Wall clock time and date at job start Wed Apr 1 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47291 * 2 1 4 4 O 1.33646 * 125.80241 * 270.00010 * 3 2 1 5 5 C 1.34216 * 110.90761 * 179.97438 * 4 3 2 6 6 C 1.34173 * 109.12708 * 0.02562 * 5 4 3 7 7 C 1.36415 * 125.79961 * 90.00004 * 3 2 1 8 8 C 1.47382 * 127.19393 * 359.73699 * 7 3 2 9 9 O 1.21619 * 119.99977 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00534 * 179.97438 * 8 7 3 11 11 C 1.46496 * 120.00337 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.88250 * 31.12732 * 11 10 8 13 13 C 1.54912 * 111.00741 * 267.20037 * 11 10 8 14 14 N 1.47427 * 104.82995 * 204.91608 * 13 11 10 15 15 C 1.36936 * 125.64154 * 204.14703 * 14 13 11 16 16 H 1.08004 * 119.99555 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00431 * 359.97438 * 15 14 13 18 18 N 1.31615 * 119.99754 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47147 * 59.99441 * 19 17 15 21 21 H 1.48496 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46562 * 299.99436 * 19 17 15 23 23 C 1.47020 * 108.70539 * 24.12856 * 14 13 11 24 24 C 1.54331 * 107.27112 * 358.94018 * 23 14 13 25 25 H 1.08998 * 110.71429 * 219.44221 * 24 23 14 26 26 N 1.46500 * 110.86998 * 96.24051 * 24 23 14 27 27 C 1.35307 * 125.86959 * 331.10196 * 26 24 23 28 28 C 1.35355 * 106.17430 * 179.90643 * 27 26 24 29 29 N 1.33767 * 106.49732 * 0.35374 * 28 27 26 30 30 N 1.28637 * 108.88767 * 359.77442 * 29 28 27 31 31 H 1.08994 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46730 * 300.00242 * 1 2 3 33 33 H 1.08997 * 109.46974 * 59.99476 * 1 2 3 34 34 H 1.09000 * 109.47549 * 240.00170 * 2 1 3 35 35 H 1.08999 * 109.47727 * 119.99990 * 2 1 3 36 36 H 1.08002 * 125.44178 * 180.02562 * 5 4 3 37 37 H 1.08005 * 127.02639 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99435 * 0.02562 * 10 8 7 39 39 H 1.09004 * 110.36227 * 323.75302 * 13 11 10 40 40 H 1.08995 * 110.36463 * 86.07476 * 13 11 10 41 41 H 0.97001 * 120.00209 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.88243 * 239.51989 * 23 14 13 43 43 H 1.08999 * 109.87899 * 118.35595 * 23 14 13 44 44 H 1.07999 * 126.91682 * 0.02562 * 27 26 24 45 45 H 1.08006 * 126.75416 * 180.12836 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1579 -1.0839 5 6 2.7249 3.3810 -0.7389 6 6 2.7580 3.4743 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1496 1.7686 2.5158 9 8 1.7501 0.6529 2.7892 10 7 2.4572 2.6345 3.5017 11 6 2.3087 2.2325 4.9025 12 1 2.4842 1.1632 5.0206 13 6 0.9156 2.6313 5.4501 14 7 1.1030 2.7508 6.9075 15 6 0.1192 2.6243 7.8516 16 1 0.3596 2.7292 8.8993 17 6 -1.1869 2.3611 7.4621 18 7 -1.4798 2.2337 6.1853 19 14 -2.5290 2.1893 8.7501 20 1 -2.6334 3.4502 9.5274 21 1 -3.8251 1.9122 8.0804 22 1 -2.1952 1.0691 9.6661 23 6 2.5211 3.0278 7.1794 24 6 3.2513 3.0553 5.8200 25 1 4.2280 2.5776 5.8974 26 7 3.3855 4.4284 5.3274 27 6 2.5408 5.4518 5.5919 28 6 3.0403 6.5301 4.9441 29 7 4.1472 6.1173 4.3167 30 7 4.3242 4.8673 4.5637 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.0015 4.1650 -1.4283 37 1 3.0600 4.3305 1.1841 38 1 2.7761 3.5243 3.2836 39 1 0.6014 3.5861 5.0285 40 1 0.1831 1.8564 5.2240 41 1 -2.3926 2.0502 5.9131 42 1 2.9383 2.2417 7.8085 43 1 2.6218 3.9939 7.6739 44 1 1.6486 5.4160 6.1995 45 1 2.6247 7.5270 4.9326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069917193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:45 Heat of formation + Delta-G solvation = 117.160451 kcal Electronic energy + Delta-G solvation = -31290.110429 eV Core-core repulsion = 27120.115243 eV Total energy + Delta-G solvation = -4169.995186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.08768 -42.58208 -39.41355 -37.77670 -34.36399 -33.95812 -33.52147 -32.62027 -31.74136 -30.69797 -29.11312 -28.62340 -27.61499 -25.10539 -24.08049 -23.02139 -22.52306 -22.35995 -21.21392 -20.30208 -20.07643 -19.64788 -18.03430 -17.53284 -17.05928 -16.29377 -16.16015 -15.59614 -15.40010 -14.97001 -14.68461 -14.52621 -14.30284 -14.23921 -14.02536 -13.70656 -13.39751 -13.08168 -12.86948 -12.73502 -12.61704 -12.42261 -12.26054 -11.92329 -11.54603 -11.48790 -11.37648 -11.03244 -10.99088 -10.81138 -10.72987 -10.53490 -10.23311 -10.00464 -9.86134 -9.80612 -9.69783 -9.10972 -8.85480 -8.74356 -8.52763 -7.14453 -5.84628 -3.31629 1.42025 1.86046 2.05426 2.53015 2.76814 2.79888 3.30460 3.34813 3.37295 3.41444 3.56834 4.29226 4.44603 4.54086 4.70495 4.83397 4.85620 4.90234 5.06093 5.08886 5.26254 5.30820 5.38097 5.39624 5.47962 5.48670 5.53856 5.63826 5.75703 5.84490 5.87110 5.96622 6.05533 6.10670 6.11246 6.17314 6.24233 6.30990 6.39074 6.60898 6.90325 6.99745 7.15684 7.38070 7.62770 7.74965 8.10526 8.48249 8.73649 8.96700 9.57472 10.15068 11.18196 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.004383 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.127328 B = 6387.149058 C = 8586.072714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C 0.079 3.921 4 O -0.177 6.177 5 C -0.043 4.043 6 C -0.184 4.184 7 C -0.238 4.238 8 C 0.592 3.408 9 O -0.533 6.533 10 N -0.709 5.709 11 C 0.112 3.888 12 H 0.118 0.882 13 C 0.145 3.855 14 N -0.598 5.598 15 C -0.238 4.238 16 H 0.082 0.918 17 C -0.001 4.001 18 N -0.914 5.914 19 Si 0.918 3.082 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.130 3.870 24 C 0.115 3.885 25 H 0.120 0.880 26 N -0.276 5.276 27 C -0.017 4.017 28 C -0.069 4.069 29 N -0.278 5.278 30 N -0.102 5.102 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.207 0.793 37 H 0.153 0.847 38 H 0.396 0.604 39 H 0.021 0.979 40 H 0.122 0.878 41 H 0.257 0.743 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.194 0.806 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 1.849 -10.129 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C 0.026 3.974 4 O -0.073 6.073 5 C -0.108 4.108 6 C -0.203 4.203 7 C -0.243 4.243 8 C 0.380 3.620 9 O -0.411 6.411 10 N -0.360 5.360 11 C 0.004 3.996 12 H 0.135 0.865 13 C 0.019 3.981 14 N -0.325 5.325 15 C -0.365 4.365 16 H 0.100 0.900 17 C -0.198 4.198 18 N -0.560 5.560 19 Si 0.748 3.252 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.209 1.209 23 C 0.003 3.997 24 C 0.012 3.988 25 H 0.138 0.862 26 N -0.069 5.069 27 C -0.169 4.169 28 C -0.226 4.226 29 N -0.144 5.144 30 N -0.081 5.081 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.224 0.776 37 H 0.171 0.829 38 H 0.231 0.769 39 H 0.039 0.961 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.211 0.789 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.397 0.541 -10.963 13.820 hybrid contribution -1.442 1.090 1.394 2.282 sum 6.955 1.631 -9.569 11.942 Atomic orbital electron populations 1.21697 0.93187 1.02684 1.02617 1.20389 0.97144 0.86259 1.04890 1.22853 0.97081 0.94488 0.83017 1.83748 1.65411 1.23112 1.35005 1.23793 1.04552 0.86185 0.96283 1.22890 1.05040 0.97781 0.94631 1.21179 1.13351 0.95767 0.93970 1.17106 0.76917 0.84424 0.83549 1.90773 1.46160 1.20366 1.83840 1.45560 1.67787 1.17129 1.05543 1.23066 0.98245 0.99517 0.78729 0.86452 1.22408 0.91577 1.01636 0.82444 1.44386 1.01505 1.84111 1.02518 1.18963 0.86512 1.43404 0.87648 0.90011 1.24831 0.97383 1.01112 0.96431 1.69740 1.18947 1.54088 1.13261 0.86109 0.80955 0.78038 0.80088 1.21036 1.21461 1.20915 1.21654 0.87216 1.00146 0.90733 1.23239 1.01977 0.76437 0.97098 0.86220 1.47455 1.16743 1.10592 1.32128 1.23897 1.00074 0.87358 1.05560 1.23542 0.96159 1.00790 1.02066 1.75037 1.16376 1.02509 1.20462 1.78265 1.12446 1.06602 1.10822 0.91358 0.91385 0.92833 0.90271 0.86761 0.77635 0.82904 0.76859 0.96143 0.86011 0.93223 0.92645 0.94080 0.78907 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.05 -0.62 5.93 -27.88 -0.17 -0.78 16 3 C 0.08 1.11 6.63 -34.96 -0.23 0.88 16 4 O -0.18 -2.26 10.52 7.66 0.08 -2.18 16 5 C -0.04 -0.47 12.03 29.30 0.35 -0.12 16 6 C -0.18 -2.45 10.60 -37.45 -0.40 -2.85 16 7 C -0.24 -3.75 6.31 -103.27 -0.65 -4.40 16 8 C 0.59 10.71 7.81 -12.54 -0.10 10.61 16 9 O -0.53 -10.80 14.49 5.26 0.08 -10.73 16 10 N -0.71 -12.30 5.16 -52.81 -0.27 -12.57 16 11 C 0.11 2.03 3.29 -65.78 -0.22 1.81 16 12 H 0.12 2.22 7.54 -51.93 -0.39 1.83 16 13 C 0.15 3.22 5.17 -2.53 -0.01 3.20 16 14 N -0.60 -13.27 3.39 -170.07 -0.58 -13.85 16 15 C -0.24 -5.93 10.27 -15.06 -0.15 -6.09 16 16 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 17 C 0.00 -0.01 5.49 -17.43 -0.10 -0.11 16 18 N -0.91 -25.06 10.09 55.49 0.56 -24.50 16 19 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.13 2.27 6.29 -3.06 -0.02 2.25 16 24 C 0.12 1.82 3.96 -66.09 -0.26 1.56 16 25 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 26 N -0.28 -4.37 2.38 -52.98 -0.13 -4.49 16 27 C -0.02 -0.27 9.36 -17.05 -0.16 -0.43 16 28 C -0.07 -0.98 12.05 -17.74 -0.21 -1.20 16 29 N -0.28 -4.51 12.41 30.24 0.38 -4.13 16 30 N -0.10 -1.69 12.29 60.35 0.74 -0.95 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.58 6.50 -51.93 -0.34 1.24 16 36 H 0.21 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.15 1.93 7.74 -52.48 -0.41 1.53 16 38 H 0.40 6.63 5.97 -40.82 -0.24 6.38 16 39 H 0.02 0.49 7.58 -51.93 -0.39 0.10 16 40 H 0.12 3.24 5.87 -51.93 -0.31 2.94 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.71 7.19 -51.93 -0.37 0.33 16 44 H 0.19 3.13 7.72 -52.49 -0.41 2.73 16 45 H 0.19 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -30.01 373.91 -6.27 -36.28 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -5.78 Total: 12.83 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.96 Total: 2.97 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.70 Total: -60.49 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.16 Total: -12.90 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.01 -6.27 -36.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069917193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.443 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds