Wall clock time and date at job start Wed Apr 1 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30723 * 126.27613 * 2 1 4 4 N 1.28646 * 110.34296 * 180.02562 * 3 2 1 5 5 C 1.32186 * 109.56956 * 359.76842 * 4 3 2 6 6 C 1.41045 * 133.25469 * 179.57292 * 5 4 3 7 7 C 1.35642 * 119.40009 * 180.37639 * 6 5 4 8 8 C 1.41819 * 119.59725 * 0.25920 * 7 6 5 9 9 C 1.47606 * 119.97588 * 180.02562 * 8 7 6 10 10 O 1.21581 * 119.99838 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00298 * 359.97438 * 9 8 7 12 12 C 1.46493 * 120.00257 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47602 * 180.02562 * 12 11 9 14 14 H 1.09009 * 110.88639 * 51.11730 * 13 12 11 15 15 C 1.54909 * 111.00447 * 287.19974 * 13 12 11 16 16 N 1.47426 * 104.83305 * 204.91380 * 15 13 12 17 17 C 1.36933 * 125.64781 * 204.14653 * 16 15 13 18 18 H 1.08000 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00273 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00091 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47029 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47104 * 119.99812 * 21 19 17 24 24 H 1.48493 * 109.47447 * 240.00260 * 21 19 17 25 25 C 1.47023 * 108.69995 * 24.12718 * 16 15 13 26 26 C 1.54324 * 107.27322 * 358.93960 * 25 16 15 27 27 H 1.08992 * 110.87236 * 96.24499 * 26 25 16 28 28 O 1.42900 * 110.72001 * 219.44611 * 26 25 16 29 29 C 1.36486 * 120.04144 * 359.97438 * 8 7 6 30 30 N 1.35844 * 120.38298 * 359.97438 * 29 8 7 31 31 H 1.08999 * 109.47185 * 269.95536 * 1 2 3 32 32 H 1.09001 * 109.46914 * 29.95663 * 1 2 3 33 33 H 1.09002 * 109.46926 * 149.95647 * 1 2 3 34 34 H 1.08002 * 120.30326 * 0.66088 * 6 5 4 35 35 H 1.08004 * 120.20028 * 180.23258 * 7 6 5 36 36 H 0.97003 * 119.99548 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46837 * 300.00329 * 12 11 9 38 38 H 1.08997 * 109.47100 * 59.99613 * 12 11 9 39 39 H 1.09001 * 110.36330 * 323.74919 * 15 13 12 40 40 H 1.09000 * 110.36843 * 86.07143 * 15 13 12 41 41 H 0.96996 * 120.00309 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.87785 * 239.52312 * 25 16 15 43 43 H 1.09002 * 110.01342 * 118.43377 * 25 16 15 44 44 H 0.96705 * 114.00177 * 293.52640 * 28 26 25 45 45 H 1.07997 * 119.80941 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0539 0.0000 4 7 3.5175 0.7007 -0.0005 5 6 3.6013 -0.6185 0.0041 6 6 4.6878 -1.5179 -0.0019 7 6 4.4471 -2.8528 -0.0020 8 6 3.1093 -3.3234 -0.0018 9 6 2.8378 -4.7742 -0.0013 10 8 1.6910 -5.1781 -0.0006 11 7 3.8611 -5.6514 -0.0018 12 6 3.5916 -7.0913 -0.0019 13 6 4.9156 -7.8580 -0.0018 14 1 5.5722 -7.4996 0.7912 15 6 5.6107 -7.7661 -1.3831 16 7 6.4681 -8.9632 -1.4546 17 6 7.5894 -9.0966 -2.2291 18 1 7.9113 -8.2801 -2.8584 19 6 8.3124 -10.2814 -2.2053 20 7 7.9199 -11.2766 -1.4388 21 14 9.8418 -10.4637 -3.2623 22 1 10.0671 -9.2108 -4.0271 23 1 11.0156 -10.7301 -2.3928 24 1 9.6587 -11.5946 -4.2070 25 6 5.9200 -9.9899 -0.5562 26 6 4.6738 -9.3854 0.1243 27 1 3.7646 -9.6766 -0.4014 28 8 4.6085 -9.7753 1.4975 29 6 2.0727 -2.4355 -0.0008 30 7 2.3132 -1.0985 0.0004 31 1 -0.3633 -0.0008 1.0276 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.7022 -1.1472 -0.0017 35 1 5.2694 -3.5531 -0.0028 36 1 4.7760 -5.3291 -0.0020 37 1 3.0199 -7.3540 0.8882 38 1 3.0195 -7.3538 -0.8917 39 1 4.8697 -7.7820 -2.1824 40 1 6.2160 -6.8617 -1.4438 41 1 8.4253 -12.1043 -1.4219 42 1 6.6610 -10.2570 0.1972 43 1 5.6379 -10.8740 -1.1281 44 1 4.4587 -10.7212 1.6312 45 1 1.0553 -2.7979 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958199241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:38 Heat of formation + Delta-G solvation = 53.375574 kcal Electronic energy + Delta-G solvation = -29245.683344 eV Core-core repulsion = 25072.922238 eV Total energy + Delta-G solvation = -4172.761106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.01273 -40.36562 -38.55410 -37.92063 -35.40188 -35.00831 -34.67114 -32.67730 -32.08453 -31.22712 -29.80155 -27.89015 -27.72494 -26.09753 -24.92124 -24.01106 -23.36190 -22.09180 -21.22562 -20.40402 -20.07759 -18.72004 -17.75446 -17.52373 -17.14555 -17.04639 -16.65820 -16.05368 -15.59618 -15.35479 -15.17489 -14.81178 -14.39012 -14.15252 -13.88093 -13.80084 -13.71442 -13.38861 -13.16639 -12.78764 -12.74767 -12.57189 -12.46416 -12.14598 -12.06760 -11.58973 -11.57979 -11.32639 -11.08694 -10.97032 -10.90114 -10.68673 -10.46255 -10.10683 -10.01499 -9.92774 -9.91248 -9.31989 -9.22347 -8.74263 -8.54023 -6.99201 -5.83869 -3.18773 -0.04637 0.42046 1.67453 2.00757 2.53655 2.85759 3.09979 3.32407 3.38088 3.40530 3.53172 3.90088 4.01282 4.13446 4.20101 4.26087 4.36560 4.62667 4.74249 4.79266 4.92571 4.93776 5.04842 5.18556 5.28711 5.32313 5.37617 5.41340 5.49594 5.53995 5.56326 5.73230 5.77080 5.86438 5.92185 6.07953 6.15279 6.25927 6.29729 6.40673 6.69382 7.20950 7.30151 7.41119 7.66849 7.86028 8.08425 8.09415 8.11042 9.07515 9.68119 10.31478 11.27748 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002155 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.423296 B =12987.936239 C =14232.238565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.149 3.851 3 N -0.248 5.248 4 N -0.286 5.286 5 C 0.200 3.800 6 C -0.076 4.076 7 C -0.069 4.069 8 C -0.149 4.149 9 C 0.569 3.431 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.133 3.867 13 C -0.109 4.109 14 H 0.091 0.909 15 C 0.141 3.859 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.151 3.849 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.567 6.567 29 C 0.140 3.860 30 N -0.396 5.396 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.043 0.957 41 H 0.253 0.747 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.377 0.623 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 15.402 4.858 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 N -0.088 5.088 4 N -0.130 5.130 5 C -0.050 4.050 6 C -0.097 4.097 7 C -0.094 4.094 8 C -0.156 4.156 9 C 0.354 3.646 10 O -0.416 6.416 11 N -0.361 5.361 12 C 0.010 3.990 13 C -0.129 4.129 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.026 3.974 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.372 6.372 29 C 0.014 3.986 30 N -0.076 5.076 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.183 0.817 35 H 0.172 0.828 36 H 0.239 0.761 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.224 0.776 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.436 17.225 4.890 22.386 hybrid contribution 0.948 -2.035 -0.666 2.342 sum -12.488 15.189 4.224 20.112 Atomic orbital electron populations 1.20285 0.82666 1.05089 1.04501 1.25074 0.97138 0.80570 1.08464 1.74208 0.96590 1.23330 1.14628 1.74935 1.10821 1.06018 1.21233 1.22504 0.84913 0.92784 1.04761 1.20214 0.97496 0.90580 1.01448 1.21273 0.95830 0.95708 0.96550 1.19548 0.93239 0.94334 1.08505 1.17561 0.85366 0.84571 0.77118 1.90816 1.20766 1.79672 1.50330 1.45900 1.09197 1.07244 1.73780 1.21483 0.97521 0.77344 1.02700 1.22632 0.95361 0.94556 1.00343 0.89085 1.21634 0.92991 0.91723 0.92206 1.44308 1.28078 1.10490 1.50063 1.19099 0.99894 0.99206 1.17746 0.90168 1.24827 0.99468 0.96240 0.99836 1.69940 1.40403 1.04771 1.41780 0.86019 0.82498 0.77610 0.79459 1.20431 1.21661 1.21678 1.21826 0.91031 0.91258 0.93270 1.23113 0.98984 0.93462 0.82138 0.92481 1.86414 1.95919 1.29512 1.25344 1.21700 1.02074 0.79316 0.95525 1.43703 1.09200 1.06794 1.47922 0.89192 0.88112 0.89974 0.81691 0.82821 0.76094 0.90719 0.90869 0.95861 0.93907 0.93660 0.92363 0.93598 0.77603 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.40 36.01 0.37 0.04 16 2 C 0.15 1.46 8.14 -154.11 -1.25 0.21 16 3 N -0.25 -3.18 12.18 32.97 0.40 -2.78 16 4 N -0.29 -3.85 12.29 31.19 0.38 -3.46 16 5 C 0.20 2.22 7.92 -155.95 -1.23 0.98 16 6 C -0.08 -0.62 10.09 -39.45 -0.40 -1.02 16 7 C -0.07 -0.50 9.53 -39.14 -0.37 -0.88 16 8 C -0.15 -1.33 5.84 -105.34 -0.61 -1.94 16 9 C 0.57 6.29 7.76 -12.44 -0.10 6.20 16 10 O -0.54 -7.55 16.27 5.29 0.09 -7.46 16 11 N -0.71 -7.49 5.45 -61.33 -0.33 -7.82 16 12 C 0.13 1.69 5.13 -4.05 -0.02 1.67 16 13 C -0.11 -1.67 2.77 -88.48 -0.25 -1.92 16 14 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 15 C 0.14 2.54 6.65 -2.53 -0.02 2.52 16 16 N -0.60 -14.27 3.39 -170.07 -0.58 -14.84 16 17 C -0.23 -6.10 10.28 -15.06 -0.15 -6.25 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -25.94 10.31 55.49 0.57 -25.36 16 21 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.15 3.40 5.15 -3.06 -0.02 3.39 16 26 C 0.08 1.42 3.80 -24.90 -0.09 1.33 16 27 H 0.06 0.90 8.04 -51.93 -0.42 0.49 16 28 O -0.57 -9.07 13.39 -35.23 -0.47 -9.54 16 29 C 0.14 1.20 10.45 -16.41 -0.17 1.03 16 30 N -0.40 -3.91 2.94 -59.37 -0.17 -4.09 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.15 0.74 6.44 -52.48 -0.34 0.40 16 36 H 0.40 3.41 6.50 -40.82 -0.27 3.15 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 39 H 0.02 0.42 7.91 -51.93 -0.41 0.01 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.06 1.49 7.29 -51.93 -0.38 1.11 16 43 H 0.05 1.14 7.51 -51.93 -0.39 0.75 16 44 H 0.38 4.63 9.12 45.56 0.42 5.05 16 45 H 0.19 1.28 7.56 -52.49 -0.40 0.88 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -35.31 377.87 -8.96 -44.26 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.10 Total: 4.10 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -4.41 Total: 5.07 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.27 Total: -58.37 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.39 Total: -17.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.31 -8.96 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958199241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.637 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds