Wall clock time and date at job start Wed Apr 1 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 N 1.46897 * 109.47169 * 119.99845 * 2 1 3 5 5 C 1.46905 * 111.00005 * 294.51984 * 4 2 1 6 6 C 1.50697 * 109.47319 * 77.03464 * 5 4 2 7 7 H 1.08002 * 119.99819 * 1.19880 * 6 5 4 8 8 C 1.37875 * 119.99801 * 181.18764 * 6 5 4 9 9 N 1.31512 * 120.00126 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00252 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47471 * 89.99682 * 10 8 6 12 12 H 1.48502 * 109.47346 * 209.99641 * 10 8 6 13 13 H 1.48501 * 109.47220 * 329.99718 * 10 8 6 14 14 C 1.46895 * 111.00320 * 170.56341 * 4 2 1 15 15 N 1.46508 * 109.47115 * 293.95375 * 14 4 2 16 16 C 1.35051 * 125.92544 * 94.99537 * 15 14 4 17 17 C 1.35065 * 107.98493 * 179.97438 * 16 15 14 18 18 N 1.48024 * 126.07218 * 179.97438 * 17 16 15 19 19 O 1.21799 * 120.00060 * 0.02562 * 18 17 16 20 20 O 1.21799 * 119.99596 * 180.02562 * 18 17 16 21 21 C 1.40876 * 107.85237 * 359.97438 * 17 16 15 22 22 C 1.48341 * 126.04068 * 179.97438 * 21 17 16 23 23 C 1.39344 * 119.72657 * 154.73267 * 22 21 17 24 24 C 1.38381 * 119.06955 * 179.75455 * 23 22 21 25 25 C 1.38804 * 118.50913 * 0.50787 * 24 23 22 26 26 C 1.38219 * 119.37248 * 359.72968 * 25 24 23 27 27 N 1.31787 * 120.89324 * 0.02562 * 26 25 24 28 28 N 1.31662 * 107.91222 * 359.76112 * 21 17 16 29 29 H 1.09007 * 109.47201 * 66.88903 * 1 2 3 30 30 H 1.08996 * 109.47339 * 186.88363 * 1 2 3 31 31 H 1.09001 * 109.47332 * 306.89118 * 1 2 3 32 32 H 1.08999 * 109.46939 * 240.00069 * 2 1 3 33 33 H 1.09000 * 109.47621 * 59.99932 * 3 2 1 34 34 H 1.08997 * 109.47151 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47135 * 299.99763 * 3 2 1 36 36 H 1.08999 * 109.46896 * 197.04247 * 5 4 2 37 37 H 1.09004 * 109.46781 * 317.03396 * 5 4 2 38 38 H 0.97002 * 120.00833 * 180.02562 * 9 8 6 39 39 H 1.08996 * 109.47151 * 53.95028 * 14 4 2 40 40 H 1.09001 * 109.47650 * 173.95089 * 14 4 2 41 41 H 1.07995 * 126.00730 * 359.93332 * 16 15 14 42 42 H 1.08001 * 120.46718 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.74771 * 180.24031 * 24 23 22 44 44 H 1.08005 * 120.31379 * 179.70621 * 25 24 23 45 45 H 1.08002 * 119.55321 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6585 0.0452 2.4175 6 6 0.2035 -0.1878 2.7330 7 1 -0.3885 -0.8359 2.1038 8 6 -0.3719 0.4264 3.8251 9 7 -1.6416 0.2227 4.1009 10 14 0.6519 1.5477 4.9132 11 1 0.5740 2.9397 4.4018 12 1 0.1297 1.5009 6.3026 13 1 2.0658 1.0940 4.9002 14 6 3.4706 -0.9099 1.1264 15 7 3.7703 -1.8438 0.0380 16 6 4.1156 -1.5063 -1.2232 17 6 4.3093 -2.6460 -1.9217 18 7 4.6997 -2.7393 -3.3465 19 8 4.8764 -1.7250 -3.9972 20 8 4.8443 -3.8304 -3.8680 21 6 4.0736 -3.7300 -1.0534 22 6 4.1724 -5.1677 -1.4055 23 6 4.4373 -6.1061 -0.4101 24 6 4.5214 -7.4442 -0.7528 25 6 4.3484 -7.7994 -2.0834 26 6 4.0933 -6.8155 -3.0201 27 7 4.0133 -5.5486 -2.6661 28 7 3.7548 -3.2415 0.1269 29 1 -0.3634 0.4034 -0.9452 30 1 -0.3634 -1.0202 0.1232 31 1 -0.3634 0.6169 0.8219 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.2711 -0.3040 3.2487 37 1 1.8306 1.1102 2.2617 38 1 -2.0466 0.6550 4.8690 39 1 3.9713 0.0398 0.9383 40 1 3.8237 -1.3261 2.0699 41 1 4.2182 -0.5017 -1.6061 42 1 4.5714 -5.7940 0.6151 43 1 4.7216 -8.1948 -0.0026 44 1 4.4128 -8.8348 -2.3841 45 1 3.9586 -7.0886 -4.0563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853492604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:19 Heat of formation + Delta-G solvation = 133.499260 kcal Electronic energy + Delta-G solvation = -30454.862383 eV Core-core repulsion = 26285.575700 eV Total energy + Delta-G solvation = -4169.286683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.44597 -42.34563 -40.88913 -39.64331 -37.36006 -35.14747 -34.47535 -33.43538 -33.03148 -32.18576 -31.59851 -29.82157 -28.09882 -27.45006 -26.28202 -24.51575 -24.34736 -23.98610 -22.46019 -21.87217 -20.74944 -19.86298 -19.41790 -18.93480 -18.50171 -18.00907 -17.52221 -17.34096 -17.05019 -16.72820 -16.30268 -16.20269 -15.69400 -15.26685 -15.08831 -14.79052 -14.53525 -14.48458 -14.30385 -13.92485 -13.44936 -13.40239 -13.06538 -12.88917 -12.80460 -12.75807 -12.62244 -12.45211 -12.37910 -12.02640 -12.02343 -11.96552 -11.85636 -11.70268 -11.45401 -11.11113 -10.77892 -10.70829 -10.68718 -10.24153 -9.82984 -9.21621 -8.21065 -6.21374 -0.76570 -0.30794 0.23781 0.38238 0.55900 1.08588 1.30789 1.37173 1.39738 1.48080 2.37502 2.61622 2.86725 2.92185 3.07101 3.12041 3.42796 3.54471 3.80956 3.92164 3.96743 4.04388 4.08845 4.16939 4.19363 4.20283 4.33593 4.38747 4.59608 4.64547 4.75933 4.80695 4.84972 4.89566 5.02349 5.09980 5.14490 5.16745 5.26266 5.41530 5.47598 5.55339 5.62973 5.75498 5.85851 5.91169 6.19251 6.55903 6.82406 6.85129 7.01421 7.37097 8.94621 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002999 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.827706 B = 9334.362466 C =10415.322017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 C -0.185 4.185 4 N -0.556 5.556 5 C 0.171 3.829 6 C -0.502 4.502 7 H 0.047 0.953 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.938 3.062 11 H -0.267 1.267 12 H -0.294 1.294 13 H -0.239 1.239 14 C 0.284 3.716 15 N -0.322 5.322 16 C 0.168 3.832 17 C -0.194 4.194 18 N 0.067 4.933 19 O -0.218 6.218 20 O -0.123 6.123 21 C 0.165 3.835 22 C 0.138 3.862 23 C -0.139 4.139 24 C -0.080 4.080 25 C -0.142 4.142 26 C 0.089 3.911 27 N -0.458 5.458 28 N -0.257 5.257 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.237 0.763 42 H 0.140 0.860 43 H 0.172 0.828 44 H 0.178 0.822 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.321 -8.613 -10.281 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.023 4.023 3 C -0.243 4.243 4 N -0.282 5.282 5 C 0.045 3.955 6 C -0.540 4.540 7 H 0.065 0.935 8 C -0.190 4.190 9 N -0.593 5.593 10 Si 0.762 3.238 11 H -0.193 1.193 12 H -0.221 1.221 13 H -0.162 1.162 14 C 0.076 3.924 15 N -0.102 5.102 16 C 0.014 3.986 17 C -0.293 4.293 18 N 0.582 4.418 19 O -0.417 6.417 20 O -0.347 6.347 21 C -0.004 4.004 22 C 0.001 3.999 23 C -0.161 4.161 24 C -0.106 4.106 25 C -0.162 4.162 26 C -0.069 4.069 27 N -0.168 5.168 28 N -0.079 5.079 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.253 0.747 42 H 0.158 0.842 43 H 0.189 0.811 44 H 0.196 0.804 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 16.248 -8.329 -8.734 20.241 hybrid contribution 0.257 0.785 0.182 0.846 sum 16.505 -7.544 -8.553 20.062 Atomic orbital electron populations 1.21933 0.95160 1.00685 1.01213 1.21585 0.95925 0.93362 0.91440 1.22464 1.01818 0.96637 1.03403 1.61855 1.10503 1.51537 1.04272 1.20082 0.95677 0.92843 0.86881 1.21347 0.94806 1.27230 1.10638 0.93454 1.25767 0.95805 0.98555 0.98904 1.70051 1.13692 1.46070 1.29481 0.85862 0.80524 0.79592 0.77849 1.19264 1.22065 1.16240 1.22790 0.90798 0.90365 0.88467 1.49097 1.47477 1.04533 1.09064 1.22766 0.91011 1.00810 0.84050 1.21059 1.27624 0.95567 0.85001 1.42458 0.97463 1.00375 1.01483 1.94484 1.57641 1.26794 1.62804 1.94621 1.53132 1.14684 1.72230 1.20525 0.97020 0.93253 0.89583 1.18461 1.01983 0.88594 0.90823 1.22213 0.99389 0.94371 1.00096 1.21969 0.95503 0.95176 0.97955 1.22755 0.97366 1.02830 0.93256 1.23340 0.95046 0.86486 1.02075 1.67763 1.11157 1.21102 1.16769 1.77971 1.21914 0.89173 1.18805 0.92649 0.95842 0.91464 0.91479 0.92330 0.90426 0.90537 0.94595 0.95662 0.92800 0.86176 0.85988 0.74698 0.84193 0.81051 0.80447 0.79821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 7.75 71.98 0.56 -4.55 16 2 C 0.08 2.65 2.82 44.92 0.13 2.77 16 3 C -0.18 -4.50 8.53 71.98 0.61 -3.89 16 4 N -0.56 -18.94 4.60 -887.82 -4.09 -23.03 16 5 C 0.17 6.72 3.59 85.56 0.31 7.03 16 6 C -0.50 -25.91 7.26 25.60 0.19 -25.72 16 7 H 0.05 2.82 6.04 -2.91 -0.02 2.80 16 8 C 0.01 0.34 5.47 84.65 0.46 0.80 16 9 N -0.95 -56.91 13.96 21.45 0.30 -56.61 16 10 Si 0.94 39.80 27.44 68.60 1.88 41.68 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.24 -8.93 6.58 99.48 0.65 -8.27 16 14 C 0.28 7.01 6.02 170.81 1.03 8.04 16 15 N -0.32 -8.48 3.49 -357.71 -1.25 -9.73 16 16 C 0.17 3.98 9.51 83.47 0.79 4.78 16 17 C -0.19 -5.75 7.12 36.29 0.26 -5.49 16 18 N 0.07 2.16 4.45 -46.66 -0.21 1.96 16 19 O -0.22 -6.92 19.02 18.89 0.36 -6.56 16 20 O -0.12 -4.11 15.37 18.89 0.29 -3.82 16 21 C 0.16 5.09 6.91 42.51 0.29 5.38 16 22 C 0.14 3.94 6.58 41.98 0.28 4.22 16 23 C -0.14 -3.12 9.74 22.57 0.22 -2.90 16 24 C -0.08 -1.22 10.17 22.44 0.23 -0.99 16 25 C -0.14 -1.89 10.11 22.40 0.23 -1.67 16 26 C 0.09 1.71 11.17 84.70 0.95 2.65 16 27 N -0.46 -12.76 6.69 -184.85 -1.24 -13.99 16 28 N -0.26 -7.97 12.46 -48.18 -0.60 -8.57 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.02 1.01 7.49 -2.39 -0.02 1.00 16 31 H 0.07 3.03 5.72 -2.39 -0.01 3.01 16 32 H 0.07 1.96 6.12 -2.39 -0.01 1.95 16 33 H 0.06 1.68 5.98 -2.39 -0.01 1.67 16 34 H 0.08 1.35 6.55 -2.39 -0.02 1.34 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.38 6.85 -2.39 -0.02 1.36 16 37 H 0.03 0.94 4.73 -2.38 -0.01 0.92 16 38 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.12 2.00 6.36 -2.39 -0.02 1.99 16 40 H 0.12 2.91 7.82 -2.39 -0.02 2.89 16 41 H 0.24 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.14 3.00 8.02 -2.91 -0.02 2.97 16 43 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -74.12 369.53 2.96 -71.16 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.99 Total: 17.05 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 6.53 Total: -9.53 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -7.08 Total: -109.98 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.65 Total: -10.38 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.88 Total: 41.68 kcal Total: -74.12 2.96 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853492604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.659 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds