Wall clock time and date at job start Wed Apr 1 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47569 * 2 1 4 4 O 1.34257 * 126.52337 * 270.02324 * 3 2 1 5 5 C 1.34053 * 108.22573 * 179.97438 * 4 3 2 6 6 N 1.29943 * 109.24383 * 359.97438 * 5 4 3 7 7 C 1.36065 * 108.47374 * 359.73974 * 6 5 4 8 8 C 1.47422 * 126.44986 * 180.30359 * 7 6 5 9 9 O 1.21608 * 120.00258 * 180.13842 * 8 7 6 10 10 N 1.34779 * 119.99586 * 0.13981 * 8 7 6 11 11 C 1.46503 * 119.99838 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47422 * 179.97438 * 11 10 8 13 13 C 1.40075 * 126.12610 * 259.68824 * 12 11 10 14 14 N 1.31018 * 108.25481 * 179.97438 * 13 12 11 15 15 N 1.39750 * 108.17458 * 0.52936 * 14 13 12 16 16 C 1.34644 * 126.12558 * 79.99334 * 12 11 10 17 17 C 1.51044 * 127.90839 * 359.45023 * 16 12 11 18 18 N 1.47500 * 106.99832 * 169.56887 * 17 16 12 19 19 C 1.36939 * 121.01149 * 222.97461 * 18 17 16 20 20 H 1.07997 * 119.99736 * 155.89419 * 19 18 17 21 21 C 1.38811 * 119.99807 * 335.89712 * 19 18 17 22 22 N 1.31621 * 120.00099 * 344.44210 * 21 19 18 23 23 Si 1.86803 * 119.99757 * 164.44424 * 21 19 18 24 24 H 1.48496 * 109.47034 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46737 * 119.99672 * 23 21 19 26 26 H 1.48494 * 109.47401 * 239.99510 * 23 21 19 27 27 C 1.47082 * 117.97693 * 42.96959 * 18 17 16 28 28 C 1.46550 * 127.32229 * 179.23622 * 15 14 13 29 29 H 1.09005 * 109.46596 * 59.99852 * 1 2 3 30 30 H 1.08992 * 109.47716 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47299 * 300.00221 * 1 2 3 32 32 H 1.09004 * 109.47158 * 239.99315 * 2 1 3 33 33 H 1.09005 * 109.46596 * 120.00148 * 2 1 3 34 34 H 1.07994 * 125.38175 * 180.02562 * 5 4 3 35 35 H 0.96993 * 120.00466 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.46664 * 299.99882 * 11 10 8 37 37 H 1.09001 * 109.47600 * 59.99258 * 11 10 8 38 38 H 1.07999 * 125.87103 * 0.08840 * 13 12 11 39 39 H 1.08999 * 109.94553 * 288.93801 * 17 16 12 40 40 H 1.08999 * 109.94849 * 50.19491 * 17 16 12 41 41 H 0.97000 * 120.00021 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.51618 * 176.51813 * 27 18 17 43 43 H 1.09005 * 109.50922 * 56.37932 * 27 18 17 44 44 H 1.09003 * 109.50677 * 281.39423 * 28 15 14 45 45 H 1.08995 * 109.51165 * 41.53367 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2984 2.1742 -1.0789 5 6 2.7224 3.3742 -0.6580 6 7 2.7292 3.3946 0.6412 7 6 2.2960 2.1867 1.0936 8 6 2.1438 1.7826 2.5032 9 8 1.7469 0.6660 2.7762 10 7 2.4447 2.6507 3.4893 11 6 2.2941 2.2489 4.8900 12 6 2.6936 3.3925 5.7864 13 6 3.9208 3.5345 6.4467 14 7 3.8933 4.6534 7.1279 15 7 2.6455 5.2519 6.9329 16 6 1.9328 4.4580 6.1007 17 6 0.5299 4.7667 5.6336 18 7 0.0446 5.8987 6.4452 19 6 -1.2278 5.9096 6.9513 20 1 -1.4559 6.5007 7.8259 21 6 -2.2242 5.1609 6.3403 22 7 -2.0428 4.6920 5.1239 23 14 -3.8228 4.8190 7.2443 24 1 -3.7777 5.4528 8.5864 25 1 -4.9590 5.3802 6.4702 26 1 -4.0026 3.3526 7.3946 27 6 0.9688 7.0154 6.6943 28 6 2.1625 6.5083 7.5123 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5140 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.0117 4.1948 -1.2977 35 1 2.7617 3.5411 3.2716 36 1 1.2547 1.9825 5.0818 37 1 2.9328 1.3891 5.0922 38 1 4.7481 2.8419 6.4006 39 1 0.5414 5.0430 4.5793 40 1 -0.1118 3.8987 5.7847 41 1 -2.7392 4.1691 4.6967 42 1 0.4529 7.7979 7.2509 43 1 1.3207 7.4158 5.7435 44 1 1.8534 6.3383 8.5437 45 1 2.9601 7.2507 7.4883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069854872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:41 Heat of formation + Delta-G solvation = 63.990934 kcal Electronic energy + Delta-G solvation = -30403.578805 eV Core-core repulsion = 26231.278016 eV Total energy + Delta-G solvation = -4172.300790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.42995 -42.44538 -40.43322 -37.98832 -36.28994 -35.82956 -35.03802 -34.61139 -32.92493 -31.84841 -30.71758 -29.94053 -27.89393 -26.73633 -25.33717 -24.93852 -24.42077 -23.33810 -22.44976 -21.63392 -21.38701 -20.04418 -19.21302 -18.55990 -17.84162 -17.69034 -17.28557 -16.92425 -16.71950 -16.41239 -16.04382 -15.87483 -15.58894 -15.48477 -15.28357 -15.00756 -14.75546 -14.62761 -14.40123 -14.11100 -13.95081 -13.55096 -13.36963 -13.11907 -12.98743 -12.77120 -12.68136 -12.64590 -12.39184 -12.33731 -12.19187 -12.05027 -11.89698 -11.76337 -11.64105 -11.19837 -10.80338 -10.19750 -10.08249 -9.85077 -9.42599 -8.97484 -7.99736 -5.44247 0.06892 0.90563 1.08606 1.44167 1.47352 1.51092 1.56070 1.60212 1.68295 2.25792 2.43324 2.45884 3.16333 3.19082 3.41052 3.58266 3.58446 3.79639 3.83005 4.09261 4.13351 4.17461 4.22318 4.25816 4.31759 4.36171 4.44826 4.56856 4.71103 4.76090 4.80636 4.85309 4.90528 4.93938 4.99636 5.12493 5.20400 5.21641 5.26889 5.34145 5.40905 5.57000 5.73459 6.07034 6.18450 6.33854 6.62784 6.78122 6.96904 7.11746 7.63564 8.15198 9.09638 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009486 B = 0.003614 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.108211 B = 7745.695667 C = 9372.688776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C 0.046 3.954 4 O -0.196 6.196 5 C 0.194 3.806 6 N -0.499 5.499 7 C -0.102 4.102 8 C 0.594 3.406 9 O -0.561 6.561 10 N -0.698 5.698 11 C 0.217 3.783 12 C -0.277 4.277 13 C 0.068 3.932 14 N -0.325 5.325 15 N -0.366 5.366 16 C 0.097 3.903 17 C 0.252 3.748 18 N -0.616 5.616 19 C -0.268 4.268 20 H 0.081 0.919 21 C -0.043 4.043 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.294 1.294 27 C 0.128 3.872 28 C 0.117 3.883 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.304 0.696 35 H 0.408 0.592 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.216 0.784 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.252 0.748 42 H 0.101 0.899 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.337 -4.208 -10.651 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.012 4.012 4 O -0.083 6.083 5 C -0.035 4.035 6 N -0.227 5.227 7 C -0.220 4.220 8 C 0.381 3.619 9 O -0.441 6.441 10 N -0.347 5.347 11 C 0.093 3.907 12 C -0.290 4.290 13 C -0.118 4.118 14 N -0.145 5.145 15 N -0.148 5.148 16 C -0.035 4.035 17 C 0.125 3.875 18 N -0.339 5.339 19 C -0.397 4.397 20 H 0.099 0.901 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.217 1.217 26 H -0.221 1.221 27 C 0.001 3.999 28 C -0.005 4.005 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.319 0.681 35 H 0.243 0.757 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.721 -3.589 -9.237 15.348 hybrid contribution -1.533 -0.472 -0.611 1.716 sum 10.188 -4.062 -9.847 14.740 Atomic orbital electron populations 1.21688 0.93003 1.03780 1.01454 1.20439 0.97015 0.84446 1.06103 1.24104 0.97649 0.96263 0.83141 1.84398 1.63794 1.24497 1.35591 1.29145 0.96256 0.87274 0.90792 1.70726 1.18822 1.21099 1.12069 1.21433 1.12624 0.92660 0.95310 1.16994 0.77107 0.84355 0.83432 1.90735 1.48398 1.21145 1.83842 1.45949 1.65895 1.17095 1.05780 1.19268 1.00397 0.93751 0.77283 1.19544 0.96970 1.00474 1.11986 1.24254 0.97792 0.95147 0.94631 1.77156 1.00516 1.11185 1.25655 1.48688 1.10050 1.19479 1.36581 1.22200 0.96353 0.92172 0.92777 1.19300 0.84304 0.91679 0.92265 1.44450 1.11182 1.17149 1.61117 1.19557 0.85156 1.27668 1.07331 0.90103 1.25753 1.00838 1.01445 0.95867 1.70122 1.34960 1.39790 1.12876 0.85215 0.79492 0.77208 0.78588 1.18753 1.21722 1.22063 1.21458 0.89659 0.90889 0.97922 1.22557 0.98032 0.81896 0.98044 0.91792 0.89139 0.94776 0.86752 0.87780 0.68104 0.75706 0.93260 0.88985 0.76735 0.95382 0.90894 0.93908 0.88071 0.94448 0.90254 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.89 71.98 0.71 -2.25 16 2 C -0.04 -0.88 5.92 29.85 0.18 -0.70 16 3 C 0.05 1.14 6.69 25.18 0.17 1.31 16 4 O -0.20 -4.02 10.73 0.36 0.00 -4.01 16 5 C 0.19 3.51 13.19 130.52 1.72 5.24 16 6 N -0.50 -13.64 11.06 -305.14 -3.37 -17.01 16 7 C -0.10 -3.09 6.99 40.41 0.28 -2.81 16 8 C 0.59 20.59 7.81 86.66 0.68 21.27 16 9 O -0.56 -21.01 14.81 -4.06 -0.06 -21.07 16 10 N -0.70 -23.58 5.55 -470.10 -2.61 -26.19 16 11 C 0.22 7.37 5.95 85.63 0.51 7.88 16 12 C -0.28 -9.87 5.46 -20.24 -0.11 -9.98 16 13 C 0.07 2.14 11.97 85.26 1.02 3.16 16 14 N -0.33 -11.58 12.61 -56.79 -0.72 -12.30 16 15 N -0.37 -13.98 4.03 -333.91 -1.35 -15.33 16 16 C 0.10 3.97 6.71 41.31 0.28 4.25 16 17 C 0.25 12.16 5.11 85.55 0.44 12.59 16 18 N -0.62 -29.62 3.01 -700.99 -2.11 -31.73 16 19 C -0.27 -13.98 9.66 84.03 0.81 -13.17 16 20 H 0.08 4.02 7.88 -2.91 -0.02 3.99 16 21 C -0.04 -2.32 5.00 84.86 0.42 -1.89 16 22 N -0.93 -53.57 11.07 21.65 0.24 -53.33 16 23 Si 0.97 43.81 29.58 68.60 2.03 45.84 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 C 0.13 4.78 6.50 86.38 0.56 5.34 16 28 C 0.12 3.88 7.45 86.48 0.64 4.52 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.10 2.45 6.50 -2.38 -0.02 2.43 16 34 H 0.30 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.41 13.76 8.19 -92.71 -0.76 13.00 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.22 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 4.02 6.46 -2.39 -0.02 4.00 16 41 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.10 3.40 7.94 -2.39 -0.02 3.38 16 43 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -72.07 380.91 0.65 -71.42 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.28 Total: 28.97 kcal Atomic # 6 Polarization: 26.43 SS G_CDS: 8.32 Total: 34.75 kcal Atomic # 7 Polarization: -145.98 SS G_CDS: -9.91 Total: -155.89 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.07 0.65 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069854872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.413 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds