33524 4.39726 4.59756 4.67349 4.72924 4.74351 4.82721 4.85400 4.93629 4.96365 5.03388 5.12488 5.16978 5.28352 5.37900 5.50473 5.54830 5.61323 5.79254 5.80525 6.08501 6.08779 6.43735 6.62360 6.73972 7.04148 7.05324 7.28100 7.39617 8.88043 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.002941 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.160794 B = 9519.009711 C =10151.120255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 C -0.143 4.143 4 N -0.566 5.566 5 C 0.257 3.743 6 C -0.528 4.528 7 H 0.048 0.952 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.271 1.271 12 H -0.267 1.267 13 H -0.277 1.277 14 C 0.473 3.527 15 O -0.559 6.559 16 C 0.521 3.479 17 O -0.513 6.513 18 N -0.672 5.672 19 C 0.362 3.638 20 C -0.376 4.376 21 C 0.241 3.759 22 N -0.600 5.600 23 C 0.425 3.575 24 N -0.370 5.370 25 C 0.094 3.906 26 N -0.378 5.378 27 H 0.488 0.512 28 C 0.291 3.709 29 C -0.311 4.311 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.166 0.834 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.033 0.967 38 H -0.004 1.004 39 H 0.267 0.733 40 H 0.107 0.893 41 H 0.182 0.818 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.799 -20.867 -18.677 34.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.201 4.201 4 N -0.298 5.298 5 C 0.137 3.863 6 C -0.566 4.566 7 H 0.066 0.934 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.196 1.196 12 H -0.192 1.192 13 H -0.203 1.203 14 C 0.256 3.744 15 O -0.438 6.438 16 C 0.305 3.695 17 O -0.393 6.393 18 N -0.416 5.416 19 C 0.214 3.786 20 C -0.406 4.406 21 C 0.090 3.910 22 N -0.328 5.328 23 C 0.176 3.824 24 N -0.166 5.166 25 C -0.043 4.043 26 N -0.086 5.086 27 H 0.344 0.656 28 C 0.130 3.870 29 C -0.325 4.325 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.181 0.819 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.199 0.801 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.122 0.878 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 20.445 -21.605 -18.627 35.096 hybrid contribution -0.772 1.249 1.298 1.960 sum 19.673 -20.355 -17.329 33.191 Atomic orbital electron populations 1.22006 0.94436 1.01265 1.02620 1.23173 0.95858 0.95326 0.90668 1.22003 0.99794 0.96049 1.02286 1.48496 1.40806 1.31021 1.09494 1.18880 0.94933 0.93840 0.78697 1.21589 1.11574 1.20933 1.02538 0.93421 1.25833 0.97153 0.99491 0.96621 1.70058 1.29661 1.44324 1.12782 0.85384 0.78748 0.78705 0.78087 1.19583 1.19159 1.20280 1.20964 0.80958 0.81689 0.90825 1.90607 1.53276 1.59833 1.40090 1.20975 0.82721 0.78189 0.87649 1.90176 1.54566 1.54050 1.40463 1.67578 1.08734 1.24566 1.40732 1.18993 0.87192 0.90820 0.81604 1.22282 1.01970 0.99104 1.17291 1.22358 0.86798 0.95169 0.86676 1.66469 1.37560 0.97216 1.31548 1.18481 0.87084 0.87070 0.89730 1.46767 1.12883 1.01815 1.55104 1.22689 0.73597 1.05977 1.02020 1.44196 1.07514 1.10353 1.46501 0.65633 1.23864 0.88173 0.90068 0.84871 1.19321 0.97457 0.95831 1.19936 0.93837 0.88885 0.93590 0.81930 0.94809 0.89605 0.93319 0.94924 0.98552 0.92387 0.87458 0.80079 0.88427 0.85448 0.87832 0.72715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 8.90 71.98 0.64 -5.15 16 2 C 0.05 2.29 3.10 44.99 0.14 2.43 16 3 C -0.14 -6.19 8.80 71.98 0.63 -5.55 16 4 N -0.57 -30.83 2.39 -804.18 -1.92 -32.75 16 5 C 0.26 15.79 4.70 85.63 0.40 16.19 16 6 C -0.53 -33.48 7.73 25.60 0.20 -33.28 16 7 H 0.05 3.07 7.58 -2.91 -0.02 3.05 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -59.35 13.29 21.45 0.28 -59.06 16 10 Si 0.97 48.26 29.54 68.60 2.03 50.29 16 11 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 C 0.47 26.28 7.71 87.14 0.67 26.95 16 15 O -0.56 -34.54 16.55 -3.44 -0.06 -34.60 16 16 C 0.52 25.11 6.15 87.49 0.54 25.65 16 17 O -0.51 -24.08 12.52 -5.12 -0.06 -24.15 16 18 N -0.67 -28.41 10.31 -303.35 -3.13 -31.53 16 19 C 0.36 12.69 6.79 41.49 0.28 12.97 16 20 C -0.38 -13.09 9.15 22.69 0.21 -12.88 16 21 C 0.24 6.33 11.07 84.48 0.94 7.27 16 22 N -0.60 -13.64 10.31 -192.59 -1.99 -15.63 16 23 C 0.42 7.72 8.05 134.29 1.08 8.80 16 24 N -0.37 -2.08 4.09 -365.52 -1.50 -3.58 16 25 C 0.09 -0.25 11.49 127.77 1.47 1.22 16 26 N -0.38 0.42 7.12 -55.84 -0.40 0.02 16 27 H 0.49 -5.93 8.96 -213.34 -1.91 -7.84 16 28 C 0.29 2.25 12.06 84.52 1.02 3.27 16 29 C -0.31 -6.80 6.34 -20.03 -0.13 -6.92 16 30 H 0.04 1.85 6.75 -2.38 -0.02 1.83 16 31 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.17 7.43 3.55 -95.21 -0.34 7.09 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.05 2.34 6.59 -2.38 -0.02 2.33 16 37 H 0.03 2.02 6.23 -2.39 -0.01 2.00 16 38 H 0.00 -0.25 7.50 -2.39 -0.02 -0.27 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.11 4.32 6.46 -2.91 -0.02 4.30 16 41 H 0.18 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 44 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.26 0.45 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -107.93 379.96 0.63 -107.30 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -1.19 Total: 1.81 kcal Atomic # 6 Polarization: 33.33 SS G_CDS: 8.55 Total: 41.89 kcal Atomic # 7 Polarization: -133.90 SS G_CDS: -8.64 Total: -142.54 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -0.12 Total: -58.74 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -107.93 0.63 -107.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807000002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.775 kcal (2) G-P(sol) polarization free energy of solvation -107.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds