Wall clock time and date at job start Wed Apr 1 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47569 * 2 1 4 4 O 1.34257 * 126.52337 * 270.02324 * 3 2 1 5 5 C 1.34053 * 108.22573 * 179.97438 * 4 3 2 6 6 N 1.29943 * 109.24383 * 359.97438 * 5 4 3 7 7 C 1.36065 * 108.47374 * 359.73974 * 6 5 4 8 8 C 1.47422 * 126.44986 * 180.30359 * 7 6 5 9 9 O 1.21608 * 120.00258 * 180.13842 * 8 7 6 10 10 N 1.34779 * 119.99586 * 0.13981 * 8 7 6 11 11 C 1.46503 * 119.99838 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47422 * 179.97438 * 11 10 8 13 13 C 1.40075 * 126.12610 * 259.68824 * 12 11 10 14 14 N 1.31018 * 108.25481 * 179.97438 * 13 12 11 15 15 N 1.39750 * 108.17458 * 0.52936 * 14 13 12 16 16 C 1.34644 * 126.12558 * 79.99334 * 12 11 10 17 17 C 1.51044 * 127.90839 * 359.45023 * 16 12 11 18 18 N 1.47500 * 106.99832 * 169.56887 * 17 16 12 19 19 C 1.36939 * 121.01149 * 222.97461 * 18 17 16 20 20 H 1.07997 * 119.99736 * 155.89419 * 19 18 17 21 21 C 1.38811 * 119.99807 * 335.89712 * 19 18 17 22 22 N 1.31621 * 120.00099 * 344.44210 * 21 19 18 23 23 Si 1.86803 * 119.99757 * 164.44424 * 21 19 18 24 24 H 1.48496 * 109.47034 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46737 * 119.99672 * 23 21 19 26 26 H 1.48494 * 109.47401 * 239.99510 * 23 21 19 27 27 C 1.47082 * 117.97693 * 42.96959 * 18 17 16 28 28 C 1.46550 * 127.32229 * 179.23622 * 15 14 13 29 29 H 1.09005 * 109.46596 * 59.99852 * 1 2 3 30 30 H 1.08992 * 109.47716 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47299 * 300.00221 * 1 2 3 32 32 H 1.09004 * 109.47158 * 239.99315 * 2 1 3 33 33 H 1.09005 * 109.46596 * 120.00148 * 2 1 3 34 34 H 1.07994 * 125.38175 * 180.02562 * 5 4 3 35 35 H 0.96993 * 120.00466 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.46664 * 299.99882 * 11 10 8 37 37 H 1.09001 * 109.47600 * 59.99258 * 11 10 8 38 38 H 1.07999 * 125.87103 * 0.08840 * 13 12 11 39 39 H 1.08999 * 109.94553 * 288.93801 * 17 16 12 40 40 H 1.08999 * 109.94849 * 50.19491 * 17 16 12 41 41 H 0.97000 * 120.00021 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.51618 * 176.51813 * 27 18 17 43 43 H 1.09005 * 109.50922 * 56.37932 * 27 18 17 44 44 H 1.09003 * 109.50677 * 281.39423 * 28 15 14 45 45 H 1.08995 * 109.51165 * 41.53367 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2984 2.1742 -1.0789 5 6 2.7224 3.3742 -0.6580 6 7 2.7292 3.3946 0.6412 7 6 2.2960 2.1867 1.0936 8 6 2.1438 1.7826 2.5032 9 8 1.7469 0.6660 2.7762 10 7 2.4447 2.6507 3.4893 11 6 2.2941 2.2489 4.8900 12 6 2.6936 3.3925 5.7864 13 6 3.9208 3.5345 6.4467 14 7 3.8933 4.6534 7.1279 15 7 2.6455 5.2519 6.9329 16 6 1.9328 4.4580 6.1007 17 6 0.5299 4.7667 5.6336 18 7 0.0446 5.8987 6.4452 19 6 -1.2278 5.9096 6.9513 20 1 -1.4559 6.5007 7.8259 21 6 -2.2242 5.1609 6.3403 22 7 -2.0428 4.6920 5.1239 23 14 -3.8228 4.8190 7.2443 24 1 -3.7777 5.4528 8.5864 25 1 -4.9590 5.3802 6.4702 26 1 -4.0026 3.3526 7.3946 27 6 0.9688 7.0154 6.6943 28 6 2.1625 6.5083 7.5123 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5140 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.0117 4.1948 -1.2977 35 1 2.7617 3.5411 3.2716 36 1 1.2547 1.9825 5.0818 37 1 2.9328 1.3891 5.0922 38 1 4.7481 2.8419 6.4006 39 1 0.5414 5.0430 4.5793 40 1 -0.1118 3.8987 5.7847 41 1 -2.7392 4.1691 4.6967 42 1 0.4529 7.7979 7.2509 43 1 1.3207 7.4158 5.7435 44 1 1.8534 6.3383 8.5437 45 1 2.9601 7.2507 7.4883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069854872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:42 Heat of formation + Delta-G solvation = 87.797553 kcal Electronic energy + Delta-G solvation = -30402.546473 eV Core-core repulsion = 26231.278016 eV Total energy + Delta-G solvation = -4171.268457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.49477 -40.95990 -39.13638 -36.29191 -35.02797 -34.78538 -34.05811 -32.94676 -31.26762 -30.20339 -29.52931 -28.65006 -26.19964 -25.27240 -24.08485 -23.60131 -23.27539 -21.78174 -21.43038 -20.31349 -20.07442 -18.53759 -17.99420 -16.89208 -16.70625 -16.33111 -16.03574 -15.64358 -15.24564 -14.96846 -14.81407 -14.61834 -14.48065 -13.87585 -13.66521 -13.60102 -13.43888 -13.22742 -13.15333 -12.71510 -12.61422 -12.43847 -11.82889 -11.68935 -11.61335 -11.38996 -11.31209 -11.26338 -10.97854 -10.87307 -10.76799 -10.70952 -10.17972 -10.16428 -10.07876 -9.92727 -9.05162 -8.89630 -8.66484 -8.52927 -7.91428 -7.06693 -5.99968 -3.42848 1.08122 2.04988 2.43060 2.49227 2.94982 3.04153 3.29282 3.37546 3.39042 3.46983 3.67856 4.05967 4.32456 4.50598 4.84464 4.97231 5.00788 5.08208 5.11824 5.21060 5.22584 5.39843 5.46693 5.53958 5.57488 5.63197 5.70195 5.73641 5.74532 5.87851 5.97506 6.04011 6.15058 6.17109 6.24049 6.39378 6.44437 6.56175 6.71581 6.94248 7.10817 7.17590 7.36437 7.58947 7.62724 7.84908 8.10599 8.25795 8.41091 8.93247 9.55769 10.08630 11.10793 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009486 B = 0.003614 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.108211 B = 7745.695667 C = 9372.688776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.040 3.960 4 O -0.202 6.202 5 C 0.170 3.830 6 N -0.460 5.460 7 C -0.068 4.068 8 C 0.600 3.400 9 O -0.540 6.540 10 N -0.699 5.699 11 C 0.210 3.790 12 C -0.289 4.289 13 C 0.058 3.942 14 N -0.318 5.318 15 N -0.358 5.358 16 C 0.122 3.878 17 C 0.231 3.769 18 N -0.597 5.597 19 C -0.264 4.264 20 H 0.074 0.926 21 C 0.008 3.992 22 N -0.902 5.902 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.286 1.286 27 C 0.129 3.871 28 C 0.114 3.886 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.253 0.747 35 H 0.408 0.592 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.176 0.824 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.258 0.742 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 -4.461 -10.150 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.016 4.016 4 O -0.088 6.088 5 C -0.059 4.059 6 N -0.188 5.188 7 C -0.188 4.188 8 C 0.385 3.615 9 O -0.419 6.419 10 N -0.349 5.349 11 C 0.087 3.913 12 C -0.302 4.302 13 C -0.129 4.129 14 N -0.138 5.138 15 N -0.139 5.139 16 C -0.010 4.010 17 C 0.104 3.896 18 N -0.319 5.319 19 C -0.392 4.392 20 H 0.092 0.908 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.000 4.000 28 C -0.010 4.010 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.269 0.731 35 H 0.243 0.757 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.193 0.807 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.096 -3.881 -8.770 13.925 hybrid contribution -1.108 -0.441 -0.697 1.381 sum 8.988 -4.322 -9.467 13.751 Atomic orbital electron populations 1.21718 0.92962 1.02851 1.02782 1.20368 0.97207 0.85369 1.05167 1.23805 0.98816 0.95641 0.83351 1.84357 1.63867 1.24194 1.36379 1.27981 0.99482 0.87098 0.91304 1.70766 1.16850 1.21140 1.10091 1.21583 1.10124 0.91277 0.95841 1.16677 0.77722 0.84647 0.82482 1.90763 1.47485 1.20368 1.83243 1.46020 1.65798 1.17106 1.05947 1.19368 1.01552 0.93408 0.77005 1.19397 0.96805 1.01305 1.12660 1.23667 0.97523 0.95381 0.96355 1.77166 1.01065 1.10429 1.25148 1.48490 1.09869 1.18967 1.36564 1.22576 0.97153 0.90464 0.90790 1.19926 0.83093 0.92993 0.93595 1.44213 1.10970 1.15576 1.61159 1.19204 0.84238 1.28376 1.07393 0.90820 1.25040 0.97889 1.00962 0.95220 1.69963 1.34375 1.38741 1.11473 0.86146 0.82934 0.78061 0.79153 1.20166 1.21490 1.21246 1.21291 0.89657 0.91721 0.97304 1.22559 0.97933 0.81765 0.98711 0.92725 0.91136 0.91328 0.90036 0.86463 0.73093 0.75668 0.90572 0.91071 0.80743 0.92521 0.87310 0.93139 0.89745 0.94564 0.90579 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.04 -0.47 5.92 -27.89 -0.17 -0.63 16 3 C 0.04 0.52 6.69 -35.08 -0.23 0.28 16 4 O -0.20 -2.26 10.73 6.50 0.07 -2.19 16 5 C 0.17 1.72 13.19 51.96 0.69 2.41 16 6 N -0.46 -6.38 11.06 -11.48 -0.13 -6.51 16 7 C -0.07 -1.02 6.99 -83.02 -0.58 -1.60 16 8 C 0.60 9.96 7.81 -12.52 -0.10 9.87 16 9 O -0.54 -9.67 14.81 5.27 0.08 -9.59 16 10 N -0.70 -11.37 5.55 -62.56 -0.35 -11.72 16 11 C 0.21 3.48 5.95 -5.19 -0.03 3.45 16 12 C -0.29 -5.17 5.46 -105.21 -0.57 -5.74 16 13 C 0.06 0.96 11.97 -17.21 -0.21 0.76 16 14 N -0.32 -6.00 12.61 30.70 0.39 -5.61 16 15 N -0.36 -7.01 4.03 -56.89 -0.23 -7.24 16 16 C 0.12 2.47 6.71 -82.16 -0.55 1.92 16 17 C 0.23 5.31 5.11 -4.48 -0.02 5.28 16 18 N -0.60 -14.07 3.01 -172.92 -0.52 -14.59 16 19 C -0.26 -6.79 9.66 -15.06 -0.15 -6.93 16 20 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 21 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 22 N -0.90 -24.77 11.07 55.49 0.61 -24.15 16 23 Si 0.91 20.89 29.58 -169.99 -5.03 15.86 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.13 2.45 6.50 -3.55 -0.02 2.42 16 28 C 0.11 1.98 7.45 -3.84 -0.03 1.95 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.37 6.50 -51.93 -0.34 1.03 16 34 H 0.25 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.41 6.63 8.19 -40.82 -0.33 6.30 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.11 2.80 6.46 -51.93 -0.34 2.46 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -31.90 380.91 -7.10 -39.00 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.04 Total: 8.61 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -1.69 Total: 12.39 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.22 Total: -69.82 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.15 Total: -11.78 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.90 -7.10 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069854872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.799 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds