Wall clock time and date at job start Wed Apr 1 2020 04:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 N 1.46897 * 109.47169 * 119.99845 * 2 1 3 5 5 C 1.46905 * 111.00005 * 294.51984 * 4 2 1 6 6 C 1.50697 * 109.47319 * 77.03464 * 5 4 2 7 7 H 1.08002 * 119.99819 * 1.19880 * 6 5 4 8 8 C 1.37875 * 119.99801 * 181.18764 * 6 5 4 9 9 N 1.31512 * 120.00126 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00252 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47471 * 89.99682 * 10 8 6 12 12 H 1.48502 * 109.47346 * 209.99641 * 10 8 6 13 13 H 1.48501 * 109.47220 * 329.99718 * 10 8 6 14 14 C 1.46895 * 111.00320 * 170.56341 * 4 2 1 15 15 N 1.46508 * 109.47115 * 293.95375 * 14 4 2 16 16 C 1.35051 * 125.92544 * 94.99537 * 15 14 4 17 17 C 1.35065 * 107.98493 * 179.97438 * 16 15 14 18 18 N 1.48024 * 126.07218 * 179.97438 * 17 16 15 19 19 O 1.21799 * 120.00060 * 0.02562 * 18 17 16 20 20 O 1.21799 * 119.99596 * 180.02562 * 18 17 16 21 21 C 1.40876 * 107.85237 * 359.97438 * 17 16 15 22 22 C 1.48341 * 126.04068 * 179.97438 * 21 17 16 23 23 C 1.39344 * 119.72657 * 154.73267 * 22 21 17 24 24 C 1.38381 * 119.06955 * 179.75455 * 23 22 21 25 25 C 1.38804 * 118.50913 * 0.50787 * 24 23 22 26 26 C 1.38219 * 119.37248 * 359.72968 * 25 24 23 27 27 N 1.31787 * 120.89324 * 0.02562 * 26 25 24 28 28 N 1.31662 * 107.91222 * 359.76112 * 21 17 16 29 29 H 1.09007 * 109.47201 * 66.88903 * 1 2 3 30 30 H 1.08996 * 109.47339 * 186.88363 * 1 2 3 31 31 H 1.09001 * 109.47332 * 306.89118 * 1 2 3 32 32 H 1.08999 * 109.46939 * 240.00069 * 2 1 3 33 33 H 1.09000 * 109.47621 * 59.99932 * 3 2 1 34 34 H 1.08997 * 109.47151 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47135 * 299.99763 * 3 2 1 36 36 H 1.08999 * 109.46896 * 197.04247 * 5 4 2 37 37 H 1.09004 * 109.46781 * 317.03396 * 5 4 2 38 38 H 0.97002 * 120.00833 * 180.02562 * 9 8 6 39 39 H 1.08996 * 109.47151 * 53.95028 * 14 4 2 40 40 H 1.09001 * 109.47650 * 173.95089 * 14 4 2 41 41 H 1.07995 * 126.00730 * 359.93332 * 16 15 14 42 42 H 1.08001 * 120.46718 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.74771 * 180.24031 * 24 23 22 44 44 H 1.08005 * 120.31379 * 179.70621 * 25 24 23 45 45 H 1.08002 * 119.55321 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6585 0.0452 2.4175 6 6 0.2035 -0.1878 2.7330 7 1 -0.3885 -0.8359 2.1038 8 6 -0.3719 0.4264 3.8251 9 7 -1.6416 0.2227 4.1009 10 14 0.6519 1.5477 4.9132 11 1 0.5740 2.9397 4.4018 12 1 0.1297 1.5009 6.3026 13 1 2.0658 1.0940 4.9002 14 6 3.4706 -0.9099 1.1264 15 7 3.7703 -1.8438 0.0380 16 6 4.1156 -1.5063 -1.2232 17 6 4.3093 -2.6460 -1.9217 18 7 4.6997 -2.7393 -3.3465 19 8 4.8764 -1.7250 -3.9972 20 8 4.8443 -3.8304 -3.8680 21 6 4.0736 -3.7300 -1.0534 22 6 4.1724 -5.1677 -1.4055 23 6 4.4373 -6.1061 -0.4101 24 6 4.5214 -7.4442 -0.7528 25 6 4.3484 -7.7994 -2.0834 26 6 4.0933 -6.8155 -3.0201 27 7 4.0133 -5.5486 -2.6661 28 7 3.7548 -3.2415 0.1269 29 1 -0.3634 0.4034 -0.9452 30 1 -0.3634 -1.0202 0.1232 31 1 -0.3634 0.6169 0.8219 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.2711 -0.3040 3.2487 37 1 1.8306 1.1102 2.2617 38 1 -2.0466 0.6550 4.8690 39 1 3.9713 0.0398 0.9383 40 1 3.8237 -1.3261 2.0699 41 1 4.2182 -0.5017 -1.6061 42 1 4.5714 -5.7940 0.6151 43 1 4.7216 -8.1948 -0.0026 44 1 4.4128 -8.8348 -2.3841 45 1 3.9586 -7.0886 -4.0563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853492604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:20 Heat of formation + Delta-G solvation = 152.945676 kcal Electronic energy + Delta-G solvation = -30454.019123 eV Core-core repulsion = 26285.575700 eV Total energy + Delta-G solvation = -4168.443423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33193 -41.17537 -40.07127 -38.30937 -36.14141 -33.94019 -32.72368 -32.59991 -31.94084 -30.99733 -30.45445 -28.28298 -26.79583 -26.18307 -25.20688 -23.71464 -23.31718 -22.28787 -21.39122 -20.84329 -19.44008 -18.65676 -18.21035 -17.33802 -17.12261 -17.09106 -16.38710 -16.24405 -16.06816 -15.74546 -15.21230 -14.64870 -14.45193 -14.16570 -13.90332 -13.73075 -13.51485 -13.21092 -13.10885 -12.68224 -12.30860 -12.02421 -11.82784 -11.71050 -11.53403 -11.36066 -11.21221 -11.00911 -10.95538 -10.79540 -10.77171 -10.60971 -10.42636 -10.24734 -10.09328 -9.95893 -9.57980 -9.39496 -9.26964 -8.95445 -8.70889 -7.88311 -6.20452 -4.17417 0.33261 0.64471 1.13999 1.34719 1.60769 2.17154 2.36426 3.12311 3.18986 3.22950 3.58505 3.72975 3.96827 4.23318 4.25701 4.40846 4.45753 4.67611 4.73530 4.85872 4.88455 5.04406 5.07025 5.13412 5.20564 5.22935 5.40904 5.49651 5.54648 5.62262 5.85296 5.87208 5.97742 6.06035 6.15874 6.22364 6.30675 6.43623 6.54036 6.57683 6.70055 6.82110 6.95036 7.17218 7.35154 7.48450 7.61366 7.82120 8.05701 8.42884 8.90328 9.37597 10.91332 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002999 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.827706 B = 9334.362466 C =10415.322017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 C -0.191 4.191 4 N -0.529 5.529 5 C 0.162 3.838 6 C -0.510 4.510 7 H 0.093 0.907 8 C 0.071 3.929 9 N -0.893 5.893 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.283 3.717 15 N -0.320 5.320 16 C 0.149 3.851 17 C -0.171 4.171 18 N 0.066 4.934 19 O -0.214 6.214 20 O -0.104 6.104 21 C 0.167 3.833 22 C 0.177 3.823 23 C -0.131 4.131 24 C -0.082 4.082 25 C -0.161 4.161 26 C 0.104 3.896 27 N -0.423 5.423 28 N -0.227 5.227 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.201 0.799 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.278 -8.774 -9.854 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.250 4.250 4 N -0.254 5.254 5 C 0.037 3.963 6 C -0.548 4.548 7 H 0.111 0.889 8 C -0.132 4.132 9 N -0.531 5.531 10 Si 0.696 3.304 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.074 3.926 15 N -0.100 5.100 16 C -0.006 4.006 17 C -0.269 4.269 18 N 0.584 4.416 19 O -0.413 6.413 20 O -0.332 6.332 21 C -0.002 4.002 22 C 0.039 3.961 23 C -0.152 4.152 24 C -0.108 4.108 25 C -0.181 4.181 26 C -0.055 4.055 27 N -0.133 5.133 28 N -0.050 5.050 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.218 0.782 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.165 -8.464 -8.276 17.705 hybrid contribution 1.260 1.026 0.179 1.635 sum 14.425 -7.438 -8.098 18.137 Atomic orbital electron populations 1.22096 0.92473 1.03591 1.01580 1.21633 0.98170 0.91271 0.91567 1.22548 0.99656 0.99190 1.03595 1.62168 1.07231 1.51096 1.04869 1.20351 0.99090 0.91531 0.85360 1.21095 0.92383 1.29319 1.12006 0.88913 1.24870 0.94797 0.96478 0.97005 1.69861 1.11240 1.43661 1.28372 0.86973 0.80978 0.81577 0.80850 1.20244 1.21008 1.19365 1.22629 0.93220 0.88847 0.87894 1.49097 1.47392 1.04936 1.08590 1.22254 0.93302 0.99978 0.85024 1.20868 1.25974 0.94551 0.85516 1.42344 0.97691 1.00553 1.01007 1.94515 1.57588 1.26827 1.62354 1.94622 1.52289 1.14574 1.71735 1.20140 0.98136 0.92175 0.89728 1.18307 0.99317 0.88609 0.89896 1.22077 0.99258 0.93328 1.00575 1.21529 0.96798 0.95774 0.96705 1.22325 1.00305 1.01407 0.94101 1.22801 0.95263 0.87025 1.00375 1.67854 1.09904 1.19021 1.16529 1.78000 1.20576 0.88134 1.18264 0.94707 0.92378 0.88146 0.92555 0.90429 0.93940 0.92043 0.95310 0.97526 0.92441 0.90381 0.86464 0.78247 0.84138 0.84358 0.84478 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.75 37.16 0.29 -2.34 16 2 C 0.08 1.35 2.82 -67.71 -0.19 1.16 16 3 C -0.19 -2.68 8.53 37.16 0.32 -2.37 16 4 N -0.53 -9.39 4.60 -231.97 -1.07 -10.45 16 5 C 0.16 3.30 3.59 -4.97 -0.02 3.28 16 6 C -0.51 -12.81 7.26 -34.44 -0.25 -13.06 16 7 H 0.09 2.59 6.04 -52.49 -0.32 2.27 16 8 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 9 N -0.89 -25.49 13.96 55.43 0.77 -24.72 16 10 Si 0.87 19.45 27.44 -169.99 -4.67 14.79 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -5.67 6.58 56.52 0.37 -5.29 16 14 C 0.28 3.93 6.02 -63.31 -0.38 3.55 16 15 N -0.32 -4.53 3.49 -64.42 -0.22 -4.75 16 16 C 0.15 1.94 9.51 -17.26 -0.16 1.78 16 17 C -0.17 -2.60 7.12 -80.07 -0.57 -3.17 16 18 N 0.07 1.08 4.45 33.90 0.15 1.23 16 19 O -0.21 -3.51 19.02 -29.46 -0.56 -4.07 16 20 O -0.10 -1.73 15.37 -29.46 -0.45 -2.19 16 21 C 0.17 2.56 6.91 -82.78 -0.57 1.99 16 22 C 0.18 2.49 6.58 -82.94 -0.55 1.95 16 23 C -0.13 -1.50 9.74 -39.12 -0.38 -1.88 16 24 C -0.08 -0.72 10.17 -39.32 -0.40 -1.12 16 25 C -0.16 -1.30 10.11 -39.38 -0.40 -1.69 16 26 C 0.10 1.06 11.17 -17.58 -0.20 0.86 16 27 N -0.42 -5.89 6.69 -9.78 -0.07 -5.95 16 28 N -0.23 -3.57 12.46 33.42 0.42 -3.15 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.20 7.49 -51.93 -0.39 0.81 16 31 H 0.10 2.17 5.72 -51.93 -0.30 1.87 16 32 H 0.06 0.89 6.12 -51.93 -0.32 0.57 16 33 H 0.08 1.23 5.98 -51.93 -0.31 0.92 16 34 H 0.04 0.49 6.55 -51.93 -0.34 0.15 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.59 6.85 -51.93 -0.36 0.24 16 37 H 0.01 0.14 4.73 -51.93 -0.25 -0.10 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16 40 H 0.12 1.57 7.82 -51.93 -0.41 1.16 16 41 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.14 1.49 8.02 -52.49 -0.42 1.07 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -31.19 369.53 -9.12 -40.31 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.43 Total: 2.68 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.56 Total: -9.30 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.02 Total: -47.80 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -1.01 Total: -6.25 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.19 -9.12 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853492604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.256 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds