Wall clock time and date at job start Wed Apr 1 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30723 * 126.27613 * 2 1 4 4 N 1.28646 * 110.34296 * 180.02562 * 3 2 1 5 5 C 1.32186 * 109.56956 * 359.76842 * 4 3 2 6 6 C 1.41045 * 133.25469 * 179.57292 * 5 4 3 7 7 C 1.35642 * 119.40009 * 180.37639 * 6 5 4 8 8 C 1.41819 * 119.59725 * 0.25920 * 7 6 5 9 9 C 1.47606 * 119.97588 * 180.02562 * 8 7 6 10 10 O 1.21581 * 119.99838 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00298 * 359.97438 * 9 8 7 12 12 C 1.46493 * 120.00257 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47602 * 180.02562 * 12 11 9 14 14 H 1.09009 * 110.88639 * 51.11730 * 13 12 11 15 15 C 1.54909 * 111.00447 * 287.19974 * 13 12 11 16 16 N 1.47426 * 104.83305 * 204.91380 * 15 13 12 17 17 C 1.36933 * 125.64781 * 204.14653 * 16 15 13 18 18 H 1.08000 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00273 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00091 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47029 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47104 * 119.99812 * 21 19 17 24 24 H 1.48493 * 109.47447 * 240.00260 * 21 19 17 25 25 C 1.47023 * 108.69995 * 24.12718 * 16 15 13 26 26 C 1.54324 * 107.27322 * 358.93960 * 25 16 15 27 27 H 1.08992 * 110.87236 * 96.24499 * 26 25 16 28 28 O 1.42900 * 110.72001 * 219.44611 * 26 25 16 29 29 C 1.36486 * 120.04144 * 359.97438 * 8 7 6 30 30 N 1.35844 * 120.38298 * 359.97438 * 29 8 7 31 31 H 1.08999 * 109.47185 * 269.95536 * 1 2 3 32 32 H 1.09001 * 109.46914 * 29.95663 * 1 2 3 33 33 H 1.09002 * 109.46926 * 149.95647 * 1 2 3 34 34 H 1.08002 * 120.30326 * 0.66088 * 6 5 4 35 35 H 1.08004 * 120.20028 * 180.23258 * 7 6 5 36 36 H 0.97003 * 119.99548 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46837 * 300.00329 * 12 11 9 38 38 H 1.08997 * 109.47100 * 59.99613 * 12 11 9 39 39 H 1.09001 * 110.36330 * 323.74919 * 15 13 12 40 40 H 1.09000 * 110.36843 * 86.07143 * 15 13 12 41 41 H 0.96996 * 120.00309 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.87785 * 239.52312 * 25 16 15 43 43 H 1.09002 * 110.01342 * 118.43377 * 25 16 15 44 44 H 0.96705 * 114.00177 * 293.52640 * 28 26 25 45 45 H 1.07997 * 119.80941 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0539 0.0000 4 7 3.5175 0.7007 -0.0005 5 6 3.6013 -0.6185 0.0041 6 6 4.6878 -1.5179 -0.0019 7 6 4.4471 -2.8528 -0.0020 8 6 3.1093 -3.3234 -0.0018 9 6 2.8378 -4.7742 -0.0013 10 8 1.6910 -5.1781 -0.0006 11 7 3.8611 -5.6514 -0.0018 12 6 3.5916 -7.0913 -0.0019 13 6 4.9156 -7.8580 -0.0018 14 1 5.5722 -7.4996 0.7912 15 6 5.6107 -7.7661 -1.3831 16 7 6.4681 -8.9632 -1.4546 17 6 7.5894 -9.0966 -2.2291 18 1 7.9113 -8.2801 -2.8584 19 6 8.3124 -10.2814 -2.2053 20 7 7.9199 -11.2766 -1.4388 21 14 9.8418 -10.4637 -3.2623 22 1 10.0671 -9.2108 -4.0271 23 1 11.0156 -10.7301 -2.3928 24 1 9.6587 -11.5946 -4.2070 25 6 5.9200 -9.9899 -0.5562 26 6 4.6738 -9.3854 0.1243 27 1 3.7646 -9.6766 -0.4014 28 8 4.6085 -9.7753 1.4975 29 6 2.0727 -2.4355 -0.0008 30 7 2.3132 -1.0985 0.0004 31 1 -0.3633 -0.0008 1.0276 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.7022 -1.1472 -0.0017 35 1 5.2694 -3.5531 -0.0028 36 1 4.7760 -5.3291 -0.0020 37 1 3.0199 -7.3540 0.8882 38 1 3.0195 -7.3538 -0.8917 39 1 4.8697 -7.7820 -2.1824 40 1 6.2160 -6.8617 -1.4438 41 1 8.4253 -12.1043 -1.4219 42 1 6.6610 -10.2570 0.1972 43 1 5.6379 -10.8740 -1.1281 44 1 4.4587 -10.7212 1.6312 45 1 1.0553 -2.7979 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958199241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:37 Heat of formation + Delta-G solvation = 27.920343 kcal Electronic energy + Delta-G solvation = -29246.787165 eV Core-core repulsion = 25072.922238 eV Total energy + Delta-G solvation = -4173.864928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.75560 -41.25039 -39.87264 -38.79276 -36.62382 -36.23874 -35.51586 -34.07148 -33.08571 -31.89803 -31.26546 -29.31039 -28.50953 -27.42603 -26.16995 -24.72866 -24.63263 -22.78922 -22.35599 -21.83193 -21.33810 -19.56781 -18.88404 -18.58673 -18.21238 -17.93730 -17.89147 -17.07586 -16.87050 -16.43399 -16.01430 -15.89625 -15.70615 -15.40998 -14.86031 -14.74866 -14.51871 -14.37897 -14.15496 -13.98443 -13.73256 -13.54795 -13.49131 -13.21823 -13.15650 -13.08406 -12.77799 -12.75271 -12.40139 -12.24557 -12.20294 -11.89275 -11.76888 -11.73352 -11.53301 -11.21517 -10.79365 -10.78486 -10.72552 -10.15624 -9.23808 -8.91253 -7.85380 -5.21114 -0.72709 -0.24838 0.97252 1.25722 1.47881 1.48323 1.58203 1.73904 2.00293 2.36381 2.49003 2.87428 3.23704 3.31267 3.33023 3.36873 3.46792 3.56503 3.62417 3.64705 3.74745 3.92212 4.13387 4.19976 4.32227 4.44114 4.49535 4.59960 4.64089 4.68669 4.73581 4.80384 4.82522 4.89200 4.92876 4.98964 5.00134 5.16478 5.24966 5.39088 5.45193 5.51528 5.63444 5.74381 6.18519 6.38936 6.90895 7.02781 7.09035 7.30290 7.76442 8.38955 9.24859 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002155 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.423296 B =12987.936239 C =14232.238565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.156 3.844 3 N -0.289 5.289 4 N -0.330 5.330 5 C 0.190 3.810 6 C -0.085 4.085 7 C -0.053 4.053 8 C -0.154 4.154 9 C 0.575 3.425 10 O -0.567 6.567 11 N -0.703 5.703 12 C 0.147 3.853 13 C -0.090 4.090 14 H 0.090 0.910 15 C 0.137 3.863 16 N -0.626 5.626 17 C -0.237 4.237 18 H 0.089 0.911 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.296 1.296 25 C 0.160 3.840 26 C 0.096 3.904 27 H 0.076 0.924 28 O -0.570 6.570 29 C 0.145 3.855 30 N -0.401 5.401 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.186 0.814 35 H 0.182 0.818 36 H 0.415 0.585 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.246 0.754 42 H 0.018 0.982 43 H 0.010 0.990 44 H 0.393 0.607 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.092 16.310 4.791 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 N -0.127 5.127 4 N -0.173 5.173 5 C -0.060 4.060 6 C -0.106 4.106 7 C -0.078 4.078 8 C -0.161 4.161 9 C 0.362 3.638 10 O -0.448 6.448 11 N -0.355 5.355 12 C 0.023 3.977 13 C -0.110 4.110 14 H 0.109 0.891 15 C 0.012 3.988 16 N -0.353 5.353 17 C -0.366 4.366 18 H 0.107 0.893 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.223 1.223 25 C 0.034 3.966 26 C 0.036 3.964 27 H 0.094 0.906 28 O -0.377 6.377 29 C 0.019 3.981 30 N -0.081 5.081 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.203 0.797 35 H 0.200 0.800 36 H 0.253 0.747 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.036 0.964 43 H 0.029 0.971 44 H 0.242 0.758 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.289 18.192 4.825 23.631 hybrid contribution 1.149 -2.343 -0.634 2.685 sum -13.141 15.849 4.191 21.011 Atomic orbital electron populations 1.20552 0.79552 1.06493 1.05960 1.25896 0.98648 0.79911 1.06233 1.74112 0.96937 1.24997 1.16656 1.74817 1.11520 1.07566 1.23422 1.22958 0.86191 0.92616 1.04266 1.20501 0.97726 0.90486 1.01913 1.21528 0.95865 0.95741 0.94648 1.19422 0.94143 0.93097 1.09440 1.17689 0.84781 0.85168 0.76208 1.90810 1.21965 1.80260 1.51758 1.45742 1.09911 1.06311 1.73529 1.21190 0.95536 0.78216 1.02772 1.22430 0.96423 0.93579 0.98544 0.89126 1.21852 0.92741 0.90278 0.93914 1.44619 1.28207 1.12670 1.49772 1.19518 1.00472 0.99145 1.17420 0.89339 1.25639 1.02532 0.96395 1.01569 1.70157 1.41478 1.04985 1.43523 0.85042 0.78974 0.77753 0.77770 1.18693 1.22211 1.22284 1.21591 0.92308 0.90748 0.91985 1.22891 0.96828 0.94356 0.82355 0.90593 1.86385 1.95741 1.31192 1.24367 1.21974 1.02965 0.78722 0.94393 1.43824 1.08932 1.07231 1.48118 0.87553 0.87279 0.87947 0.79714 0.80033 0.74697 0.90650 0.90900 0.95054 0.92051 0.94499 0.96371 0.97148 0.75785 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.40 71.24 0.74 0.20 16 2 C 0.16 2.90 8.14 137.67 1.12 4.02 16 3 N -0.29 -7.47 12.18 -49.61 -0.60 -8.08 16 4 N -0.33 -8.99 12.29 -55.23 -0.68 -9.67 16 5 C 0.19 4.06 7.92 134.12 1.06 5.12 16 6 C -0.09 -1.22 10.09 22.36 0.23 -0.99 16 7 C -0.05 -0.61 9.53 22.55 0.21 -0.40 16 8 C -0.15 -2.30 5.84 -20.33 -0.12 -2.42 16 9 C 0.57 10.97 7.76 86.72 0.67 11.64 16 10 O -0.57 -14.43 16.27 -3.97 -0.06 -14.50 16 11 N -0.70 -12.37 5.45 -466.22 -2.54 -14.91 16 12 C 0.15 3.27 5.13 86.38 0.44 3.72 16 13 C -0.09 -2.53 2.77 -9.40 -0.03 -2.55 16 14 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 15 C 0.14 4.62 6.65 86.85 0.58 5.20 16 16 N -0.63 -29.36 3.39 -691.98 -2.35 -31.71 16 17 C -0.24 -12.39 10.28 84.03 0.86 -11.52 16 18 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 20 N -0.95 -55.23 10.31 21.65 0.22 -55.01 16 21 Si 0.98 43.98 29.55 68.60 2.03 46.01 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 25 C 0.16 7.28 5.15 86.73 0.45 7.73 16 26 C 0.10 3.15 3.80 31.78 0.12 3.27 16 27 H 0.08 2.24 8.04 -2.39 -0.02 2.22 16 28 O -0.57 -17.30 13.39 -148.98 -1.99 -19.29 16 29 C 0.14 2.16 10.45 83.66 0.87 3.03 16 30 N -0.40 -7.34 2.94 -341.75 -1.00 -8.35 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.18 0.98 6.44 -2.91 -0.02 0.96 16 36 H 0.41 5.35 6.50 -92.71 -0.60 4.74 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.69 7.96 -2.39 -0.02 1.67 16 39 H 0.03 1.04 7.91 -2.39 -0.02 1.02 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.02 0.96 7.29 -2.39 -0.02 0.94 16 43 H 0.01 0.53 7.51 -2.39 -0.02 0.52 16 44 H 0.39 9.17 9.12 -74.05 -0.68 8.49 16 45 H 0.20 2.23 7.56 -2.91 -0.02 2.21 16 Total: -1.00 -79.16 377.87 0.47 -78.69 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.22 Total: 14.06 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 7.68 Total: 22.76 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -6.96 Total: -127.73 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -2.06 Total: -33.79 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.16 0.47 -78.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958199241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.607 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds